D MUT_CYTO_ELU

710

76615

4.7

nucleolin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19787.19787.3	5.4253	0.5305	2569.202	2569.8535	1	1337.0	36.4%	7	K.QKVEGTEPTTAFNLFVGNLNFNK.S	3
*	step03.18830.18830.2	5.409	0.5747	2312.87	2313.5508	1	1131.9	55.0%	7	K.VEGTEPTTAFNLFVGNLNFNK.S	2
*	step03.18944.18945.3	6.3104	0.4076	2314.655	2313.5508	1	2689.0	48.8%	9	K.VEGTEPTTAFNLFVGNLNFNK.S	3
*	step02.19365.19365.2	3.0496	0.2118	2553.961	2553.4905	16	175.1	17.0%	1	K.VEGT#EPT#T#AFNLFVGNLNFNK.S	2
*	step02.11720.11720.2	2.9549	0.452	939.137	938.05963	1	679.7	87.5%	1	K.TGISDVFAK.N	2
*	step03.7802.7802.2	3.3382	0.4109	1000.89	1001.11896	1	1338.5	87.5%	6	K.NDLAVVDVR.I	2
*	step02.5735.5735.1	3.2699	0.4053	1001.653	1001.11896	1	295.6	75.0%	3	K.NDLAVVDVR.I	1
*	step03.14969.14969.2	5.323	0.3904	1777.582	1777.9086	1	3060.2	89.3%	6	R.KFGYVDFESAEDLEK.A	2
*	step02.474.474.2	5.6186	0.5581	1650.453	1649.7356	1	2185.5	88.5%	23	K.FGYVDFESAEDLEK.A	2
*	step02.6548.6548.1	1.8305	0.2155	806.464	806.9292	8	312.8	66.7%	1	K.VFGNEIK.L	1
*	step05.13067.13067.2	3.0133	0.1143	1403.256	1402.6635	1	889.5	72.7%	1	K.VFGNEIKLEKPK.G	2
*	step03.19314.19314.3	4.948	0.3489	2608.607	2608.8848	1	1858.4	40.5%	3	K.NLPYKVTQDELKEVFEDAAEIR.L	3
*	step03.17594.17594.3	5.0333	0.4074	1993.437	1993.1606	1	1869.5	46.9%	2	K.VTQDELKEVFEDAAEIR.L	3
*	step03.17592.17592.2	4.7895	0.4727	1993.633	1993.1606	1	2232.0	71.9%	7	K.VTQDELKEVFEDAAEIR.L	2
*	step02.1617.1617.2	3.1745	0.3645	1180.495	1179.2614	1	1387.3	88.9%	19	K.EVFEDAAEIR.L	2
*	step05.13816.13816.2	2.6957	0.4889	1155.913	1156.3557	1	1235.4	83.3%	6	K.SKGIAYIEFK.T	2
*	step02.13149.13149.1	1.9107	0.126	940.54	941.10516	6	798.8	71.4%	1	K.GIAYIEFK.T	1
*	step02.13138.13138.2	3.0118	0.226	941.999	941.10516	1	603.8	85.7%	3	K.GIAYIEFK.T	2
*	step02.11308.11308.2	2.5243	0.4167	1161.221	1161.286	1	717.0	83.3%	2	R.SISLYYTGEK.G	2
*	step06.20334.20334.2	5.934	0.467	2503.591	2502.7556	1	1914.8	61.9%	11	K.TLVLSNLSYSATEETLQEVFEK.A	2
*	step03.19737.19737.3	5.5011	0.4321	2504.142	2502.7556	1	1518.0	45.2%	8	K.TLVLSNLSYSATEETLQEVFEK.A	3
*	step05.10416.10416.2	4.0111	0.319	1446.074	1445.6484	1	998.5	79.2%	6	K.ATFIKVPQNQNGK.S	2
*	step05.17210.17210.3	4.5377	0.4046	1810.73	1810.9834	1	2800.9	55.0%	4	K.SKGYAFIEFASFEDAK.E	3
*	step04.17286.17286.2	5.6244	0.5069	1812.29	1810.9834	1	2776.2	80.0%	12	K.SKGYAFIEFASFEDAK.E	2
*	step04.17958.17958.3	3.7435	0.4474	2727.608	2727.9563	2	595.8	29.3%	1	K.SKGYAFIEFASFEDAKEALNSCNK.R	3
*	step04.17565.17565.2	4.1522	0.5438	1595.591	1595.7328	1	1966.8	80.8%	4	K.GYAFIEFASFEDAK.E	2
*	step06.19522.19522.3	4.3696	0.3332	2668.332	2668.892	1	482.5	30.7%	3	K.GYAFIEFASFEDAKEALNSCNKR.E	3
*	step05.12983.12983.2	3.0048	0.3931	1152.757	1153.3599	1	993.0	83.3%	2	R.AIRLELQGPR.G	2
*	step02.6788.6788.2	2.3642	0.1207	812.72	812.937	2	521.1	83.3%	2	R.LELQGPR.G	2
*	step04.5244.5244.2	4.0298	0.4827	2201.856	2201.2876	1	942.6	55.3%	10	K.GLSEDTTEETLKESFDGSVR.A	2
*	step05.5586.5586.3	4.6332	0.5026	2202.592	2201.2876	1	1494.4	43.4%	2	K.GLSEDTTEETLKESFDGSVR.A	3
*	step02.135.135.2	4.9795	0.4977	1563.048	1562.618	1	1536.8	80.8%	29	K.GFGFVDFNSEEDAK.A	2
*	step02.13440.13442.2	4.4766	0.3889	2346.638	2347.5872	1	843.7	60.0%	1	K.EAMEDGEIDGNKVTLDWAKPK.G	2
*	step02.13414.13414.3	4.5357	0.4999	2348.196	2347.5872	1	1342.3	42.5%	3	K.EAMEDGEIDGNKVTLDWAKPK.G	3
*	step02.12785.12785.2	2.8084	0.3706	2362.723	2363.5867	2	305.6	40.0%	2	K.EAM*EDGEIDGNKVTLDWAKPK.G	2
*	step02.12726.12726.3	3.719	0.2998	2364.088	2363.5867	1	1262.0	38.8%	1	K.EAM*EDGEIDGNKVTLDWAKPK.G	3
*	step03.12744.12744.2	2.7026	0.4206	1057.643	1058.2552	1	1393.9	87.5%	2	K.VTLDWAKPK.G	2

gi|4504897|ref|NP_002

529

57862

5.4

importin subunit alpha-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7708.7708.2	5.0706	0.3995	1878.23	1877.9465	1	995.6	68.8%	4	R.NVSSFPDDATSPLQENR.N	2
*	step02.13493.13493.2	3.7418	0.4807	1689.593	1689.8077	1	2058.5	82.1%	2	R.NNQGTVNWSVDDIVK.G	2
*	step02.8987.8987.2	3.2551	0.3993	1901.501	1902.0161	1	1293.9	61.8%	2	K.GINSSNVENQLQATQAAR.K	2
*	step05.1413.1413.3	5.0714	0.3609	2666.483	2667.1106	1	1443.2	33.3%	2	K.YGAVDPLLALLAVPDMSSLACGYLR.N	3
*	step04.1144.1144.2	3.3214	0.3196	2667.289	2667.1106	1	332.3	33.3%	2	K.YGAVDPLLALLAVPDMSSLACGYLR.N	2
*2	step03.15501.15501.2	2.6338	0.2613	1377.734	1378.5524	1	572.3	70.0%	1	R.NLTWTLSNLCR.N	2
*	step05.19372.19372.2	4.6239	0.4375	2186.595	2186.5398	1	1124.4	63.2%	4	R.NKNPAPPIDAVEQILPTLVR.L	2
*	step05.19498.19498.3	4.6448	0.2437	2186.865	2186.5398	1	1667.4	47.4%	3	R.NKNPAPPIDAVEQILPTLVR.L	3
*	step05.19260.19260.3	6.6012	0.6333	3140.225	3139.371	1	1294.9	34.6%	5	R.LLHHDDPEVLADTCWAISYLTDGPNER.I	3
*	step03.16547.16547.2	3.792	0.3495	1550.617	1550.8677	1	681.3	64.3%	3	K.LLGASELPIVTPALR.A	2
*	step03.17016.17016.3	4.5785	0.3405	3120.534	3121.459	1	866.4	26.9%	1	K.LSIMIEECGGLDKIEALQNHENESVYK.A	3

gi|5174613|ref|NP_005

375

42823

4.7

nucleosome assembly protein 1-like 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13256.13256.3	3.5624	0.2662	1911.971	1912.1323	4	822.2	40.6%	1	R.LDNVPHTPSSYIETLPK.A	3
*	step02.13264.13264.2	3.1955	0.1602	1912.773	1912.1323	51	333.4	40.6%	1	R.LDNVPHTPSSYIETLPK.A	2
	step02.5594.5594.2	3.129	0.3097	1337.341	1337.419	1	1113.8	77.8%	3	K.FYEEVHDLER.K	2 2
*	step05.15346.15346.2	3.7738	0.4445	1456.481	1457.6976	1	1195.1	81.8%	3	R.KYAALYQPLFDK.R	2
*	step02.14693.14693.2	3.2072	0.2354	1329.737	1329.5248	1	1253.7	85.0%	1	K.YAALYQPLFDK.R	2
*	step06.21671.21671.2	3.3909	0.5304	1414.375	1413.6466	1	430.0	75.0%	2	K.GIPEFWFTIFR.N	2
*	step02.20118.20120.2	3.5001	0.3298	2135.681	2136.4084	1	867.8	52.9%	1	R.NVDMLSELVQEYDEPILK.H	2
*	step06.20095.20095.3	3.8844	0.3344	3411.873	3411.74	1	509.4	29.5%	1	K.FSDPGQPM*SFVLEFHFEPNDYFTNSVLTK.T	3
*	step03.19808.19808.3	4.0708	0.398	2979.453	2980.058	1	718.1	26.9%	1	K.ASGDGESLDEDSEFTLASDFEIGHFFR.E	3

Similarities: gi|21327708|ref|NP_63(1:8)

gi|4506625|ref|NP_000

148

16561

11.0

60S ribosomal protein L27a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14029.14029.2	4.2051	0.4393	1585.744	1586.7739	1	1394.7	83.3%	5	R.INFDKYHPGYFGK.V	2
*	step04.11680.11680.2	3.6777	0.3526	1579.631	1579.7332	1	837.8	66.7%	2	K.RNQSFCPTVNLDK.L	2
*	step04.20361.20361.3	5.8706	0.5256	2637.395	2637.9229	1	2136.9	41.7%	8	R.NQSFCPTVNLDKLWTLVSEQTR.V	3
*	step06.20626.20626.2	3.6413	0.3583	2637.847	2637.9229	1	715.2	45.2%	5	R.NQSFCPTVNLDKLWTLVSEQTR.V	2
*	step02.13436.13436.2	3.1132	0.3062	1233.469	1233.3986	1	509.0	83.3%	2	K.LWTLVSEQTR.V	2
*	step04.13449.13449.2	3.7788	0.4082	1355.466	1354.5804	1	1209.6	79.2%	4	K.NKTGAAPIIDVVR.S	2
*	step02.12237.12237.1	2.0658	0.3053	1111.717	1112.3044	1	322.0	60.0%	2	K.TGAAPIIDVVR.S	1
*	step02.12206.12206.2	3.6767	0.4985	1112.411	1112.3044	1	892.9	95.0%	2	K.TGAAPIIDVVR.S	2

gi|10863927|ref|NP_06

32.7%

165

18012

7.8

peptidyl-prolyl cis-trans isomerase A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15882.15882.2	3.258	0.41	1380.451	1380.6132	1	824.3	72.7%	4	R.VSFELFADKVPK.T	2
*	step02.15324.15324.2	4.6361	0.4527	1833.518	1833.0305	1	1838.4	75.0%	2	K.SIYGEKFEDENFILK.H	2
*	step06.18112.18112.3	6.0008	0.418	2792.846	2793.1016	1	1424.4	34.6%	3	K.HTGPGILSMANAGPNTNGSQFFICTAK.T	3
*	step06.17259.17259.3	4.8906	0.3601	2809.382	2809.1008	1	632.5	31.7%	1	K.HTGPGILSM*ANAGPNTNGSQFFICTAK.T	3

gi|4503513|ref|NP_003

32.6%

325

36502

5.6

eukaryotic translation initiation factor 3 subunit I [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16077.16077.2	2.2249	0.2769	1322.451	1322.6051	1	496.4	70.0%	1	-.MKPILLQGHER.S	2
*	step06.15439.15439.2	2.6221	0.3075	1339.643	1338.6045	1	686.0	75.0%	2	-.M*KPILLQGHER.S	2
*	step02.21099.21099.2	2.4475	0.2564	2722.761	2723.0327	1	261.4	28.3%	1	R.EGDLLFTVAKDPIVNVWYSVNGER.L	2
*	step03.20271.20271.3	5.5879	0.4658	2724.308	2723.0327	1	1521.3	39.1%	2	R.EGDLLFTVAKDPIVNVWYSVNGER.L	3
*	step02.17729.17729.2	3.1149	0.4039	1911.933	1911.1182	1	581.1	56.2%	2	R.TCGFDFGGNIIMFSTDK.Q	2
*	step02.9803.9803.2	3.1586	0.3951	1319.464	1319.4451	1	1219.7	80.0%	2	K.LFDSTTLEHQK.T	2
*	step05.17807.17807.3	3.6519	0.4025	1529.747	1529.6793	1	1860.2	61.4%	2	R.FFHLAFEEEFGR.V	3
*	step06.19337.19337.2	3.8512	0.4275	1530.385	1529.6793	1	896.8	77.3%	8	R.FFHLAFEEEFGR.V	2
*	step06.16929.16929.2	4.1387	0.5811	1681.494	1680.8474	1	1102.2	66.7%	2	K.GHFGPINSVAFHPDGK.S	2
*	step04.18887.18887.2	3.3494	0.4794	1982.944	1983.1229	1	1083.2	67.9%	4	R.IHYFDPQYFEFEFEA.-	2

gi|17158044|ref|NP_00

32.1%

249

28681

10.8

40S ribosomal protein S6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17291.17291.2	4.5133	0.2687	1596.184	1595.8822	1	1518.7	76.9%	1	-.MKLNISFPATGCQK.L	2
*	step06.16177.16177.2	4.4804	0.3347	1612.593	1611.8816	1	1221.9	73.1%	7	-.M*KLNISFPATGCQK.L	2
*	step02.12184.12184.2	2.6938	0.1634	1335.915	1336.5122	2	798.3	72.7%	1	K.LNISFPATGCQK.L	2
*	step02.17140.17140.3	4.0994	0.296	2353.739	2352.655	1	2278.1	43.8%	1	K.RMATEVAADALGEEWKGYVVR.I	3
*	step01.12836.12836.2	3.1908	0.286	1622.632	1621.7936	1	483.9	67.9%	4	R.MATEVAADALGEEWK.G	2
*	step01.11254.11254.2	2.2309	0.1115	1638.213	1637.793	1	796.8	64.3%	1	R.M*ATEVAADALGEEWK.G	2
*	step02.16817.16817.2	4.5872	0.5997	2196.105	2196.4688	1	2067.5	68.4%	3	R.MATEVAADALGEEWKGYVVR.I	2
*	step02.16820.16820.3	4.302	0.5199	2196.571	2196.4688	1	1322.7	42.1%	1	R.MATEVAADALGEEWKGYVVR.I	3
*	step02.15936.15936.2	3.0261	0.3936	2211.711	2212.4683	1	175.6	36.8%	1	R.M*ATEVAADALGEEWKGYVVR.I	2
*	step05.19338.19338.2	3.8319	0.4461	1829.262	1828.1798	1	455.9	50.0%	3	R.GCIVDANLSVLNLVIVK.K	2
*	step02.10488.10488.2	3.0614	0.2864	1728.955	1727.9406	4	543.2	50.0%	1	K.KGEKDIPGLTDTTVPR.R	2
*	step02.8696.8696.2	2.5889	0.4558	1285.111	1285.4287	1	519.1	81.8%	2	K.DIPGLTDTTVPR.R	2
*	step03.13824.13824.2	3.1968	0.3339	1463.82	1464.6486	1	1044.4	86.4%	1	R.KLFNLSKEDDVR.Q	2

U	gi\|148746199\|ref\|NP_0	5	21	32.0%	128	14632	10.8	60S ribosomal protein L31 isoform 2 [Homo sapiens]
U	gi\|4506633\|ref\|NP_000	5	21	32.8%	125	14463	10.5	60S ribosomal protein L31 isoform 1 [Homo sapiens]
U	gi\|153252132\|ref\|NP_0	5	21	33.9%	121	13995	10.8	60S ribosomal protein L31 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7074.7074.1	1.8526	0.3218	988.677	989.1082	1	239.0	62.5%	2	R.SAINEVVTR.E	1
step02.7035.7035.2	3.0039	0.3311	989.178	989.1082	1	1331.4	93.8%	2	R.SAINEVVTR.E	2
step05.10346.10346.1	2.177	0.3059	757.588	757.903	1	559.7	83.3%	2	R.IHGVGFK.K	1
step06.19285.19285.3	7.0819	0.5762	2958.762	2959.299	1	1994.6	38.5%	8	R.KRNEDEDSPNKLYTLVTYVPVTTFK.I	3 2
step04.17194.17194.2	4.6073	0.5317	1646.59	1645.9626	1	1724.7	76.9%	7	K.LYTLVTYVPVTTFK.I	2

gi|4503519|ref|NP_003

31.7%

357

37564

5.4

eukaryotic translation initiation factor 3 subunit F [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18130.18130.3	3.9753	0.3199	1712.626	1712.9707	1	1502.6	53.6%	4	R.LHPVILASIVDSYER.R	3
*	step03.18068.18068.2	5.3442	0.5712	1713.463	1712.9707	1	1485.5	85.7%	5	R.LHPVILASIVDSYER.R	2
*	step02.13370.13370.2	3.6732	0.5521	1116.407	1116.333	1	972.2	90.0%	2	R.VIGTLLGTVDK.H	2
*	step03.15796.15796.3	4.9463	0.4453	3207.603	3208.409	1	1317.1	31.5%	2	K.HSVEVTNCFSVPHNESEDEVAVDMEFAK.N	3
*	step03.15981.15981.2	3.8671	0.4757	1326.58	1325.666	1	874.6	72.7%	1	R.TMGVMFTPLTVK.Y	2
*	step03.14523.14523.2	2.5179	0.2735	1342.584	1341.6654	1	550.4	68.2%	1	R.TMGVM*FTPLTVK.Y	2
*	step03.13251.13251.2	2.9246	0.4752	1357.272	1357.6648	1	1409.0	81.8%	2	R.TMGVMFTPLTVK.Y	2
*	step02.12226.12226.2	4.3568	0.4327	1659.457	1658.8384	1	1800.5	71.9%	3	R.VIGLSSDLQQVGGASAR.I	2
*	step06.21759.21759.3	5.621	0.5535	2051.21	2051.2832	1	2098.8	51.4%	2	R.IQDALSTVLQYAEDVLSGK.V	3
*	step06.22005.22005.2	6.1874	0.5983	2051.571	2051.2832	1	2474.1	77.8%	9	R.IQDALSTVLQYAEDVLSGK.V	2
*	step04.15759.15759.2	3.8154	0.276	1276.488	1276.5731	1	1501.6	90.0%	5	R.FLMSLVNQVPK.I	2
*	step03.13736.13736.2	3.7929	0.3752	1292.224	1292.5725	1	1475.3	90.0%	4	R.FLM*SLVNQVPK.I	2

gi|4759160|ref|NP_004

31.7%

126

13916

10.3

small nuclear ribonucleoprotein Sm D3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11267.11267.3	6.353	0.5434	2415.6	2415.595	1	3366.5	51.2%	2	K.VLHEAEGHIVTCETNTGEVYR.G	3
*	step02.11568.11568.2	3.0393	0.4383	1219.345	1219.415	1	1516.9	88.9%	2	R.VAQLEQVYIR.G	2
*	step02.18537.18537.2	2.4329	0.1483	1090.096	1090.4038	3	758.9	81.2%	1	R.FLILPDMLK.N	2

U	gi\|16117794\|ref\|NP_05	8	12	31.4%	105	12254	11.6	60S ribosomal protein L36 [Homo sapiens]
U	gi\|16117796\|ref\|NP_37	8	12	31.4%	105	12254	11.6	60S ribosomal protein L36 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.9681.9681.1	1.9078	0.392	992.6	993.2051	1	354.2	62.5%	2	R.YPMAVGLNK.G	1
step02.9663.9663.2	2.6508	0.2432	993.433	993.2051	2	1435.4	93.8%	2	R.YPMAVGLNK.G	2
step02.7904.7904.2	2.7693	0.2858	1228.481	1228.3291	1	774.5	83.3%	1	R.EVCGFAPYER.R	2
step05.15724.15724.3	4.2587	0.3687	1517.674	1517.7797	1	753.3	45.8%	2	R.KREELSNVLAAMR.K	3
step05.15866.15866.2	4.0586	0.3076	1518.953	1517.7797	1	998.0	79.2%	1	R.KREELSNVLAAMR.K	2
step06.15563.15563.3	3.8536	0.3004	1662.228	1661.9519	1	670.3	48.1%	1	R.KREELSNVLAAM*RK.A	3
step02.15526.15526.2	2.3087	0.36	1390.372	1389.6067	1	289.9	59.1%	1	K.REELSNVLAAMR.K	2
step02.10821.10821.2	2.7613	0.2399	1377.247	1377.5927	1	559.3	77.3%	2	R.EELSNVLAAM*RK.A	2

gi|83715985|ref|NP_00

31.3%

252

25984

7.2

3-hydroxyacyl-CoA dehydrogenase type-2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16793.16793.3	7.2374	0.5185	2861.574	2862.2217	1	4950.2	47.1%	2	K.KLGNNCVFAPADVTSEKDVQTALALAK.G	3 3
step04.12690.12690.2	2.7384	0.2598	1202.372	1201.4646	1	993.6	77.3%	1	K.GGIVGM*TLPIAR.D	2 2
step04.14959.14959.2	2.8491	0.4033	1621.697	1622.8428	1	1628.4	84.6%	2	K.VCNFLASQVPFPSR.L	2 2
step03.1757.1757.3	5.3985	0.3592	2879.956	2880.2468	1	1344.0	34.0%	3	R.LGDPAEYAHLVQAIIENPFLNGEVIR.L	3 3

Similarities: gi|4758504|ref|NP_004(4:0)

gi|4758302|ref|NP_004

30.8%

104

12259

5.9

enhancer of rudimentary homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.10342.10342.2	2.5973	0.3704	2056.366	2056.1807	1	449.0	43.8%	1	R.TYADYESVNECMEGVCK.M	2
*	step02.11714.11714.2	3.4556	0.2965	1872.187	1872.0267	1	411.8	50.0%	3	R.ADTQTYQPYNKDWIK.E	2

gi|13699824|ref|NP_00

30.4%

1056

119159

5.6

kinesin-like protein KIF11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.18590.18590.2	5.2289	0.4714	2216.549	2217.3767	1	2014.5	66.7%	2	R.SPNEEYTWEEDPLAGIIPR.T	2
*	step03.12314.12314.2	2.3969	0.2424	1015.528	1016.17523	1	610.8	92.9%	2	R.TLHQIFEK.L	2
*	step03.1824.1824.2	2.6839	0.4046	2782.676	2783.0369	1	468.7	32.6%	1	K.VSLLEIYNEELFDLLNPSSDVSER.L	2
*	step03.1816.1816.3	5.4205	0.4292	2783.97	2783.0369	1	1822.8	40.2%	1	K.VSLLEIYNEELFDLLNPSSDVSER.L	3
*	step02.16270.16270.2	4.4462	0.4082	2257.897	2258.5134	1	1368.0	58.3%	2	K.GLEEITVHNKDEVYQILEK.G	2
*	step02.16226.16226.3	5.4965	0.4815	2258.513	2258.5134	1	1741.5	43.1%	1	K.GLEEITVHNKDEVYQILEK.G	3
*	step04.14417.14417.2	4.659	0.4798	1713.503	1713.9204	1	975.5	76.7%	2	R.AREAGNINQSLLTLGR.V	2
*	step02.7241.7241.2	2.9106	0.3671	959.066	959.0821	1	953.4	93.8%	2	R.ILQDSLGGR.T	2
*	step06.20629.20629.2	2.6635	0.3521	2832.231	2832.1558	1	216.7	36.0%	1	R.TSIIATISPASLNLEETLSTLEYAHR.A	2
*	step03.10056.10058.2	3.7874	0.3185	1297.191	1297.4858	2	1121.6	80.0%	1	K.NILNKPEVNQK.L	2
*	step03.17600.17600.3	4.0995	0.1926	1671.811	1671.9137	1	2064.8	55.8%	2	K.LTVQEEQIVELIEK.I	3
*	step02.17963.17963.2	5.4503	0.4337	1672.577	1671.9137	1	2226.8	80.8%	6	K.LTVQEEQIVELIEK.I	2
*	step01.7134.7134.2	3.7138	0.401	1629.078	1629.701	1	2336.9	84.6%	1	K.EEYITSALESTEEK.L	2
*	step02.13059.13059.2	3.2006	0.4118	1971.56	1972.1862	1	849.7	52.9%	1	K.LLNTVEETTKDVSGLHSK.L	2
*	step02.20709.20709.2	4.1998	0.411	1680.168	1679.9194	1	1366.2	76.9%	2	K.NLNSLFNNMEELIK.D	2
*	step03.435.435.2	3.6264	0.3943	1270.546	1270.5433	1	1658.1	85.0%	2	K.TVLQELINVLK.T	2
*	step06.22944.22944.2	3.8746	0.427	2161.763	2160.6008	1	685.6	47.4%	1	K.TDLLSSLEMILSPTVVSILK.I	2
*	step06.22241.22241.2	3.4847	0.2951	2177.37	2176.6003	1	680.2	39.5%	2	K.TDLLSSLEM*ILSPTVVSILK.I	2
*	step06.21697.21697.3	5.1853	0.3925	3405.189	3405.742	1	886.3	27.7%	5	K.ELDGFLSILCNNLHELQENTICSLVESQK.Q	3
*	step02.5753.5753.2	4.777	0.5786	1533.319	1532.5869	1	2084.6	87.5%	4	K.FCADSDGFSQELR.N	2
*	step04.16168.16168.2	3.4562	0.3319	1845.869	1845.9894	1	899.1	57.1%	1	R.TVYFSEQWVSSLNER.E	2
*	step05.16805.16805.3	5.3073	0.2709	2587.77	2588.9348	1	2639.9	42.9%	2	K.LNCFLEQDLKLDIPTGTTPQRK.S	3
*	step02.7778.7778.2	3.3304	0.2959	1199.68	1199.339	6	516.5	75.0%	1	K.LDIPTGTTPQR.K	2
*	step05.13498.13498.2	2.9995	0.2385	1327.365	1327.5535	1	634.5	65.0%	2	R.KSYLYPSTLVR.T	2
*	step03.13126.13127.2	3.0974	0.3044	1152.632	1152.3287	1	455.8	87.5%	3	R.EHLLDQLKR.K	2

gi|34098946|ref|NP_00

30.2%

324

35924

9.9

nuclease-sensitive element-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.6190.6190.2	2.251	0.3592	941.774	941.0253	1	1079.0	92.9%	1	R.NGYGFINR.N	2 2 2 2
	step03.12030.12030.2	3.8653	0.3473	1873.488	1874.0874	1	975.4	66.7%	2	R.NDTKEDVFVHQTAIKK.N	2 2 2
	step02.8592.8592.2	3.084	0.4298	1288.206	1287.4463	1	478.1	85.0%	2	K.EDVFVHQTAIK.K	2 2 2 2
	step01.7107.7107.2	4.9136	0.5241	1796.872	1796.8671	1	1526.7	71.9%	8	R.SVGDGETVEFDVVEGEK.G	2 2 2 2
*	step02.6854.6855.2	4.6872	0.4497	1696.459	1696.8434	1	1909.0	72.2%	3	K.GAEAANVTGPGGVPVQGSK.Y	2
*	step06.16927.16927.2	2.6443	0.0978	1131.491	1130.3467	3	658.7	78.6%	2	R.RFPPYYMR.R	2
*	step03.11198.11198.3	6.0164	0.4948	3225.248	3225.459	1	660.9	29.3%	3	R.RPQYSNPPVQGEVMEGADNQGAGEQGRPVR.Q	3

Similarities: gi|224586884|ref|NP_0(4:3)
gi|224586882|ref|NP_0(4:3)
gi|156415990|ref|NP_0(3:4)

U	gi\|212549555\|ref\|NP_0	19	33	30.0%	706	76502	7.9	interleukin enhancer-binding factor 3 isoform e [Homo sapiens]
U	gi\|24234756\|ref\|NP_70	19	33	30.7%	690	74607	8.2	interleukin enhancer-binding factor 3 isoform c [Homo sapiens]
U	gi\|24234753\|ref\|NP_00	19	33	30.2%	702	76033	7.8	interleukin enhancer-binding factor 3 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17402.17402.3	3.7699	0.2576	2672.618	2672.8691	1	510.9	30.7%	1	K.HSSVYPTQEELEAVQNMVSHTER.A	3 3
step03.17789.17789.2	3.0287	0.1767	1388.385	1388.6254	1	1301.7	72.7%	2	K.GDLDLELVLLCK.E	2 2
step05.602.602.3	5.0522	0.3053	3331.519	3330.771	1	954.9	29.2%	3	K.VADNLAIQLAAVTEDKYEILQSVDDAAIVIK.N	3 3
step06.18472.18472.2	3.6703	0.4463	1759.576	1760.0706	1	283.8	63.3%	2	K.EPPLSLTIHLTSPVVR.E	2 2
step04.13395.13395.2	2.3818	0.2695	926.354	926.0969	5	563.3	85.7%	1	R.VPTWGPLR.G	2 2
step04.11145.11145.2	3.3532	0.109	1601.579	1601.8135	1	573.5	56.7%	3	K.SIGTANRPMGAGEALR.R	2 2
step06.14929.14929.3	3.6701	0.2779	1756.731	1757.9999	1	795.7	45.3%	1	K.SIGTANRPMGAGEALRR.V	3 3
step06.14889.14889.2	2.2125	0.1591	1757.412	1757.9999	14	144.1	46.9%	1	K.SIGTANRPMGAGEALRR.V	2 2
step02.8258.8258.2	3.3105	0.3724	1369.349	1369.4657	1	920.8	81.8%	2	R.EDITQSAQHALR.L	2 2
step05.11852.11852.1	1.8835	0.174	984.556	985.16437	1	322.5	68.8%	1	R.LAAFGQLHK.V	1 1
step05.11792.11792.2	2.273	0.2115	984.992	985.16437	2	1025.6	87.5%	1	R.LAAFGQLHK.V	2 2
step05.10427.10427.2	3.2695	0.3192	1302.976	1302.5471	1	716.1	75.0%	2	R.LNQLKPGLQYK.L	2 2
step03.16766.16766.3	4.6259	0.3605	3189.679	3190.5295	1	1359.8	26.7%	2	K.LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK.K	3 3
step04.16807.16807.3	5.4277	0.4526	3318.769	3318.7024	1	714.3	29.0%	2	K.LVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK.T	3 3
step02.10536.10536.2	2.4857	0.3156	1443.98	1444.6392	1	821.2	65.4%	1	K.VLQDMGLPTGAEGR.D	2 2
step02.5909.5909.2	3.7483	0.4612	1460.279	1460.6385	1	1002.6	76.9%	2	K.VLQDM*GLPTGAEGR.D	2 2
step05.13435.13435.2	4.1584	0.4804	1890.606	1891.0748	1	1616.7	71.9%	2	R.GLKYELISETGGSHDKR.F	2 2 2
step04.14049.14049.3	3.9765	0.3622	1891.287	1891.0748	1	893.4	43.8%	2	R.GLKYELISETGGSHDKR.F	3 3 3
step02.12573.12573.2	3.0702	0.3196	1021.116	1021.1918	1	1542.7	94.4%	2	K.AYAALAALEK.L	2 2

Similarities: gi|212549553|ref|NP_0(19:0)
gi|21361745|ref|NP_06(2:17)

gi|52487191|ref|NP_05

30.0%

406

46971

5.3

endoplasmic reticulum resident protein 44 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.9763.9763.2	2.2548	0.1166	950.261	950.15674	12	467.7	78.6%	1	R.ISKYPTLK.L	2
*	step02.2064.2064.2	3.2011	0.3059	1147.682	1147.2609	1	1724.6	94.4%	13	R.DLAEITTLDR.S	2
*	step02.18353.18353.2	5.2063	0.618	2561.967	2562.8127	1	2926.0	65.9%	1	R.VANILHDDCAFLSAFGDVSKPER.Y	2
*	step02.18326.18326.3	7.4915	0.5571	2563.684	2562.8127	1	2197.8	48.9%	7	R.VANILHDDCAFLSAFGDVSKPER.Y	3
*	step03.1748.1748.3	4.5963	0.5399	2838.582	2838.2239	1	928.0	39.1%	3	R.EITFENGEELTEEGLPFLILFHMK.E	3
*	step06.22164.22164.2	3.2386	0.3214	2839.188	2838.2239	1	210.7	37.0%	3	R.EITFENGEELTEEGLPFLILFHMK.E	2
*	step03.416.416.3	3.6913	0.3467	2853.653	2854.2231	1	841.2	32.6%	1	R.EITFENGEELTEEGLPFLILFHM*K.E	3
*	step01.11697.11697.2	4.2967	0.3433	1781.578	1780.8708	1	1635.1	71.4%	5	K.EDTESLEIFQNEVAR.Q	2
*	step04.15027.15027.2	4.2957	0.3192	1694.668	1694.8658	1	1049.9	73.1%	9	K.GTINFLHADCDKFR.H	2
*	step04.15045.15045.3	3.6429	0.4015	1695.204	1694.8658	1	544.1	44.2%	3	K.GTINFLHADCDKFR.H	3
*	step06.19345.19345.3	3.9655	0.5829	1867.415	1867.203	1	1441.9	46.7%	3	R.HMYVFGDFKDVLIPGK.L	3
*	step06.19317.19317.2	5.294	0.5767	1867.807	1867.203	1	1097.5	80.0%	3	R.HMYVFGDFKDVLIPGK.L	2
*	step05.17134.17134.2	4.0714	0.4899	1881.953	1883.2025	1	761.6	66.7%	4	R.HM*YVFGDFKDVLIPGK.L	2
*	step05.17132.17132.3	3.9411	0.286	1883.25	1883.2025	1	1103.0	45.0%	3	R.HM*YVFGDFKDVLIPGK.L	3
*	step02.6873.6873.1	2.0909	0.2193	741.515	741.8987	1	284.4	75.0%	1	K.DVLIPGK.L	1
*	step06.17593.17593.2	3.4855	0.1109	1418.963	1419.6526	1	1552.3	81.8%	1	K.LKQFVFDLHSGK.L	2

gi|4503529|ref|NP_001

30.0%

406

46154

5.5

eukaryotic initiation factor 4A-I [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13851.13851.3	3.7806	0.4601	1828.66	1829.0483	1	1273.0	46.7%	1	R.GIYAYGFEKPSAIQQR.A	3 3 3
	step04.13774.13774.2	4.4353	0.4194	1829.503	1829.0483	1	1328.6	76.7%	4	R.GIYAYGFEKPSAIQQR.A	2 2 2
	step02.8092.8092.2	3.6273	0.5063	1395.217	1395.5	1	944.8	73.1%	1	K.GYDVIAQAQSGTGK.T	2 2
*	step06.22248.22248.2	3.3445	0.1843	1904.69	1905.2244	1	1183.5	53.1%	2	K.TATFAISILQQIELDLK.A	2
*	step05.13918.13918.2	3.7434	0.3505	1619.568	1619.9136	1	1238.4	71.4%	2	K.LQMEAPHIIVGTPGR.V	2
*	step05.11623.11623.3	3.7433	0.4285	1634.862	1635.913	1	1158.2	51.8%	1	K.LQM*EAPHIIVGTPGR.V	3
*	step06.15115.15115.2	3.2607	0.4362	1635.408	1635.913	1	1205.6	71.4%	4	K.LQM*EAPHIIVGTPGR.V	2
	step01.16203.16203.2	2.7141	0.1729	1557.303	1556.7865	1	543.0	70.8%	2	K.MFVLDEADEMLSR.G	2 2
*	step02.16388.16388.2	3.9702	0.3908	1502.497	1502.6953	1	1686.6	77.3%	1	R.GFKDQIYDIFQK.L	2
*	step02.8457.8457.2	3.6776	0.4808	1582.414	1582.741	1	1188.7	76.9%	2	R.DFTVSAMHGDMDQK.E	2
*	step01.10193.10193.3	3.6018	0.3301	2429.156	2428.697	1	1202.6	41.2%	1	R.DIETFYNTSIEEMPLNVADLI.-	3
*	step01.10208.10208.2	3.2734	0.4999	2429.268	2428.697	1	994.9	52.5%	1	R.DIETFYNTSIEEMPLNVADLI.-	2

Similarities: gi|83700235|ref|NP_00(4:8)
gi|7661920|ref|NP_055(2:10)

U	gi\|14916501\|ref\|NP_14	7	43	30.0%	130	15069	10.9	40S ribosomal protein S24 isoform a [Homo sapiens]
U	gi\|4506703\|ref\|NP_001	7	43	29.3%	133	15423	10.8	40S ribosomal protein S24 isoform c [Homo sapiens]
U	gi\|214829241\|ref\|NP_0	7	43	29.8%	131	15197	10.9	40S ribosomal protein S24 isoform b [Homo sapiens]
U	gi\|214010226\|ref\|NP_0	7	43	13.5%	289	32431	10.2	40S ribosomal protein S24 isoform d [Homo sapiens]
U	gi\|214010224\|ref\|NP_0	7	43	29.8%	131	15197	10.9	40S ribosomal protein S24 isoform f [Homo sapiens]
U	gi\|214010222\|ref\|NP_0	7	43	29.5%	132	15325	10.9	40S ribosomal protein S24 isoform e [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.16842.16842.2	2.9993	0.5342	1365.171	1365.6699	1	1389.8	86.4%	2	R.KQMVIDVLHPGK.A	2
step06.16875.16875.3	4.3419	0.3413	1365.868	1365.6699	1	2546.0	63.6%	1	R.KQMVIDVLHPGK.A	3
step06.15672.15672.1	1.8721	0.2224	1381.922	1381.6693	1	166.8	59.1%	1	R.KQM*VIDVLHPGK.A	1
step05.19120.19120.2	3.7194	0.4047	1400.004	1399.6182	1	892.1	86.4%	35	K.TTPDVIFVFGFR.T	2
step04.19223.19223.3	3.5465	0.2032	1400.101	1399.6182	5	1101.3	45.5%	1	K.TTPDVIFVFGFR.T	3
step03.16769.16769.2	3.0437	0.4999	1682.535	1682.8754	1	1251.4	71.4%	2	K.TTGFGMIYDSLDYAK.K	2
step02.2225.2225.2	2.2367	0.2346	1699.803	1698.8748	2	210.7	42.9%	1	K.TTGFGM*IYDSLDYAK.K	2

gi|23397429|ref|NP_00

29.9%

374

42503

5.6

eukaryotic translation initiation factor 3 subunit M [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18474.18474.2	4.4132	0.4201	1517.578	1516.7902	1	1801.2	83.3%	7	R.LQLLSNLFHGMDK.N	2
*	step05.17140.17140.2	3.7185	0.3114	1533.511	1532.7896	1	1684.8	83.3%	6	R.LQLLSNLFHGM*DK.N	2
*	step02.14106.14106.2	2.2962	0.1015	2220.024	2220.505	56	79.0	28.9%	1	K.VAASCGAIQYIPTELDQVRK.W	2
*	step06.24113.24113.2	5.8685	0.6393	2046.697	2046.3945	1	1381.9	64.7%	2	K.FLEGELIHDLLTIFVSAK.L	2
*	step02.17391.17391.3	5.5603	0.5074	2626.507	2626.9285	1	1997.2	45.2%	4	K.FYQNNKDFIDSLGLLHEQNMAK.M	3
*	step04.16936.16936.3	3.541	0.3409	2642.344	2642.928	3	477.2	29.8%	1	K.FYQNNKDFIDSLGLLHEQNM*AK.M	3
*	step02.11204.11204.2	2.3307	0.1104	1387.989	1386.663	70	450.7	59.1%	1	R.LLTFMGMAVENK.E	2
*	step06.23807.23807.3	5.5402	0.4748	3042.454	3041.3357	1	1291.5	34.6%	2	K.EISFDTMQQELQIGADDVEAFVIDAVR.T	3
*	step04.1616.1616.3	4.5237	0.2934	3056.859	3057.3352	1	1099.4	32.7%	1	K.EISFDTM*QQELQIGADDVEAFVIDAVR.T	3

U	gi\|15431295\|ref\|NP_15	9	32	29.9%	211	24261	11.7	60S ribosomal protein L13 [Homo sapiens]
U	gi\|15431297\|ref\|NP_00	9	32	29.9%	211	24261	11.7	60S ribosomal protein L13 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.13639.13639.2	3.1349	0.2935	1347.408	1346.5219	1	1036.7	85.0%	5	R.RVATWFNQPAR.K	2
step05.13033.13033.2	2.7344	0.352	1319.28	1318.5084	1	565.6	65.0%	2	R.VATWFNQPARK.I	2
step06.14859.14859.2	2.3027	0.1108	1163.585	1163.3978	168	292.1	55.0%	1	R.PASGPIRPIVR.C	2
step02.9124.9124.2	2.3221	0.2045	958.038	958.0941	1	1223.4	81.2%	1	R.TIGISVDPR.R	2
step06.17568.17568.2	2.8214	0.2089	974.284	974.2247	2	972.3	92.9%	2	R.SKLILFPR.K	2
step04.16209.16209.3	6.0294	0.2907	2428.262	2428.7913	1	1961.6	43.2%	7	K.KGDSSAEELKLATQLTGPVMPVR.N	3
step04.16242.16242.2	6.7252	0.5862	2429.778	2428.7913	1	2253.9	61.4%	5	K.KGDSSAEELKLATQLTGPVMPVR.N	2
step04.13035.13035.2	3.5431	0.4151	1384.206	1383.6852	1	1298.3	79.2%	5	K.LATQLTGPVMPVR.N	2
step04.11103.11103.2	3.3169	0.4156	1399.481	1399.6847	1	859.7	70.8%	4	K.LATQLTGPVM*PVR.N	2

gi|7705706|ref|NP_057

29.8%

9477

9.5

40S ribosomal protein S27-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.6746.6746.2	2.5761	0.1993	1310.299	1310.4349	2	414.7	60.0%	1	R.DLLHPSLEEEK.K	2
	step05.14449.14449.2	3.4694	0.3476	1684.438	1684.9409	1	465.9	57.7%	2	K.RLVQSPNSYFMDVK.C	2 2
	step02.13140.13140.2	3.8483	0.4761	1530.147	1528.7545	1	1075.9	79.2%	3	R.LVQSPNSYFMDVK.C	2 2

Similarities: gi|4506711|ref|NP_001(2:1)

gi|4503521|ref|NP_001

29.7%

445

52221

6.0

eukaryotic translation initiation factor 3 subunit E [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.650.650.2	2.4138	0.1262	2106.986	2107.3906	30	266.8	35.3%	2	K.LDLLSDTNMVDFAM*DVYK.N	2
*	step02.1508.1508.2	2.9743	0.2677	2123.415	2123.39	1	522.8	47.1%	1	K.LDLLSDTNMVDFAMDVYK.N	2
*	step05.17143.17143.2	3.0384	0.3466	1613.141	1613.8644	1	913.3	66.7%	1	R.MLFDYLADKHGFR.Q	2
*	step05.14983.14983.2	3.1935	0.3295	1697.882	1698.8627	1	505.1	62.5%	4	K.HGFRQEYLDTLYR.Y	2
*	step02.21863.21863.2	5.9263	0.5082	2209.892	2208.5015	1	2080.8	61.1%	1	K.LASEILMQNWDAAMEDLTR.L	2
*	step03.18005.18005.2	3.4518	0.3404	1234.318	1233.4336	1	1288.6	93.8%	4	R.LFIFETFCR.I	2
*	step03.16949.16949.3	4.3567	0.4756	2715.507	2715.094	1	840.0	36.4%	3	R.IHQCISINMLADKLNMTPEEAER.W	3
*	step03.15015.15016.3	5.4617	0.5405	2748.067	2747.0928	1	1020.6	38.6%	1	R.IHQCISINMLADKLNMTPEEAER.W	3
*	step03.16719.16719.2	2.4625	0.0824	914.071	914.1293	1	655.9	91.7%	2	R.WIVNLIR.N	2
*	step04.13751.13751.2	6.6751	0.6049	2185.593	2184.5044	1	1706.2	68.4%	4	K.LGHVVMGNNAVSPYQQVIEK.T	2
*	step04.12909.12909.2	6.083	0.5862	2199.858	2200.5037	1	1919.8	68.4%	5	K.LGHVVM*GNNAVSPYQQVIEK.T	2
*	step04.12893.12893.3	3.7584	0.2733	2200.167	2200.5037	9	916.3	35.5%	1	K.LGHVVM*GNNAVSPYQQVIEK.T	3
*	step01.7205.7205.2	3.4968	0.1715	1573.931	1573.601	1	1778.4	80.8%	1	R.SEAPNWATQDSGFY.-	2

gi|4503483|ref|NP_001

29.5%

858

95338

6.8

elongation factor 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.520.520.2	2.6707	0.1606	2205.22	2205.449	1	1091.4	52.8%	1	K.STAISLFYELSENDLNFIK.Q	2
*	step04.20891.20891.3	4.6315	0.3636	2803.359	2803.0762	1	2080.3	36.5%	6	K.DGAGFLINLIDSPGHVDFSSEVTAALR.V	3
*	step06.20922.20922.2	2.4839	0.3674	2804.451	2803.0762	1	161.8	30.8%	1	K.DGAGFLINLIDSPGHVDFSSEVTAALR.V	2
*	step02.19716.19716.2	3.1974	0.3432	2221.703	2221.4946	1	596.5	50.0%	2	R.ALLELQLEPEELYQTFQR.I	2
*	step02.19520.19520.2	3.9033	0.3676	1494.924	1495.7808	1	1867.8	86.4%	2	R.TFCQLILDPIFK.V	2
*	step05.14894.14894.2	2.8098	0.3211	1212.724	1213.4739	1	1120.8	88.9%	2	K.VFDAIMNFKK.E	2
*	step04.13368.13368.2	2.4243	0.2401	1228.502	1229.4733	8	392.2	66.7%	1	K.VFDAIM*NFKK.E	2
*	step03.14382.14382.2	2.9216	0.3945	1041.024	1040.3252	1	1104.4	87.5%	3	K.GPLMMYISK.M	2
*	step03.13269.13269.2	3.0839	0.1778	1055.746	1056.3246	1	1216.7	81.2%	2	K.GPLMM*YISK.M	2
*	step04.11088.11088.2	2.5323	0.3978	1072.72	1072.324	1	1007.9	87.5%	2	K.GPLMMYISK.M	2
*	step04.12335.12335.2	3.0687	0.4206	1402.726	1403.6515	1	817.4	70.0%	1	K.KEDLYLKPIQR.T	2
*	step04.12125.12125.2	3.9496	0.3702	1616.598	1616.7834	1	900.0	65.4%	2	K.TGTITTFEHAHNMR.V	2
*	step02.10180.10180.2	2.5488	0.2475	891.134	891.0494	1	824.7	85.7%	1	K.FSVSPVVR.V	2
*	step01.10890.10890.2	2.4259	0.2368	1596.203	1595.7244	3	414.1	50.0%	1	R.ETVSEESNVLCLSK.S	2
*	step02.13944.13944.2	2.3883	0.3282	2143.853	2144.3306	1	218.9	39.5%	1	K.ARPFPDGLAEDIDKGEVSAR.Q	2
*	step02.14105.14105.3	5.8841	0.4688	2145.005	2144.3306	1	3082.1	52.6%	2	K.ARPFPDGLAEDIDKGEVSAR.Q	3
*	step06.19307.19307.2	5.0647	0.47	2233.886	2234.53	1	1233.0	63.2%	3	R.KIWCFGPDGTGPNILTDITK.G	2
*	step05.13534.13534.2	2.6825	0.2901	1537.073	1535.7666	1	295.4	58.3%	1	R.RCLYASVLTAQPR.L	2
*	step03.417.417.3	6.3397	0.5898	2992.753	2991.4875	1	2388.6	39.0%	1	R.LMEPIYLVEIQCPEQVVGGIYGVLNR.K	3
*	step03.16752.16752.2	4.0264	0.4929	1800.601	1800.9917	1	1195.7	80.0%	3	K.AYLPVNESFGFTADLR.S	2
*	step02.21282.21282.2	4.2712	0.4116	1744.259	1744.0248	1	756.9	63.3%	1	K.GLKEGIPALDNFLDKL.-	2
*	step02.21092.21092.2	2.5027	0.2155	1445.104	1445.642	1	387.6	58.3%	1	K.EGIPALDNFLDKL.-	2

gi|310133085|ref|XP_0

29.4%

102

11494

9.7

PREDICTED: 60S ribosomal protein L3-like, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19175.19175.3	4.566	0.508	2438.271	2438.7864	1	1530.0	46.4%	5	K.SINPLGGFVHYGEVTNDFVMLK.G	3 3 3
step04.19470.19471.2	2.2658	0.2242	2439.242	2438.7864	78	109.8	28.6%	1	K.SINPLGGFVHYGEVTNDFVMLK.G	2 2 2
step06.19509.19509.3	5.2605	0.4965	2454.617	2454.786	1	2083.6	52.4%	7	K.SINPLGGFVHYGEVTNDFVM*LK.G	3 3 3
step06.19523.19523.2	5.0876	0.5403	2455.272	2454.786	1	801.9	54.8%	7	K.SINPLGGFVHYGEVTNDFVM*LK.G	2 2 2
step06.14016.14016.2	2.2937	0.1582	908.044	908.1433	2	552.2	78.6%	2	K.AFM*GPLKK.D	2 2 2

Similarities: gi|76496472|ref|NP_00(5:0)
gi|4506649|ref|NP_000(5:0)

U	gi\|4501885\|ref\|NP_001	9	20	29.3%	375	41737	5.5	actin, cytoplasmic 1 [Homo sapiens]
U	gi\|4501887\|ref\|NP_001	9	20	29.3%	375	41793	5.5	actin, cytoplasmic 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17530.17530.2	3.2004	0.4355	1518.004	1516.6869	1	1062.3	85.0%	1	K.IWHHTFYNELR.V	2 2 2
step02.13421.13421.2	4.5234	0.3701	1955.795	1955.2435	1	961.2	64.7%	3	R.VAPEEHPVLLTEAPLNPK.A	2
step06.18971.18971.3	7.1464	0.5468	3186.458	3185.5994	1	2173.9	36.2%	6	R.TTGIVMDSGDGVTHTVPIYEGYALPHAILR.L	3
step03.17030.17030.3	6.4386	0.3654	3202.756	3201.5986	1	1691.8	32.8%	5	R.TTGIVM*DSGDGVTHTVPIYEGYALPHAILR.L	3
step02.14016.14016.2	3.5943	0.2628	1791.424	1791.94	1	1565.0	76.7%	1	K.SYELPDGQVITIGNER.F	2 2 2 2 2
step02.1932.1932.2	2.8665	0.2941	2217.782	2216.4568	1	534.4	40.0%	1	K.DLYANTVLSGGTTMYPGIADR.M	2
step03.12402.12402.2	2.9353	0.1445	1549.61	1549.8818	1	1144.5	69.2%	1	R.MQKEITALAPSTMK.I	2 2 2
step02.8979.8979.1	1.8758	0.2438	1161.523	1162.3821	1	252.7	60.0%	1	K.EITALAPSTMK.I	1 1 1
step02.8931.8931.2	2.3177	0.1916	1162.257	1162.3821	2	651.0	70.0%	1	K.EITALAPSTMK.I	2 2 2

Similarities: gi|63055057|ref|NP_00(1:8)
gi|4501881|ref|NP_001(5:4)
gi|213688375|ref|NP_0(4:5)
gi|134133226|ref|NP_0(2:7)

gi|28195394|ref|NP_77

29.2%

130

13995

10.9

histone H2A type 2-B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.12281.12281.1	1.9196	0.1569	944.699	945.1002	13	247.0	56.2%	2	R.AGLQFPVGR.V	1 1 1 1 1
step03.12248.12248.2	3.1352	0.2058	945.084	945.1002	1	766.3	81.2%	2	R.AGLQFPVGR.V	2 2 2 2 2
step06.27814.27814.3	4.8763	0.4955	2918.398	2917.3486	1	1523.4	32.1%	2	R.VGAGAPVYLAAVLEYLTAEILELAGNAAR.D	3 3 3 3 3

gi|4506669|ref|NP_000

28.9%

114

11514

4.3

60S acidic ribosomal protein P1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18585.18585.2	3.8624	0.4305	1703.642	1703.964	1	769.9	60.0%	4	K.AAGVNVEPFWPGLFAK.A	2
	step01.8118.8118.2	3.2549	0.2034	2030.329	2030.9481	1	1152.1	56.2%	1	K.KEESEES#DDDMGFGLFD.-	2 2 2
	step01.7488.7488.2	4.1759	0.2032	2046.9	2046.9475	1	1650.9	70.8%	2	K.KEESEES#DDDM*GFGLFD.-	2 2 2
	step01.7730.7730.2	4.0451	0.5351	2109.988	2110.928	1	1090.9	54.7%	2	K.KEES#EES#DDDMGFGLFD.-	2 2 2
	step01.6956.6956.2	4.1889	0.454	2126.175	2126.9275	1	791.9	57.8%	2	K.KEES#EES#DDDM*GFGLFD.-	2 2 2

Similarities: gi|4506671|ref|NP_000(4:1)
gi|47524167|ref|NP_99(4:1)

gi|4504901|ref|NP_002

28.8%

521

57887

5.0

importin subunit alpha-4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15905.15905.3	4.2733	0.4441	3013.772	3014.255	1	1214.8	31.2%	2	R.VQNTSLEAIVQNASSDNQGIQLSAVQAAR.K	3
*	step02.16002.16002.2	3.5504	0.5391	3014.878	3014.255	1	262.2	44.6%	1	R.VQNTSLEAIVQNASSDNQGIQLSAVQAAR.K	2
	step04.15825.15825.2	3.7182	0.3045	1824.679	1825.0994	1	633.6	60.0%	8	R.KLLSSDRNPPIDDLIK.S	2 2
	step04.15544.15544.3	4.1541	0.3	1825.576	1825.0994	1	843.4	45.0%	5	R.KLLSSDRNPPIDDLIK.S	3 3
	step02.14255.14255.2	3.625	0.2859	1697.743	1696.9265	1	1127.4	67.9%	4	K.LLSSDRNPPIDDLIK.S	2 2
*	step05.18874.18874.2	3.918	0.4516	1508.385	1507.7963	1	1117.2	83.3%	10	K.SGILPILVHCLER.D	2
*	step05.20528.20528.3	4.2948	0.3879	3170.988	3171.5024	1	743.7	26.9%	4	R.LLHSPHQNVCEQAVWALGNIIGDGPQCR.D	3
*	step06.18193.18193.2	3.9442	0.439	1393.574	1392.6456	1	1429.2	80.0%	6	R.NVTWVMVNLCR.H	2
	step02.14931.14931.2	2.2087	0.3088	1489.528	1489.6581	1	476.2	57.7%	1	K.EAAWAISNLTISGR.K	2 2
	step06.17616.17616.2	3.8604	0.4577	1617.546	1617.831	1	672.6	67.9%	1	K.EAAWAISNLTISGRK.D	2 2
*	step04.1334.1335.2	5.5394	0.4682	1812.587	1812.1006	1	2613.6	84.4%	11	K.DAQVVQVVLDGLSNILK.M	2
*	step04.1310.1310.3	5.9052	0.5099	1813.339	1812.1006	1	2110.5	60.9%	7	K.DAQVVQVVLDGLSNILK.M	3
*	step01.13271.13271.2	3.8206	0.453	2309.947	2309.4844	1	894.8	52.5%	3	K.MAEDEAETIGNLIEECGGLEK.I	2

Similarities: gi|34485722|ref|NP_00(5:8)

gi|310129361|ref|XP_0

28.5%

826

91986

5.3

PREDICTED: DNA damage-binding protein 1-like isoform 6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16577.16577.2	4.3357	0.4571	1688.564	1688.0043	1	1835.5	78.6%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step06.18702.18702.2	3.1309	0.379	1205.543	1204.5101	1	1419.0	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step05.14327.14327.2	2.581	0.3869	1220.343	1220.5095	2	358.8	77.8%	2	K.IAVM*ELFRPK.G	2 2 2 2
step04.18418.18418.2	2.9426	0.324	1034.122	1034.2736	1	918.1	75.0%	4	K.DLLFILTAK.Y	2 2 2 2
step05.15713.15713.2	4.2164	0.4529	1644.573	1644.8981	1	1559.4	83.3%	3	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.14986.14986.2	2.8436	0.3441	1084.213	1084.2927	1	461.7	81.2%	3	K.LPSFELLHK.E	2 2 2 2
step02.12480.12480.2	2.3011	0.1007	1115.299	1115.3286	1	1099.3	88.9%	1	K.EMLGGEIIPR.S	2 2 2 2
step05.11930.11930.2	3.0115	0.3365	1313.884	1313.5715	1	735.6	77.3%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step02.10110.10110.2	2.3819	0.3399	1185.762	1185.3986	2	289.1	60.0%	1	K.VTLGTQPTVLR.T	2 2 2 2
step05.14197.14197.2	3.9746	0.4375	2584.91	2585.8047	1	698.2	47.7%	3	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step06.17016.17016.3	4.0366	0.2186	2585.398	2585.8047	1	768.0	33.0%	2	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step06.17461.17461.2	6.6834	0.5997	2063.079	2062.2993	1	3031.1	84.4%	5	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.11111.11111.3	4.8332	0.5051	2954.218	2954.1514	1	1754.9	34.5%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step03.16433.16433.2	4.4489	0.4827	1884.66	1885.1271	1	1250.7	67.9%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step04.16399.16399.3	4.1967	0.2501	1885.83	1885.1271	1	1145.6	51.8%	2	R.TECNHYNNIMALYLK.T	3 3 3 3
step02.17392.17392.2	3.3167	0.4078	1466.044	1465.7432	1	1600.8	75.0%	1	K.TKGDFILVGDLMR.S	2 2 2 2
step05.17713.17713.2	4.1365	0.5869	2181.957	2181.5403	1	406.3	50.0%	8	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step04.17783.17783.3	6.1375	0.5388	2182.4	2181.5403	1	2552.3	51.4%	3	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3
step03.9.9.3	7.1605	0.583	2651.841	2650.9648	1	1744.4	44.6%	8	R.KTEPATGFIDGDLIESFLDISRPK.M	3 3 3
step03.514.514.2	2.7635	0.1089	2522.087	2522.7917	1	782.5	45.5%	1	K.TEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.22060.22061.2	3.2996	0.2568	1803.063	1803.0042	1	343.4	53.3%	2	R.EATADDLIKVVEELTR.I	2 2 2

Similarities: gi|310129363|ref|XP_0(21:0)
gi|148529014|ref|NP_0(21:0)
gi|310129365|ref|XP_0(18:3)

gi|16507237|ref|NP_00

28.4%

654

72333

5.2

78 kDa glucose-regulated protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8746.8746.2	5.0424	0.5075	1680.156	1678.7817	1	1277.9	75.0%	3	K.NQLTSNPENTVFDAK.R	2
*	step06.15364.15364.2	4.219	0.4088	1605.453	1605.817	1	1592.1	85.7%	10	K.TKPYIQVDIGGGQTK.T	2
*	step02.17007.17007.2	3.9478	0.4886	1537.242	1537.8029	1	1454.0	84.6%	3	K.TFAPEEISAMVLTK.M	2
*	step06.17191.17191.2	5.0473	0.3046	2016.902	2017.2766	1	1229.3	70.6%	2	K.KVTHAVVTVPAYFNDAQR.Q	2
*	step04.14229.14229.2	5.0834	0.4839	1888.607	1889.1038	1	1546.5	84.4%	4	K.VTHAVVTVPAYFNDAQR.Q	2
*	step04.14121.14121.3	4.1384	0.2695	1888.675	1889.1038	1	1193.8	45.3%	1	K.VTHAVVTVPAYFNDAQR.Q	3
*	step02.11834.11834.2	3.1492	0.4138	1219.178	1218.4089	1	1039.2	81.8%	1	K.DAGTIAGLNVMR.I	2
*	step02.14410.14410.2	3.3555	0.4238	1816.927	1817.079	1	1459.8	71.9%	2	R.IINEPTAAAIAYGLDKR.E	2
*	step02.16670.16670.2	3.7727	0.4827	1513.046	1513.743	1	1518.9	81.8%	2	R.AKFEELNMDLFR.S	2
*	step02.14465.14465.2	2.4269	0.1732	1529.475	1529.7424	1	396.4	50.0%	1	R.AKFEELNM*DLFR.S	2
*	step02.13262.13262.2	4.9226	0.4542	1590.762	1589.7728	1	2720.0	82.1%	2	K.KSDIDEIVLVGGSTR.I	2
*	step03.12569.12569.2	5.3526	0.5943	1966.501	1966.1815	1	2549.1	76.5%	2	K.KSQIFSTASDNQPTVTIK.V	2
*	step02.11342.11342.2	4.2758	0.4798	1837.61	1838.0087	1	2197.1	75.0%	3	K.SQIFSTASDNQPTVTIK.V	2
*	step03.16604.16605.2	4.7866	0.5288	1935.718	1935.1724	1	1421.6	79.4%	9	K.DNHLLGTFDLTGIPPAPR.G	2
*	step02.14668.14668.2	3.1534	0.3601	1976.199	1976.0886	1	1539.8	66.7%	2	K.IEWLESHQDADIEDFK.A	2
*	step02.14376.14376.2	4.1397	0.45	2175.715	2175.3398	1	481.1	52.9%	1	K.IEWLESHQDADIEDFKAK.K	2
*	step03.14812.14812.2	4.8985	0.4218	1654.125	1654.9727	1	2319.7	88.5%	3	K.KKELEEIVQPIISK.L	2
*	step03.14782.14782.3	3.5915	0.1031	1655.21	1654.9727	24	989.5	44.2%	1	K.KKELEEIVQPIISK.L	3
*	step02.13556.13556.2	2.6692	0.1302	1398.433	1398.6268	1	795.5	63.6%	1	K.ELEEIVQPIISK.L	2

gi|4506687|ref|NP_001

28.3%

145

17040

10.4

40S ribosomal protein S15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.748.748.3	5.2962	0.5478	2590.271	2589.9268	1	1398.9	41.7%	2	R.GVDLDQLLDMSYEQLMQLYSAR.Q	3
*	step04.652.652.2	5.7999	0.6002	2590.912	2589.9268	1	2165.9	54.8%	2	R.GVDLDQLLDMSYEQLMQLYSAR.Q	2
*	step03.1344.1346.3	4.8623	0.4706	2605.067	2605.926	1	1632.6	40.5%	2	R.GVDLDQLLDMSYEQLM*QLYSAR.Q	3
*	step03.1368.1368.2	4.0341	0.5115	2605.574	2605.926	1	2133.6	57.1%	2	R.GVDLDQLLDMSYEQLM*QLYSAR.Q	2
*	step03.1688.1688.3	4.6849	0.2094	2605.84	2605.926	1	795.5	33.3%	1	R.GVDLDQLLDM*SYEQLMQLYSAR.Q	3
*	step03.873.874.3	4.7231	0.484	2622.463	2621.9255	1	1789.8	39.3%	1	R.GVDLDQLLDMSYEQLMQLYSAR.Q	3
*	step03.858.858.2	4.7091	0.5203	2622.94	2621.9255	1	1492.7	50.0%	2	R.GVDLDQLLDMSYEQLMQLYSAR.Q	2
*	step02.2103.2103.2	3.5566	0.465	2055.039	2054.484	1	685.7	50.0%	2	R.DMIILPEMVGSMVGVYNGK.T	2
*	step02.18744.18744.2	3.1166	0.3235	2071.715	2070.4832	1	246.4	47.2%	1	R.DM*IILPEMVGSMVGVYNGK.T	2
*	step02.14904.14904.2	3.9473	0.3388	2085.92	2086.4827	1	1530.0	69.4%	1	R.DMIILPEMVGSMVGVYNGK.T	2

U	gi\|14141152\|ref\|NP_00	24	51	28.2%	730	77516	8.7	heterogeneous nuclear ribonucleoprotein M isoform a [Homo sapiens]
U	gi\|157412270\|ref\|NP_1	24	51	29.8%	691	73621	8.8	heterogeneous nuclear ribonucleoprotein M isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14480.14480.2	2.6984	0.2804	1117.426	1117.3228	1	684.1	87.5%	3	K.WQSLKDLVK.E	2
step03.16850.16850.2	3.4146	0.3892	1771.322	1769.9945	1	342.9	53.3%	2	K.VGEVTYVELLM*DAEGK.S	2
step02.13841.13841.2	3.0573	0.2889	1427.518	1427.6267	1	771.4	62.5%	1	R.LGSTVFVANLDYK.V	2
step04.17037.17037.2	5.9675	0.5638	2179.699	2179.573	1	1109.1	59.1%	7	K.GIGMGNIGPAGMGMEGIGFGINK.M	2
step04.17097.17097.3	5.9692	0.3274	2179.884	2179.573	1	1991.0	40.9%	6	K.GIGMGNIGPAGMGMEGIGFGINK.M	3
step04.15835.15835.3	4.0172	0.1479	2195.096	2195.5725	1	1584.4	38.6%	1	K.GIGMGNIGPAGM*GMEGIGFGINK.M	3
step04.15531.15531.3	3.6722	0.1229	2195.119	2195.5725	1	1003.5	36.4%	1	K.GIGMGNIGPAGMGM*EGIGFGINK.M	3
step04.15803.15803.2	4.5302	0.0926	2195.794	2195.5725	1	694.1	47.7%	1	K.GIGMGNIGPAGM*GMEGIGFGINK.M	2
step04.14441.14441.2	4.8232	0.3489	2210.52	2211.5718	1	769.4	52.3%	2	K.GIGMGNIGPAGMGMEGIGFGINK.M	2
step04.13241.13241.2	4.5505	0.6237	2226.638	2227.5713	1	904.5	54.5%	1	K.GIGMGNIGPAGMGM*EGIGFGINK.M	2
step02.13336.13337.2	4.2473	0.4589	1716.624	1715.9807	1	1032.8	62.5%	1	K.MGGMEGPFGGGMENMGR.F	2
step02.12689.12689.1	1.9563	0.1865	1114.708	1115.3052	11	317.7	61.1%	2	R.INEILSNALK.R	1
step03.13926.13926.2	3.5753	0.2579	1271.324	1271.4915	1	1347.8	85.0%	2	R.INEILSNALKR.G	2
step03.9958.9958.2	2.7453	0.4246	1102.568	1102.2736	1	890.4	80.0%	3	R.MGAGLGHGMDR.V	2
step03.12906.12906.2	4.2819	0.529	1631.426	1630.8718	1	597.5	75.0%	2	R.MGPLGLDHM*ASSIER.M	2
step02.9716.9716.2	3.54	0.3221	1646.308	1646.8712	1	417.1	75.0%	2	R.MGPLGLDHMASSIER.M	2
step02.8238.8238.2	3.1616	0.4629	1158.042	1158.3339	1	1484.5	90.0%	1	R.MGAGMGFGLER.M	2
step02.9534.9534.2	2.4457	0.4723	1188.973	1189.4342	1	436.2	86.4%	1	R.MVPAGMGAGLER.M	2
step03.12800.12800.2	3.4206	0.3921	1428.545	1428.7064	1	1277.9	75.0%	4	R.MGPAMGPALGAGIER.M	2
step03.10925.10925.2	3.28	0.2683	1443.788	1444.7058	1	1976.1	85.7%	2	R.MGPAM*GPALGAGIER.M	2
step02.8547.8547.2	3.8939	0.5157	1460.613	1460.7052	1	1670.6	85.7%	2	R.MGPAMGPALGAGIER.M	2
step02.12018.12018.2	2.7844	0.3444	1383.424	1384.5673	1	963.1	64.3%	1	R.MGLAMGGGGGASFDR.A	2
step06.16546.16546.2	4.5997	0.5357	2036.107	2036.1555	1	1113.7	54.5%	2	R.GNFGGSFAGSFGGAGGHAPGVAR.K	2
step02.12470.12470.2	4.5833	0.4833	1810.461	1809.9935	1	991.0	71.4%	1	K.DKFNECGHVLYADIK.M	2

gi|46367787|ref|NP_00

28.1%

636

70671

9.5

polyadenylate-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14659.14659.1	1.91	0.2521	1157.711	1158.3749	1	259.3	65.0%	1	K.FSPAGPILSIR.V	1 1 1 1
	step05.14614.14614.2	2.2341	0.3204	1158.005	1158.3749	1	574.1	90.0%	2	K.FSPAGPILSIR.V	2 2 2 2
	step02.12948.12948.2	3.2989	0.3757	1929.538	1930.0663	1	1080.2	59.4%	2	R.SLGYAYVNFQQPADAER.A	2 2
	step02.14236.14236.2	2.6498	0.3435	1267.057	1267.4767	1	546.1	70.0%	1	R.ALDTMNFDVIK.G	2 2
	step05.13246.13246.2	2.3369	0.3136	1063.292	1063.275	2	663.1	72.2%	1	R.KSGVGNIFIK.N	2 2
	step03.11210.11210.2	2.3083	0.1952	819.226	818.98315	2	516.1	92.9%	1	K.FGPALSVK.V	2 2
*	step03.14363.14363.2	4.1382	0.3663	1414.723	1413.6	1	1584.3	87.5%	5	R.KEFSPFGTITSAK.V	2
	step02.15089.15089.2	4.1756	0.5202	1664.202	1663.8021	1	1286.0	67.9%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2
	step06.17397.17397.2	4.0049	0.4878	1543.655	1543.8783	1	1093.2	84.6%	3	R.IVATKPLYVALAQR.K	2 2
	step06.17409.17409.3	3.7209	0.428	1543.911	1543.8783	1	895.1	53.8%	2	R.IVATKPLYVALAQR.K	3 3
*	step06.14533.14533.3	4.1364	0.3336	2382.43	2382.686	1	1468.6	33.3%	1	R.VANTSTQTMGPRPAAAAAAATPAVR.T	3
	step06.18306.18306.2	3.8561	0.4244	1654.508	1654.0131	1	1256.1	78.6%	2	R.LFPLIQAM*HPTLAGK.I	2 2
	step03.358.358.3	5.683	0.5274	2742.324	2742.1626	1	1806.3	41.3%	8	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
	step02.21158.21158.3	5.2884	0.4644	2758.766	2758.162	1	1624.1	39.1%	2	K.ITGM*LLEIDNSELLHMLESPESLR.S	3 3
	step02.20488.20488.3	5.3817	0.5277	2759.474	2758.162	1	976.4	32.6%	5	K.ITGMLLEIDNSELLHM*LESPESLR.S	3 3
	step02.19181.19181.3	3.7417	0.316	2772.979	2774.1614	1	724.2	27.2%	1	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
	step03.13707.13707.2	5.6239	0.5766	1695.035	1694.9138	1	2754.4	83.3%	4	R.SKVDEAVAVLQAHQAK.E	2 2
	step04.13781.13781.3	4.878	0.5105	1695.267	1694.9138	1	1963.7	60.0%	2	R.SKVDEAVAVLQAHQAK.E	3 3

Similarities: gi|208431833|ref|NP_0(7:11)
gi|45238849|ref|NP_11(9:9)
gi|185135971|ref|NP_0(4:14)
gi|109948285|ref|NP_0(2:16)

gi|18104948|ref|NP_00

28.1%

160

18565

10.5

60S ribosomal protein L21 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17403.17403.2	2.5196	0.3625	1372.6	1372.6642	4	246.3	63.6%	1	R.KHGVVPLATYMR.I	2
*	step06.16979.16979.2	3.4389	0.4291	1244.404	1244.4912	1	917.8	85.0%	4	K.HGVVPLATYMR.I	2
*	step05.14281.14281.1	2.7327	0.2939	1244.71	1244.4912	1	281.1	65.0%	4	K.HGVVPLATYMR.I	1
*	step06.15521.15521.2	3.2054	0.352	1261.396	1260.4906	1	841.0	80.0%	4	K.HGVVPLATYM*R.I	2
*	step06.15807.15807.2	5.3675	0.3834	1641.796	1641.8958	1	2706.1	89.3%	11	R.VYNVTQHAVGIVVNK.Q	2
*	step05.12809.12809.3	4.414	0.4557	1642.017	1641.8958	1	1094.7	51.8%	2	R.VYNVTQHAVGIVVNK.Q	3
*	step02.16605.16605.2	3.467	0.3901	2094.426	2095.358	1	969.2	58.8%	1	R.TNGKEPELLEPIPYEFM*A.-	2
*	step02.16604.16604.3	4.0442	0.3126	2095.683	2095.358	1	700.9	36.8%	1	R.TNGKEPELLEPIPYEFM*A.-	3

gi|21735415|ref|NP_00

28.0%

599

65171

4.6

major centromere autoantigen B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5002.5002.2	3.5664	0.2955	1455.5	1455.5953	1	1712.2	81.8%	4	R.IIQEVEENPDLR.K	2
*	step06.19000.19000.2	3.957	0.3545	1587.625	1587.888	1	1442.4	76.9%	4	R.RFNIPPSTLSTILK.N	2
*	step03.16916.16916.2	2.8265	0.1382	1432.337	1431.7017	1	954.0	79.2%	3	R.FNIPPSTLSTILK.N	2
*	step06.17143.17143.2	2.2594	0.2034	1437.801	1437.7957	1	655.1	65.4%	1	R.AAGLPVKGIILKEK.A	2
*	step02.1983.1983.2	4.14	0.4348	2141.488	2141.3037	1	1199.1	58.3%	4	R.IAEELGMDDFTASNGWLDR.F	2
*	step04.8286.8286.2	2.884	0.3588	1129.384	1129.2455	1	901.9	80.0%	6	R.HGVVSCSGVAR.A	2
*	step02.8855.8855.2	4.3919	0.4013	2213.506	2213.3496	1	1016.0	60.9%	3	R.TPAAPASPAAVPSEGSGGSTTGWR.A	2
*	step05.15961.15961.2	5.2839	0.5418	2254.089	2253.618	1	1268.8	59.5%	6	R.LSVLLCANADGSEKLPPLVAGK.S	2
*	step05.9936.9936.1	1.94	0.3464	794.497	795.0047	1	579.7	71.4%	3	K.LPPLVAGK.S	1
*	step02.6891.6891.2	3.0482	0.4602	1553.313	1553.6493	1	594.4	67.9%	2	R.AGQAGLPCDYTANSK.G	2
*	step06.16357.16357.2	2.8264	0.2525	898.455	898.1314	1	832.9	100.0%	1	R.RVLLLAGR.L	2
*	step03.12180.12180.1	1.966	0.2242	741.701	741.94507	1	321.5	83.3%	1	R.VLLLAGR.L	1
*	step02.8300.8301.2	4.5065	0.4336	1233.244	1232.369	1	2020.0	95.5%	2	R.LAAQSLDTSGLR.H	2
*	step02.11304.11304.2	4.1346	0.4799	1621.741	1621.7733	1	1697.6	75.0%	1	R.EAGFGGGPNATITTSLK.S	2

gi|56237027|ref|NP_00

27.9%

577

63481

9.2

insulin-like growth factor 2 mRNA-binding protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.14136.14136.2	4.2658	0.3191	1876.487	1877.0848	1	2281.5	78.1%	1	K.LYIGNLNESVTPADLEK.V	2 2
*	step02.7360.7360.2	3.8346	0.4401	1873.689	1874.0011	1	582.8	53.1%	1	K.VSYIPDEQIAQGPENGR.R	2
*	step02.10731.10731.2	2.8647	0.3387	2030.717	2030.1875	1	280.3	44.1%	3	K.VSYIPDEQIAQGPENGRR.G	2
*	step04.17457.17457.2	3.6871	0.4901	1471.811	1472.7969	1	793.3	80.8%	14	R.LLVPTQYVGAIIGK.E	2
*	step05.17396.17396.3	4.18	0.35	1472.403	1472.7969	2	1291.2	50.0%	6	R.LLVPTQYVGAIIGK.E	3
*	step06.36085.36085.2	2.5162	0.1213	1706.406	1705.6765	2	346.6	38.5%	1	K.EAKDT#KT#ADEVPLK.I	2
*	step05.16176.16176.3	3.6859	0.2929	1996.088	1995.271	1	809.0	39.7%	1	K.TADEVPLKILAHNNFVGR.L	3
	step02.17028.17028.2	2.956	0.2529	1863.718	1864.0892	1	1208.7	63.3%	2	K.ITISSLQDLTLYNPER.T	2 2
	step02.13334.13334.2	3.4736	0.4403	1431.261	1431.7251	1	936.0	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
	step02.12314.12314.2	2.6874	0.1775	1209.219	1209.3755	1	836.3	83.3%	2	K.LKEENFFGPK.E	2 2
	step02.12560.12560.2	4.621	0.3204	1695.204	1694.909	1	1455.1	84.6%	2	K.LKEENFFGPKEEVK.L	2 2
	step05.15858.15858.3	6.2749	0.4658	2444.588	2444.7708	1	1666.0	48.7%	3	K.LKEENFFGPKEEVKLETHIR.V	3 3
	step02.15024.15024.2	3.8884	0.4065	1854.723	1854.0975	1	982.1	59.4%	2	K.TVNELQNLTAAEVVVPR.D	2 2
	step06.15942.15942.2	2.8039	0.1106	1522.518	1522.7565	1	533.4	66.7%	2	K.IIGHFYASQMAQR.K	2 2
	step05.11600.11600.2	3.2405	0.2492	1538.12	1538.7559	1	1061.1	79.2%	3	K.IIGHFYASQM*AQR.K	2 2
	step04.13509.13510.2	3.0798	0.232	1057.328	1056.284	1	788.5	81.2%	3	K.IRDILAQVK.Q	2 2

Similarities: gi|238624257|ref|NP_0(10:6)
gi|30795212|ref|NP_00(1:15)
gi|56118219|ref|NP_00(1:15)

gi|7705433|ref|NP_057

27.7%

564

66727

6.3

eukaryotic translation initiation factor 3 subunit L [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14334.14334.2	2.2559	0.1558	1096.988	1097.25	1	773.0	85.7%	1	K.NFIQYFHK.T	2
*	step02.21395.21395.2	2.5923	0.314	2757.83	2758.12	1	573.3	43.8%	1	K.NTPWPEAEAIAPQVGNDAVFLILYK.E	2
*	step03.20488.20488.3	3.674	0.359	2758.212	2758.12	17	826.7	26.0%	1	K.NTPWPEAEAIAPQVGNDAVFLILYK.E	3
*	step02.5564.5564.2	3.4177	0.2499	1266.13	1266.3822	1	864.9	83.3%	2	K.KSEEEIDFLR.S	2
*	step06.21226.21226.2	3.5388	0.3948	1369.52	1369.7002	1	2163.5	90.9%	5	K.MLGYFSLVGLLR.L	2
*	step06.20617.20617.2	4.5054	0.3449	1386.414	1385.6996	1	2280.8	90.9%	7	K.M*LGYFSLVGLLR.L	2
*	step06.18378.18378.2	3.5936	0.4813	1522.17	1521.7417	1	1157.7	83.3%	4	R.LHSLLGDYYQAIK.V	2
*	step04.16409.16409.3	4.0254	0.2455	1522.55	1521.7417	1	1308.3	52.1%	2	R.LHSLLGDYYQAIK.V	3
*	step02.12556.12556.2	3.5464	0.3579	1224.285	1224.3917	1	1386.1	94.4%	2	R.IDESIHLQLR.E	2
*	step02.15770.15771.2	2.2579	0.1533	1920.167	1920.0585	1	487.4	50.0%	1	K.GDPQVYEELFSYSCPK.F	2
*	step06.17188.17188.2	5.1431	0.426	2142.438	2141.373	1	990.8	70.6%	4	K.FLSPVVPNYDNVHPNYHK.E	2
*	step02.11471.11471.2	4.8995	0.3847	1850.441	1850.0227	1	2310.5	76.7%	1	K.VFSDEVQQQAQLSTIR.S	2
*	step02.17877.17877.2	4.3197	0.4973	1540.219	1539.7139	1	1769.9	79.2%	2	K.LAGFLDLTEQEFR.I	2
*	step03.15827.15827.2	2.5073	0.1769	861.182	861.1063	2	549.9	91.7%	2	R.IQLLVFK.H	2
*	step03.15850.15850.1	2.358	0.1873	861.635	861.1063	1	838.7	83.3%	2	R.IQLLVFK.H	1
*	step04.14829.14829.2	2.953	0.2757	1073.886	1074.2164	1	914.9	100.0%	2	R.RYGDFFIR.Q	2

gi|18644734|ref|NP_11

27.7%

563

65173

5.0

beta-catenin-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.4559.4559.3	6.0465	0.4743	2243.185	2243.3943	1	2992.1	55.9%	1	R.YREEEMTVVEEADDDKKR.L	3 2
*	step05.13532.13532.2	2.3479	0.2451	1038.539	1038.289	1	931.4	92.9%	1	K.MILTFEKR.S	2
*	step03.12135.12135.2	2.6767	0.331	1054.509	1054.2885	1	800.1	92.9%	2	K.M*ILTFEKR.S	2
*	step06.491.491.3	5.1057	0.5155	3432.7	3432.7498	1	1006.3	31.2%	4	R.HNPSTAEEQEMMENLFDSLCSCLMLSSNR.E	3
*	step06.17993.17993.3	4.8203	0.298	1797.064	1796.1913	1	2530.9	53.6%	2	R.FLKGEGLQLMNLMLR.E	3
*	step02.18884.18884.2	3.6328	0.4252	1375.199	1375.6866	1	1827.4	81.8%	2	K.GEGLQLMNLMLR.E	2
*	step02.16528.16528.2	2.4882	0.4463	933.089	933.1294	1	808.5	92.9%	2	K.FVDILGLR.T	2
*	step03.17936.17936.1	2.0138	0.2057	996.596	997.2785	1	340.5	64.3%	2	R.TIFPLFMK.S	1
*	step04.19221.19221.3	6.0368	0.5238	2408.499	2409.675	1	1697.2	40.0%	8	K.VGTTEKEHEEHVCSILASLLR.N	3
*	step05.19172.19172.2	5.174	0.5703	2409.812	2409.675	1	1710.5	60.0%	5	K.VGTTEKEHEEHVCSILASLLR.N	2
*	step04.19021.19021.2	3.2623	0.443	1793.127	1793.9957	1	271.8	53.6%	1	K.EHEEHVCSILASLLR.N	2
*	step03.14228.14228.2	2.7722	0.2375	917.653	918.1382	5	572.5	91.7%	4	R.LMELHFK.Y	2
*	step02.8499.8499.2	2.687	0.3453	1095.426	1096.2822	1	1008.6	88.9%	2	K.YLGAMQVADK.K	2
*	step02.8524.8524.1	1.9176	0.1483	1095.459	1096.2822	1	265.9	55.6%	2	K.YLGAMQVADK.K	1
*	step04.5112.5112.2	3.3974	0.4362	1999.718	2000.1117	1	703.8	60.0%	2	R.RGEIIDNDTEEEFYLR.R	2
*	step05.9403.9403.2	2.5118	0.4479	1026.465	1027.2263	1	487.0	71.4%	3	R.VHQILNM*R.G	2
*	step01.9225.9225.1	1.9336	0.3099	918.532	919.0995	4	391.4	71.4%	1	R.ILGLLENF.-	1

gi|5902102|ref|NP_008

27.7%

119

13282

11.6

small nuclear ribonucleoprotein Sm D1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.13242.13242.2	3.7423	0.3453	1555.645	1555.7612	1	720.1	70.8%	1	K.NREPVQLETLSIR.G	2
*	step03.1492.1492.3	5.2333	0.3881	2289.077	2288.664	1	1557.8	42.1%	3	R.YFILPDSLPLDTLLVDVEPK.V	3
*	step04.1583.1583.2	5.4244	0.5271	2289.144	2288.664	1	881.6	60.5%	9	R.YFILPDSLPLDTLLVDVEPK.V	2

gi|100913206|ref|NP_0

112

27.6%

1270

140958

6.8

ATP-dependent RNA helicase A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14104.14104.2	2.4424	0.3193	1025.981	1026.1702	1	1087.8	85.7%	1	R.DFVNYLVR.I	2
*	step03.17633.17633.3	9.2152	0.6203	3484.229	3483.698	1	5077.6	42.5%	10	R.KEEQEVQATLESEEVDLNAGLHGNWTLENAK.A	3
*	step05.13236.13236.2	3.9563	0.5848	1418.704	1417.6732	1	1883.4	87.5%	2	K.KLAAQSCALSLVR.Q	2
*	step02.12185.12185.2	3.2648	0.3916	1289.429	1289.5002	1	1937.6	86.4%	2	K.LAAQSCALSLVR.Q	2
*	step05.15739.15739.2	3.0547	0.4132	1779.289	1779.0292	1	375.0	66.7%	2	R.QLYHLGVVEAYSGLTK.K	2
*	step02.6992.6992.2	2.5634	0.2315	1076.445	1076.1875	4	786.3	81.2%	1	K.LAQFEPSQR.Q	2
*	step02.18172.18172.3	5.6388	0.4581	2489.121	2487.731	1	2273.3	48.7%	2	K.NELMYQLEQDHDLQAILQER.E	3
*	step02.18779.18779.2	3.3228	0.3416	2050.44	2051.245	1	825.6	65.6%	2	K.TTQVPQFILDDFIQNDR.A	2
*	step02.18806.18806.3	5.5278	0.5246	2052.188	2051.245	1	3271.1	56.2%	1	K.TTQVPQFILDDFIQNDR.A	3
*	step02.7058.7058.2	3.4007	0.3924	1359.439	1358.5194	1	1907.3	81.8%	3	R.AAECNIVVTQPR.R	2
*	step04.10661.10661.2	3.0036	0.1266	1088.198	1088.243	1	673.6	83.3%	3	R.RISAVSVAER.V	2
*	step02.13340.13340.3	4.054	0.421	1504.529	1504.6727	1	1655.1	54.2%	2	R.GISHVIVDEIHER.D	3
*	step02.13342.13342.2	3.7442	0.4684	1504.642	1504.6727	1	1353.7	79.2%	4	R.GISHVIVDEIHER.D	2
*	step02.4397.4397.3	6.5034	0.5335	3304.427	3303.306	1	2236.3	35.7%	1	K.KKDKDDDGGEDDDANCNLICGDEYGPETR.L	3
*	step02.4130.4130.3	6.3224	0.4765	3047.749	3046.9602	1	2003.7	41.3%	2	K.DKDDDGGEDDDANCNLICGDEYGPETR.L	3
*	step03.20844.20844.3	3.8652	0.3142	2434.247	2434.8342	1	1176.0	33.8%	1	R.LSMSQLNEKETPFELIEALLK.Y	3
*	step03.1614.1614.3	5.2798	0.4713	2449.983	2450.8337	1	2019.5	45.0%	2	R.LSM*SQLNEKETPFELIEALLK.Y	3
*	step03.1655.1655.2	3.0456	0.3484	2450.021	2450.8337	2	166.5	35.0%	2	R.LSM*SQLNEKETPFELIEALLK.Y	2
*	step04.1094.1094.2	2.8893	0.1852	1403.179	1403.645	1	738.5	77.3%	2	K.ETPFELIEALLK.Y	2
*	step05.14429.14429.2	2.7541	0.475	1465.59	1465.7245	1	863.0	81.8%	3	R.YQILPLHSQIPR.E	2
*	step04.13065.13065.2	2.8259	0.2362	1286.606	1286.5446	1	574.9	68.2%	2	R.KVFDPVPVGVTK.V	2
*	step05.14160.14160.2	4.185	0.5204	2085.682	2086.3162	1	900.5	64.7%	2	K.LFTAHNNM*TNYATVWASK.T	2
*	step05.14882.14882.3	3.9673	0.3508	1222.654	1222.4589	1	962.0	57.5%	2	R.TPLHEIALSIK.L	3
*	step05.14858.14858.1	2.265	0.1122	1222.699	1222.4589	1	552.4	70.0%	3	R.TPLHEIALSIK.L	1
*	step05.14946.14946.2	3.0975	0.4652	1223.55	1222.4589	1	1237.4	85.0%	7	R.TPLHEIALSIK.L	2
*	step03.14672.14672.2	3.5658	0.4177	1003.652	1004.2076	1	1060.1	94.4%	6	R.LGGIGQFLAK.A	2
*	step02.5716.5716.2	4.2375	0.3699	1743.534	1742.8657	1	1843.1	76.7%	4	R.ELDALDANDELTPLGR.I	2
*	step04.20341.20341.3	4.6747	0.4389	2078.203	2078.2722	1	1615.6	44.1%	5	R.FSDHVALLSVFQAWDDAR.M	3
*	step06.20710.20710.2	6.2323	0.4876	2078.455	2078.2722	1	3047.0	76.5%	9	R.FSDHVALLSVFQAWDDAR.M	2
*	step02.8008.8008.2	4.0355	0.3946	1488.497	1487.6111	1	936.2	75.0%	1	K.SSVNCPFSSQDMK.Y	2
*	step05.18415.18415.3	3.5607	0.3046	2787.433	2787.0889	19	603.6	27.2%	1	K.SSVNCPFSSQDMKYPSPFFVFGEK.I	3
*	step06.24447.24447.2	3.9587	0.2471	1732.441	1733.1516	1	1279.8	73.3%	7	K.GMTLVTPLQLLLFASK.K	2
*	step06.1030.1030.2	4.0182	0.4578	1749.395	1749.151	1	868.7	66.7%	12	K.GM*TLVTPLQLLLFASK.K	2
*	step06.21706.21706.3	3.8824	0.4252	1749.435	1749.151	1	1651.3	50.0%	2	K.GM*TLVTPLQLLLFASK.K	3
*	step05.13747.13747.2	4.2391	0.5029	1640.592	1640.8596	1	2451.3	82.1%	1	K.LQISHEAAACITGLR.A	2

U	gi\|212549553\|ref\|NP_0	20	35	27.4%	898	95808	8.8	interleukin enhancer-binding factor 3 isoform d [Homo sapiens]
U	gi\|24234750\|ref\|NP_03	20	35	27.5%	894	95339	8.8	interleukin enhancer-binding factor 3 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17402.17402.3	3.7699	0.2576	2672.618	2672.8691	1	510.9	30.7%	1	K.HSSVYPTQEELEAVQNMVSHTER.A	3 3
step03.17789.17789.2	3.0287	0.1767	1388.385	1388.6254	1	1301.7	72.7%	2	K.GDLDLELVLLCK.E	2 2
step05.602.602.3	5.0522	0.3053	3331.519	3330.771	1	954.9	29.2%	3	K.VADNLAIQLAAVTEDKYEILQSVDDAAIVIK.N	3 3
step06.18472.18472.2	3.6703	0.4463	1759.576	1760.0706	1	283.8	63.3%	2	K.EPPLSLTIHLTSPVVR.E	2 2
step04.13395.13395.2	2.3818	0.2695	926.354	926.0969	5	563.3	85.7%	1	R.VPTWGPLR.G	2 2
step04.11145.11145.2	3.3532	0.109	1601.579	1601.8135	1	573.5	56.7%	3	K.SIGTANRPMGAGEALR.R	2 2
step06.14929.14929.3	3.6701	0.2779	1756.731	1757.9999	1	795.7	45.3%	1	K.SIGTANRPMGAGEALRR.V	3 3
step06.14889.14889.2	2.2125	0.1591	1757.412	1757.9999	14	144.1	46.9%	1	K.SIGTANRPMGAGEALRR.V	2 2
step02.8258.8258.2	3.3105	0.3724	1369.349	1369.4657	1	920.8	81.8%	2	R.EDITQSAQHALR.L	2 2
step05.11852.11852.1	1.8835	0.174	984.556	985.16437	1	322.5	68.8%	1	R.LAAFGQLHK.V	1 1
step05.11792.11792.2	2.273	0.2115	984.992	985.16437	2	1025.6	87.5%	1	R.LAAFGQLHK.V	2 2
step05.10427.10427.2	3.2695	0.3192	1302.976	1302.5471	1	716.1	75.0%	2	R.LNQLKPGLQYK.L	2 2
step03.16766.16766.3	4.6259	0.3605	3189.679	3190.5295	1	1359.8	26.7%	2	K.LVSQTGPVHAPIFTMSVEVDGNSFEASGPSK.K	3 3
step04.16807.16807.3	5.4277	0.4526	3318.769	3318.7024	1	714.3	29.0%	2	K.LVSQTGPVHAPIFTMSVEVDGNSFEASGPSKK.T	3 3
step02.10536.10536.2	2.4857	0.3156	1443.98	1444.6392	1	821.2	65.4%	1	K.VLQDMGLPTGAEGR.D	2 2
step02.5909.5909.2	3.7483	0.4612	1460.279	1460.6385	1	1002.6	76.9%	2	K.VLQDM*GLPTGAEGR.D	2 2
step05.13435.13435.2	4.1584	0.4804	1890.606	1891.0748	1	1616.7	71.9%	2	R.GLKYELISETGGSHDKR.F	2 2 2
step04.14049.14049.3	3.9765	0.3622	1891.287	1891.0748	1	893.4	43.8%	2	R.GLKYELISETGGSHDKR.F	3 3 3
step02.12573.12573.2	3.0702	0.3196	1021.116	1021.1918	1	1542.7	94.4%	2	K.AYAALAALEK.L	2 2
step03.9238.9238.3	4.3705	0.3956	3013.618	3013.9563	1	876.6	25.8%	2	R.SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK.Q	3

Similarities: gi|212549555|ref|NP_0(19:1)
gi|21361745|ref|NP_06(2:18)

U	gi\|16332360\|ref\|NP_27	16	40	27.4%	526	59273	4.6	cell division protein kinase 11B isoform 3 [Homo sapiens]
U	gi\|16332364\|ref\|NP_27	16	40	19.3%	748	87138	5.4	cell division protein kinase 11B isoform 5 [Homo sapiens]
U	gi\|16332362\|ref\|NP_27	16	40	19.5%	737	85906	5.3	cell division protein kinase 11B isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7649.7649.2	2.685	0.4562	1286.31	1286.415	1	983.6	75.0%	1	R.IEEGTYGVVYR.A	2 2 2
step03.17210.17210.2	4.4655	0.4576	1637.52	1637.9241	1	2058.1	87.5%	10	K.IYIVMNYVEHDLK.S	2 2 2
step03.13942.13942.2	2.8657	0.1437	1851.536	1852.2085	1	458.9	56.7%	2	K.SLMETM*KQPFLPGEVK.T	2 2 2
step04.12865.12865.2	2.7164	0.3207	1867.861	1868.2079	6	200.8	50.0%	2	K.SLMETMKQPFLPGEVK.T	2 2 2
step03.16702.16702.2	3.159	0.2484	988.152	988.27313	1	814.3	92.9%	6	K.TLMIQLLR.G	2 2 2
step05.15352.15352.2	4.1422	0.3979	1367.424	1367.6191	1	1848.2	83.3%	4	K.TSNLLLSHAGILK.V	2 2 2
step02.8492.8492.2	2.6917	0.2872	834.663	834.9427	3	731.2	78.6%	2	K.VGDFGLAR.E	2 2 2
step05.17756.17756.2	2.7833	0.5008	1468.839	1468.7236	1	700.8	72.7%	1	K.AYTPVVVTLWYR.A	2 2
step01.9060.9060.2	4.6482	0.1085	1549.469	1548.7035	1	2440.5	84.8%	1	K.AYT#PVVVTLWYR.A	2 2
step02.11798.11798.2	2.928	0.3945	911.862	912.10846	1	684.6	87.5%	1	R.APELLLGAK.E	2 2 2
step04.14447.14447.2	2.4497	0.302	1488.492	1488.7549	1	231.1	62.5%	1	K.IWPGYSELPAVKK.M	2 2
step05.12984.12984.2	3.0434	0.395	1638.092	1637.8444	1	544.3	62.5%	2	K.KMTFSEHPYNNLR.K	2 2 2
step02.11694.11694.2	3.3106	0.4156	1509.269	1509.6714	1	533.2	68.2%	3	K.MTFSEHPYNNLR.K	2 2 2
step05.12398.12398.2	2.8481	0.3606	1637.64	1637.8444	1	557.1	66.7%	1	K.MTFSEHPYNNLRK.R	2 2 2
step02.16942.16942.2	3.4903	0.1715	1656.562	1656.8843	1	1579.5	75.0%	1	R.FGALLSDQGFDLMNK.F	2 2 2
step02.12212.12212.2	3.9094	0.3739	1565.825	1565.7114	1	1231.7	83.3%	2	R.ISAEDGLKHEYFR.E	2 2 2

Similarities: gi|16332358|ref|NP_27(16:0)
gi|148763345|ref|NP_2(13:3)

gi|118498359|ref|NP_0

27.3%

490

54973

10.1

ribosomal L1 domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11738.11738.2	3.0035	0.4827	1256.619	1256.4702	1	1163.9	85.0%	2	R.KAVDALLTHCK.S	2
*	step03.4624.4624.3	4.2007	0.495	2312.547	2313.4082	1	1318.4	40.8%	2	R.SDSEDICLFTKDEPNSTPEK.T	3
*	step06.17214.17214.2	3.3214	0.2232	1459.402	1459.7565	1	642.0	66.7%	3	K.TVSQIISLQTLKK.E	2
*	step04.19251.19251.2	4.1616	0.4419	1532.237	1532.7213	1	1890.4	83.3%	8	R.LLSSFDFFLTDAR.I	2
*	step06.17734.17734.2	3.3858	0.2858	1024.986	1025.2732	1	796.9	87.5%	2	R.RLLPSLIGR.H	2
*	step06.16444.16444.2	2.5063	0.3431	1312.124	1312.6267	1	653.9	81.8%	2	R.KKVPVSVNLLSK.N	2
*	step03.12974.12974.2	2.9289	0.3579	1056.003	1056.2808	1	508.9	77.8%	2	K.VPVSVNLLSK.N	2
*	step02.12977.12978.2	4.5872	0.4023	1633.434	1633.819	1	1899.5	75.0%	1	R.EINDCIGGTVLNISK.S	2
*	step02.21500.21500.2	4.4401	0.4546	2226.644	2227.461	1	863.5	52.6%	7	K.SAALPIFSSFVSNWDEATKR.S	2
*	step02.5770.5770.2	3.4986	0.4472	2150.501	2149.342	1	939.0	47.5%	1	R.KTASVLSKDDVAPESGDTTVK.K	2

gi|49472822|ref|NP_00

27.2%

320

35611

6.1

eukaryotic translation initiation factor 3 subunit G [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16339.16339.3	5.0523	0.5451	3334.124	3333.8198	1	645.0	25.0%	5	K.GIPLATGDTSPEPELLPGAPLPPPKEVINGNIK.T	3
*	step02.11216.11216.2	2.3909	0.2169	1632.65	1632.7944	1	233.0	50.0%	1	K.ELAEQLGLSTGEKEK.L	2
*	step02.14738.14738.3	5.1316	0.343	3139.544	3138.4727	1	1572.4	33.0%	1	K.ELAEQLGLSTGEKEKLPGELEPVQATQNK.T	3
*	step02.7378.7378.2	4.9282	0.4564	1782.803	1781.9883	1	711.7	70.0%	4	K.EKLPGELEPVQATQNK.T	2
*	step02.18850.18850.2	2.9275	0.2779	1895.767	1896.093	1	172.4	56.7%	1	R.ETDLQELFRPFGSISR.I	2
*	step06.18282.18282.2	3.105	0.2369	1081.746	1082.2386	1	865.6	81.2%	2	K.GFAFISFHR.R	2

gi|5453898|ref|NP_006

27.0%

163

18243

8.8

peptidyl-prolyl cis-trans isomerase NIMA-interacting 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14584.14585.3	5.2895	0.5075	2788.271	2787.9402	1	900.4	33.3%	2	R.VYYFNHITNASQWERPSGNSSSGGK.N	3
*	step05.17054.17054.2	3.2736	0.3919	2030.465	2031.3219	1	1267.2	55.6%	1	R.TGEMSGPVFTDSGIHIILR.T	2

U	gi\|50511939\|ref\|NP_00	2	2	26.8%	164	17248	9.3	exosome complex exonuclease RRP40 isoform 2 [Homo sapiens]
U	gi\|50511943\|ref\|NP_05	2	2	16.0%	275	29572	8.1	exosome complex exonuclease RRP40 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13616.13616.2	3.0043	0.3416	1696.143	1697.0144	1	725.9	73.3%	1	R.YVPVKGDHVIGIVTAK.S	2
	step04.17346.17346.3	5.1228	0.481	2920.286	2919.192	1	1067.5	30.6%	1	K.SGDIFKVDVGGSEPASLSYLSFEGATKR.N	3

gi|20070220|ref|NP_00

26.7%

637

72684

6.3

protein arginine N-methyltransferase 5 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.1922.1922.2	3.1114	0.212	1787.536	1786.9983	1	527.6	59.4%	2	R.DLNCVPEIADTLGAVAK.Q	2
	step02.8387.8387.1	2.1674	0.3994	860.706	860.9784	7	137.6	57.1%	2	R.SDLLLSGR.D	1 1
	step02.11363.11363.2	2.7657	0.3994	1109.359	1109.3005	1	1357.8	88.9%	1	R.VPLVAPEDLR.D	2 2
	step02.16119.16119.3	6.7489	0.5305	3369.18	3369.5916	1	2778.8	39.7%	2	R.VPLVAPEDLRDDIIENAPTTHTEEYSGEEK.T	3 3
	step06.19019.19019.2	2.335	0.1942	1380.902	1380.5602	1	565.7	68.8%	1	K.TWM*WWHNFR.T	2 2
	step04.16355.16355.3	4.2736	0.4215	2004.076	2004.2761	1	1573.0	43.1%	4	R.IAVALEIGADLPSNHVIDR.W	3 3
	step04.16379.16379.2	5.2074	0.389	2004.54	2004.2761	1	2295.0	69.4%	4	R.IAVALEIGADLPSNHVIDR.W	2 2
	step04.16893.16893.2	4.0879	0.521	1390.331	1389.6648	1	1068.7	83.3%	6	K.AAILPTSIFLTNK.K	2 2
	step05.16555.16555.2	3.4944	0.4211	1517.279	1517.8376	1	558.7	65.4%	4	K.AAILPTSIFLTNKK.G	2 2
	step05.12149.12149.2	3.0549	0.3443	876.172	876.0778	1	580.8	92.9%	2	K.KGFPVLSK.M	2 2
	step02.8254.8254.2	3.4372	0.3282	1293.482	1292.4214	1	887.1	83.3%	3	K.YSQYQQAIYK.C	2 2
	step04.10810.10810.2	3.2227	0.3715	927.655	927.08325	1	930.4	87.5%	4	R.GPLVNASLR.A	2 2
	step03.461.461.3	5.7787	0.4852	3291.906	3290.6157	1	1095.3	28.4%	2	K.ADIIVSELLGSFADNELSPECLDGAQHFLK.D	3 3
	step02.13890.13890.2	2.9997	0.2813	2110.089	2110.336	1	272.9	46.9%	1	R.EKDRDPEAQFEMPYVVR.L	2 2
	step02.5896.5896.3	4.863	0.4668	2127.588	2126.3354	1	2007.4	53.1%	1	R.EKDRDPEAQFEM*PYVVR.L	3 3

Similarities: gi|88900507|ref|NP_00(14:1)

U	gi\|58761496\|ref\|NP_00	9	30	26.6%	320	34225	9.0	heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]
U	gi\|58761498\|ref\|NP_00	9	30	26.6%	320	34225	9.0	heterogeneous nuclear ribonucleoprotein A1-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18817.18817.2	5.3198	0.4753	1914.9	1914.1483	1	2173.5	78.1%	7	R.KLFIGGLSFETTDESLR.S	2 2
	step03.17237.17237.2	5.5218	0.524	1786.772	1785.9753	1	2069.8	76.7%	7	K.LFIGGLSFETTDESLR.S	2 2
	step02.15951.15951.2	2.6973	0.2722	1966.973	1967.1882	1	519.6	53.3%	1	R.SHFEQWGTLTDCVVMR.D	2 2
	step05.15862.15862.3	4.2973	0.4566	2679.291	2678.9585	1	763.7	33.3%	2	R.SHFEQWGTLTDCVVMRDPNTKR.S	3 3
	step05.15184.15184.3	4.1958	0.2958	2694.714	2694.9578	1	1034.1	38.1%	4	R.SHFEQWGTLTDCVVM*RDPNTKR.S	3 3
2	step03.14196.14196.2	4.6693	0.4759	1880.608	1881.0815	1	2168.5	76.7%	5	K.IFVGGIKEDTEEHHLR.D	2 2 2
2	step03.13928.13928.3	4.361	0.4603	1881.297	1881.0815	1	1366.3	51.7%	2	K.IFVGGIKEDTEEHHLR.D	3 3 3
	step02.14849.14849.2	2.8533	0.3242	1219.174	1219.4336	1	1637.8	88.9%	1	K.IEVIEIMTDR.G	2 2
	step03.17110.17110.2	4.1922	0.3951	2283.905	2282.5366	1	483.6	44.7%	1	R.GFAFVTFDDHDSVDKIVIQK.Y	2 2

Similarities: gi|14043070|ref|NP_11(9:0)
gi|14043072|ref|NP_11(2:7)

U	gi\|32455264\|ref\|NP_85	4	9	26.6%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]
U	gi\|4505591\|ref\|NP_002	4	9	26.6%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]
U	gi\|32455266\|ref\|NP_85	4	9	26.6%	199	22110	8.1	peroxiredoxin-1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.14136.14136.2	2.2983	0.1245	981.198	981.13257	1	609.3	81.2%	1	K.IGHPAPNFK.A	2
step02.7916.7916.2	2.38	0.2911	1166.111	1165.3445	5	553.9	70.0%	1	K.ATAVMPDGQFK.D	2
step03.12837.12837.2	2.4389	0.1812	1264.12	1264.4558	1	627.3	65.0%	2	K.RTIAQDYGVLK.A	2
step06.14939.14939.3	5.7558	0.4793	2406.864	2407.6606	1	1532.2	36.9%	5	K.HGEVCPAGWKPGSDTIKPDVQK.S	3

gi|14210536|ref|NP_11

26.5%

446

49857

4.9

tubulin beta-6 chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15034.15034.3	4.3522	0.392	2158.413	2157.434	1	1589.6	47.2%	2	-.M*REIVHIQAGQCGNQIGTK.F	3
*	step02.17538.17538.3	7.0437	0.5734	2962.831	2962.1753	1	2792.9	39.4%	2	K.FWEVISDEHGIDPAGGYVGDSALQLER.I	3
	step03.13658.13658.2	4.0603	0.328	1352.186	1352.6483	1	1632.4	90.9%	2	R.IMNTFSVMPSPK.V	2 2
	step03.12015.12015.2	3.4306	0.3651	1368.486	1368.6477	1	1204.7	77.3%	2	R.IM*NTFSVMPSPK.V	2 2
	step03.10072.10072.2	3.4325	0.4015	1384.499	1384.6471	1	1186.1	81.8%	3	R.IMNTFSVMPSPK.V	2 2
*	step06.20135.20135.3	4.2473	0.3892	2636.101	2636.9631	1	1333.8	34.4%	2	K.LTTPTYGDLNHLVSATMSGVTTSLR.F	3
	step02.11320.11320.2	3.0929	0.3358	1130.76	1131.2664	1	905.4	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2
	step05.10818.10818.1	1.8152	0.1126	1258.713	1259.4392	1	313.3	60.0%	1	R.FPGQLNADLRK.L	1 1 1 1 1 1 1 1 1
	step05.11218.11219.2	2.7952	0.2822	1260.2	1259.4392	1	953.1	85.0%	6	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2
	step06.17637.17637.2	3.5322	0.4873	1273.324	1272.5878	1	1276.5	85.0%	5	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2
	step06.16197.16197.2	3.5579	0.4838	1287.965	1288.5872	1	1079.2	90.0%	3	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2
	step04.14925.14926.1	2.8788	0.3227	1144.203	1144.4148	7	272.2	66.7%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1
	step05.14878.14879.2	4.0156	0.4698	1145.278	1144.4148	1	996.5	94.4%	11	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2
	step04.13422.13423.2	3.8664	0.3852	1160.598	1160.4142	1	1041.8	88.9%	7	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2
	step03.16175.16175.2	4.0167	0.3359	1698.123	1697.8715	1	964.3	73.1%	4	K.NSSYFVEWIPNNVK.V	2 2 2 2 2 2
	step02.16251.16251.3	3.6647	0.2443	1698.445	1697.8715	1	754.4	46.2%	1	K.NSSYFVEWIPNNVK.V	3 3 3 3 3 3

gi|15431293|ref|NP_00

26.5%

204

24146

11.6

60S ribosomal protein L15 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13191.13191.2	2.6961	0.1824	1008.234	1008.1548	3	602.5	91.7%	1	K.YIQELWR.K	2
*	step02.13222.13222.1	2.2665	0.1659	1008.708	1008.1548	2	335.4	75.0%	3	K.YIQELWR.K	1
*	step02.12537.12537.2	4.5885	0.5767	1662.315	1661.7927	1	1682.9	84.6%	3	R.VLNSYWVGEDSTYK.F	2
*	step06.20391.20391.2	3.6444	0.3864	1504.765	1505.7839	1	1795.0	86.4%	17	K.FFEVILIDPFHK.A	2
*	step04.19714.19714.3	3.5701	0.2982	1505.855	1505.7839	1	972.1	61.4%	1	K.FFEVILIDPFHK.A	3
*	step06.15539.15539.2	3.3278	0.454	1720.724	1720.9562	1	533.8	65.4%	2	R.RNPDTQWITKPVHK.H	2
*	step06.15550.15550.3	3.5145	0.3207	1721.008	1720.9562	1	1041.7	50.0%	1	R.RNPDTQWITKPVHK.H	3
*	step05.12054.12054.2	3.6786	0.4614	1563.886	1564.7698	1	454.3	66.7%	4	R.NPDTQWITKPVHK.H	2
*	step04.10079.10079.2	2.2423	0.148	881.828	882.00256	1	535.5	83.3%	1	R.NTLQLHR.Y	2

U	gi\|33239445\|ref\|NP_00	20	50	26.2%	814	92482	5.0	eukaryotic translation initiation factor 3 subunit B [Homo sapiens]
U	gi\|83367072\|ref\|NP_00	20	50	26.2%	814	92482	5.0	eukaryotic translation initiation factor 3 subunit B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16867.16867.2	5.126	0.5386	1952.05	1952.1981	1	2648.5	76.5%	11	K.GYIFLEYASPAHAVDAVK.N	2
step03.20548.20548.3	4.3459	0.5487	3208.116	3208.585	3	401.1	27.0%	1	R.VNLFTDFDKYMTISDEWDIPEKQPFK.D	3
step02.16116.16116.2	4.4878	0.4717	2036.286	2036.2303	1	1349.8	68.8%	2	R.TSIFWNDVKDPVSIEER.A	2
step05.11872.11872.2	3.4043	0.3901	1194.388	1194.3241	1	773.0	77.8%	4	K.GTYLATFHQR.G	2
step05.1040.1040.3	4.3354	0.4218	3232.484	3232.6943	1	751.8	28.7%	5	R.YLVTFSPLMDTQDDPQAIIIWDILTGHK.K	3
step04.1607.1607.3	4.662	0.4657	3249.731	3248.6936	3	378.4	24.1%	2	R.YLVTFSPLM*DTQDDPQAIIIWDILTGHK.K	3
step06.18115.18117.2	3.6954	0.4092	1703.613	1703.8744	1	1338.5	76.9%	1	R.GFHCESSAHWPIFK.W	2
step06.18157.18157.3	3.7413	0.3861	1703.655	1703.8744	1	1042.6	48.1%	1	R.GFHCESSAHWPIFK.W	3
step04.20248.20248.3	6.8806	0.499	3217.065	3217.621	1	1791.0	36.6%	4	K.ISGIKDFSWSPGGNIIAFWVPEDKDIPAR.V	3
step04.20153.20153.3	3.5558	0.409	2718.848	2719.0024	3	392.7	29.3%	1	K.DFSWSPGGNIIAFWVPEDKDIPAR.V	3
step03.13246.13246.1	2.1587	0.279	1058.657	1059.3082	8	171.3	56.2%	2	R.VTLMQLPTR.Q	1
step03.13244.13244.2	3.1854	0.3983	1059.148	1059.3082	1	1486.4	93.8%	2	R.VTLMQLPTR.Q	2
step02.9227.9227.2	2.634	0.2596	1076.154	1075.3076	1	562.4	87.5%	3	R.VTLM*QLPTR.Q	2
step02.13173.13173.2	3.071	0.3881	1109.27	1109.2509	1	981.6	87.5%	2	R.NLFNVVDCK.L	2
step02.15417.15417.2	2.5587	0.2786	1467.985	1468.6389	1	1067.8	75.0%	1	K.GTQGVVTNFEIFR.M	2
step03.16199.16199.2	3.7398	0.4396	1563.869	1563.7355	1	950.3	65.4%	1	K.ETIIAFAWEPNGSK.F	2
step04.11485.11485.1	2.0145	0.1549	1096.648	1097.2516	8	471.1	66.7%	1	K.FAVLHGEAPR.I	1
step04.11388.11388.2	2.491	0.3605	1097.217	1097.2516	1	841.5	77.8%	1	K.FAVLHGEAPR.I	2
step06.16438.16438.2	3.0355	0.3855	1081.209	1080.261	1	1069.8	87.5%	3	R.ISVSFYHVK.N	2
step03.15035.15035.2	2.7534	0.3932	1023.105	1023.20605	1	800.1	91.7%	2	R.FCQLLWR.P	2

gi|310129363|ref|XP_0

26.0%

1009

112176

5.2

PREDICTED: DNA damage-binding protein 1-like isoform 5 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16577.16577.2	4.3357	0.4571	1688.564	1688.0043	1	1835.5	78.6%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step06.18702.18702.2	3.1309	0.379	1205.543	1204.5101	1	1419.0	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step05.14327.14327.2	2.581	0.3869	1220.343	1220.5095	2	358.8	77.8%	2	K.IAVM*ELFRPK.G	2 2 2 2
step04.18418.18418.2	2.9426	0.324	1034.122	1034.2736	1	918.1	75.0%	4	K.DLLFILTAK.Y	2 2 2 2
step04.15168.15168.2	2.4547	0.2704	1098.87	1099.3904	1	810.1	72.2%	3	K.YLAIAPPIIK.Q	2 2 2
step05.15053.15053.2	4.2631	0.4173	1771.764	1771.9983	1	1006.4	65.6%	2	R.NGIGIHEHASIDLPGIK.G	2 2 2
step05.15713.15713.2	4.2164	0.4529	1644.573	1644.8981	1	1559.4	83.3%	3	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.14986.14986.2	2.8436	0.3441	1084.213	1084.2927	1	461.7	81.2%	3	K.LPSFELLHK.E	2 2 2 2
step02.12480.12480.2	2.3011	0.1007	1115.299	1115.3286	1	1099.3	88.9%	1	K.EMLGGEIIPR.S	2 2 2 2
step05.11930.11930.2	3.0115	0.3365	1313.884	1313.5715	1	735.6	77.3%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step02.10110.10110.2	2.3819	0.3399	1185.762	1185.3986	2	289.1	60.0%	1	K.VTLGTQPTVLR.T	2 2 2 2
step05.14197.14197.2	3.9746	0.4375	2584.91	2585.8047	1	698.2	47.7%	3	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step06.17016.17016.3	4.0366	0.2186	2585.398	2585.8047	1	768.0	33.0%	2	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step06.17461.17461.2	6.6834	0.5997	2063.079	2062.2993	1	3031.1	84.4%	5	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.11111.11111.3	4.8332	0.5051	2954.218	2954.1514	1	1754.9	34.5%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step03.16433.16433.2	4.4489	0.4827	1884.66	1885.1271	1	1250.7	67.9%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step04.16399.16399.3	4.1967	0.2501	1885.83	1885.1271	1	1145.6	51.8%	2	R.TECNHYNNIMALYLK.T	3 3 3 3
step02.17392.17392.2	3.3167	0.4078	1466.044	1465.7432	1	1600.8	75.0%	1	K.TKGDFILVGDLMR.S	2 2 2 2
step05.17713.17713.2	4.1365	0.5869	2181.957	2181.5403	1	406.3	50.0%	8	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step04.17783.17783.3	6.1375	0.5388	2182.4	2181.5403	1	2552.3	51.4%	3	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3
step03.9.9.3	7.1605	0.583	2651.841	2650.9648	1	1744.4	44.6%	8	R.KTEPATGFIDGDLIESFLDISRPK.M	3 3 3
step03.514.514.2	2.7635	0.1089	2522.087	2522.7917	1	782.5	45.5%	1	K.TEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.22060.22061.2	3.2996	0.2568	1803.063	1803.0042	1	343.4	53.3%	2	R.EATADDLIKVVEELTR.I	2 2 2

Similarities: gi|310129361|ref|XP_0(21:2)
gi|148529014|ref|NP_0(23:0)
gi|310129365|ref|XP_0(20:3)

U	gi\|264681556\|ref\|NP_0	14	41	25.9%	645	70460	6.2	WD repeat-containing protein 26 isoform b [Homo sapiens]
U	gi\|264681558\|ref\|NP_0	14	41	25.3%	661	72124	6.2	WD repeat-containing protein 26 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.18867.18867.3	5.3019	0.5015	2766.947	2768.1365	1	1140.5	33.3%	4	R.LIGQHLNGLGLNQTVDLLMQESGCR.L	3
step05.17255.17255.3	5.6569	0.4649	2783.46	2784.136	1	1556.9	38.5%	3	R.LIGQHLNGLGLNQTVDLLM*QESGCR.L	3
step03.14099.14099.2	2.5609	0.1985	889.781	890.1045	6	677.8	100.0%	2	K.FLLLQQK.Y	2
step02.20123.20123.2	4.4228	0.4853	2151.874	2152.4756	1	3325.1	79.4%	2	K.YLEYLEDGKVLEALQVLR.C	2
step05.15839.15839.3	4.626	0.4967	2002.766	2002.2772	1	1110.9	46.9%	1	R.IHVLSGYLMCSHAEDLR.A	3
step05.14837.14837.2	4.6118	0.4856	2017.786	2018.2766	1	1850.6	81.2%	1	R.IHVLSGYLM*CSHAEDLR.A	2
step05.15487.15487.2	2.4759	0.3762	1612.9	1612.9609	1	694.1	57.7%	1	K.LQTYLPPSVMLPPR.R	2
step02.17132.17132.2	5.2257	0.4462	1996.63	1995.2645	1	1368.3	59.4%	2	K.DTTVIIWQVDPDTHLLK.L	2
step02.17669.17669.2	4.3472	0.5574	2373.312	2373.5134	1	1802.5	57.9%	1	R.GQFYQCDLDGNLLDSWEGVR.V	2
step02.14932.14932.2	3.675	0.5016	1859.905	1860.1241	1	1120.7	66.7%	1	R.NIVQEDHPIMSFTISK.N	2
step03.19448.19448.3	4.6096	0.4031	2163.327	2163.4648	1	1384.3	45.8%	7	R.LALLNVATQGVHLWDLQDR.V	3
step04.19492.19492.2	5.2522	0.5337	2164.168	2163.4648	1	2130.8	66.7%	8	R.LALLNVATQGVHLWDLQDR.V	2
step05.14915.14915.3	5.1389	0.3481	1580.324	1580.7708	1	2562.1	65.4%	4	K.RSELPIAELTGHTR.T	3
step05.14891.14891.2	4.6571	0.322	1581.709	1580.7708	1	1041.7	84.6%	4	K.RSELPIAELTGHTR.T	2

U	gi\|148529014\|ref\|NP_0	25	73	25.4%	1140	126968	5.3	DNA damage-binding protein 1 [Homo sapiens]
U	gi\|310129359\|ref\|XP_0	25	73	25.4%	1140	126968	5.3	PREDICTED: DNA damage-binding protein 1-like isoform 3 [Homo sapiens]
U	gi\|310129356\|ref\|XP_0	25	73	25.4%	1140	126968	5.3	PREDICTED: DNA damage-binding protein 1-like isoform 2 [Homo sapiens]
U	gi\|239750064\|ref\|XP_0	25	73	25.4%	1140	126968	5.3	PREDICTED: DNA damage-binding protein 1-like isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16577.16577.2	4.3357	0.4571	1688.564	1688.0043	1	1835.5	78.6%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step06.18702.18702.2	3.1309	0.379	1205.543	1204.5101	1	1419.0	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step05.14327.14327.2	2.581	0.3869	1220.343	1220.5095	2	358.8	77.8%	2	K.IAVM*ELFRPK.G	2 2 2 2
step04.18418.18418.2	2.9426	0.324	1034.122	1034.2736	1	918.1	75.0%	4	K.DLLFILTAK.Y	2 2 2 2
step02.16480.16480.2	2.3074	0.2398	1983.998	1984.2367	1	424.6	61.8%	2	R.IGRPSETGIIGIIDPECR.M	2 2
step02.12760.12760.2	3.5466	0.4618	1195.807	1195.3903	1	1211.0	88.9%	2	R.LEELHVIDVK.F	2 2
step04.15168.15168.2	2.4547	0.2704	1098.87	1099.3904	1	810.1	72.2%	3	K.YLAIAPPIIK.Q	2 2 2
step05.15053.15053.2	4.2631	0.4173	1771.764	1771.9983	1	1006.4	65.6%	2	R.NGIGIHEHASIDLPGIK.G	2 2 2
step05.15713.15713.2	4.2164	0.4529	1644.573	1644.8981	1	1559.4	83.3%	3	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.14986.14986.2	2.8436	0.3441	1084.213	1084.2927	1	461.7	81.2%	3	K.LPSFELLHK.E	2 2 2 2
step02.12480.12480.2	2.3011	0.1007	1115.299	1115.3286	1	1099.3	88.9%	1	K.EMLGGEIIPR.S	2 2 2 2
step05.11930.11930.2	3.0115	0.3365	1313.884	1313.5715	1	735.6	77.3%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step02.10110.10110.2	2.3819	0.3399	1185.762	1185.3986	2	289.1	60.0%	1	K.VTLGTQPTVLR.T	2 2 2 2
step05.14197.14197.2	3.9746	0.4375	2584.91	2585.8047	1	698.2	47.7%	3	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step06.17016.17016.3	4.0366	0.2186	2585.398	2585.8047	1	768.0	33.0%	2	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step06.17461.17461.2	6.6834	0.5997	2063.079	2062.2993	1	3031.1	84.4%	5	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.11111.11111.3	4.8332	0.5051	2954.218	2954.1514	1	1754.9	34.5%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step03.16433.16433.2	4.4489	0.4827	1884.66	1885.1271	1	1250.7	67.9%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step04.16399.16399.3	4.1967	0.2501	1885.83	1885.1271	1	1145.6	51.8%	2	R.TECNHYNNIMALYLK.T	3 3 3 3
step02.17392.17392.2	3.3167	0.4078	1466.044	1465.7432	1	1600.8	75.0%	1	K.TKGDFILVGDLMR.S	2 2 2 2
step05.17713.17713.2	4.1365	0.5869	2181.957	2181.5403	1	406.3	50.0%	8	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step04.17783.17783.3	6.1375	0.5388	2182.4	2181.5403	1	2552.3	51.4%	3	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3
step03.9.9.3	7.1605	0.583	2651.841	2650.9648	1	1744.4	44.6%	8	R.KTEPATGFIDGDLIESFLDISRPK.M	3 3 3
step03.514.514.2	2.7635	0.1089	2522.087	2522.7917	1	782.5	45.5%	1	K.TEPATGFIDGDLIESFLDISRPK.M	2 2 2
step02.22060.22061.2	3.2996	0.2568	1803.063	1803.0042	1	343.4	53.3%	2	R.EATADDLIKVVEELTR.I	2 2 2

Similarities: gi|310129361|ref|XP_0(21:4)
gi|310129363|ref|XP_0(23:2)
gi|310129365|ref|XP_0(22:3)

U	gi\|32483377\|ref\|NP_05	5	7	25.2%	238	25839	7.5	thioredoxin-dependent peroxide reductase, mitochondrial isoform b [Homo sapiens]
U	gi\|5802974\|ref\|NP_006	5	7	23.4%	256	27693	7.8	thioredoxin-dependent peroxide reductase, mitochondrial isoform a precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16075.16075.2	2.3236	0.115	1882.163	1883.2056	1	323.7	44.1%	1	R.KNGGLGHMNIALLSDLTK.Q	2
step06.18275.18275.2	2.7271	0.3296	1898.44	1899.205	2	172.4	47.1%	1	R.KNGGLGHM*NIALLSDLTK.Q	2
step05.17857.17857.2	4.46	0.3954	1755.119	1755.0326	1	1594.9	68.8%	1	K.NGGLGHMNIALLSDLTK.Q	2
step03.12752.12752.2	3.0968	0.2944	1206.839	1207.3644	1	1115.1	90.0%	2	K.HLSVNDLPVGR.S	2
step04.14603.14603.3	6.1821	0.5595	3386.379	3387.6934	1	2411.4	34.2%	2	K.AFQYVETHGEVCPANWTPDSPTIKPSPAASK.E	3

gi|15208660|ref|NP_00

24.8%

475

54170

6.4

E3 ubiquitin-protein ligase TRIM21 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5765.5765.2	4.1003	0.5276	1988.667	1989.1523	1	1475.3	84.4%	1	R.DHAMVPLEEAAQEYQEK.L	2
*	step02.5277.5277.2	3.7985	0.4018	2004.863	2005.1517	1	1701.3	78.1%	2	R.DHAM*VPLEEAAQEYQEK.L	2
*	step02.12672.12672.2	2.7531	0.2419	999.309	999.18933	1	887.0	87.5%	1	K.LQVALGELR.R	2
*	step04.13566.13566.2	2.4405	0.1515	1155.137	1155.3757	4	695.7	77.8%	2	K.LQVALGELRR.K	2
*	step02.19562.19562.2	5.246	0.4984	1943.071	1943.148	1	1711.4	71.9%	1	K.LAQQSQALQELISELDR.R	2
*	step05.10177.10177.2	2.9844	0.3687	997.317	997.16693	1	736.2	87.5%	2	R.SVCHVPGLK.K	2
*	step04.19078.19078.3	5.5701	0.3969	2638.572	2638.9075	1	1528.5	36.4%	2	R.TCAVHITLDPDTANPWLILSEDR.R	3
*	step05.18647.18647.3	4.6636	0.4282	2795.04	2795.0938	1	746.4	31.5%	8	R.TCAVHITLDPDTANPWLILSEDRR.Q	3
*	step05.15917.15917.3	5.9996	0.5575	3448.786	3447.7388	1	603.7	27.5%	4	R.LGDTQQSIPGNEERFDSYPMVLGAQHFHSGK.H	3
*	step05.13876.13876.2	3.5107	0.5596	1937.772	1938.155	1	505.1	56.2%	2	R.FDSYPM*VLGAQHFHSGK.H	2
*	step02.12129.12129.2	2.6143	0.4333	1234.384	1234.3419	1	854.7	77.8%	2	K.HYWEVDVTGK.E	2

gi|170763500|ref|NP_0

193

24.8%

290

33489

4.3

protein SET isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5565.5565.3	5.4889	0.495	2638.418	2638.7861	1	1617.3	40.5%	1	K.KGEKEQQEAIEHIDEVQNEIDR.L	3
	step03.4538.4538.3	5.2091	0.478	2195.898	2196.2742	1	1235.1	39.7%	4	K.EQQEAIEHIDEVQNEIDR.L	3 3
	step03.4542.4542.2	5.612	0.536	2197.488	2196.2742	1	930.2	70.6%	5	K.EQQEAIEHIDEVQNEIDR.L	2 2
	step02.19340.19340.3	5.5921	0.5551	3451.355	3451.6543	1	913.6	26.8%	9	K.EQQEAIEHIDEVQNEIDRLNEQASEEILK.V	3 3
	step02.4916.4916.2	3.915	0.24	1274.344	1274.4026	1	1583.0	85.0%	20	R.LNEQASEEILK.V	2 2
	step02.5649.5649.3	4.2445	0.4051	1759.263	1758.9514	1	843.7	51.8%	2	R.LNEQASEEILKVEQK.Y	3 3
	step02.5636.5636.2	5.0288	0.4185	1759.732	1758.9514	1	2591.9	85.7%	10	R.LNEQASEEILKVEQK.Y	2 2
	step03.6974.6974.2	2.3049	0.086	817.207	816.96875	3	833.0	100.0%	1	K.RSELIAK.I	2 2
	step01.12356.12356.2	3.8018	0.4112	1210.167	1209.3274	1	1064.6	88.9%	60	R.VEVTEFEDIK.S	2 2 2
	step05.17387.17387.2	4.9501	0.4251	2305.394	2305.4424	1	1463.6	64.7%	13	K.SGYRIDFYFDENPYFENK.V	2 2
	step04.17447.17447.3	5.5931	0.3412	2305.858	2305.4424	1	1926.7	47.1%	10	K.SGYRIDFYFDENPYFENK.V	3 3
	step02.1364.1364.3	4.7385	0.3584	1842.202	1841.9528	1	2815.0	61.5%	15	R.IDFYFDENPYFENK.V	3 3
	step02.2018.2019.2	5.8746	0.4503	1842.448	1841.9528	1	2514.2	84.6%	43	R.IDFYFDENPYFENK.V	2 2

Similarities: gi|170763498|ref|NP_0(12:1)
gi|310114661|ref|XP_0(1:12)

gi|13027604|ref|NP_07

24.8%

218

25650

10.0

28S ribosomal protein S34, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14306.14306.2	2.3846	0.2186	812.588	813.02325	2	764.4	91.7%	2	R.LLQLLGR.L	2
*	step03.14302.14302.1	1.8229	0.1377	812.604	813.02325	2	213.5	66.7%	1	R.LLQLLGR.L	1
*	step05.15726.15726.2	2.3383	0.377	872.603	873.07715	1	799.9	92.9%	2	R.LPLFGLGR.L	2
*	step05.15746.15746.1	2.0991	0.2213	873.638	873.07715	8	132.7	57.1%	3	R.LPLFGLGR.L	1
*	step03.16756.16756.2	2.8754	0.1805	936.123	936.1317	1	478.1	85.7%	2	K.AWGILTFK.G	2
*	step04.18904.18904.3	3.9206	0.3437	3423.581	3423.8584	1	900.2	26.7%	1	R.LVPKHEEEAFTAFTPAPEDSLASVPYPPLLR.A	3

gi|88900507|ref|NP_00

24.7%

620

71320

6.5

protein arginine N-methyltransferase 5 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8387.8387.1	2.1674	0.3994	860.706	860.9784	7	137.6	57.1%	2	R.SDLLLSGR.D	1 1
step02.11363.11363.2	2.7657	0.3994	1109.359	1109.3005	1	1357.8	88.9%	1	R.VPLVAPEDLR.D	2 2
step02.16119.16119.3	6.7489	0.5305	3369.18	3369.5916	1	2778.8	39.7%	2	R.VPLVAPEDLRDDIIENAPTTHTEEYSGEEK.T	3 3
step06.19019.19019.2	2.335	0.1942	1380.902	1380.5602	1	565.7	68.8%	1	K.TWM*WWHNFR.T	2 2
step04.16355.16355.3	4.2736	0.4215	2004.076	2004.2761	1	1573.0	43.1%	4	R.IAVALEIGADLPSNHVIDR.W	3 3
step04.16379.16379.2	5.2074	0.389	2004.54	2004.2761	1	2295.0	69.4%	4	R.IAVALEIGADLPSNHVIDR.W	2 2
step04.16893.16893.2	4.0879	0.521	1390.331	1389.6648	1	1068.7	83.3%	6	K.AAILPTSIFLTNK.K	2 2
step05.16555.16555.2	3.4944	0.4211	1517.279	1517.8376	1	558.7	65.4%	4	K.AAILPTSIFLTNKK.G	2 2
step05.12149.12149.2	3.0549	0.3443	876.172	876.0778	1	580.8	92.9%	2	K.KGFPVLSK.M	2 2
step02.8254.8254.2	3.4372	0.3282	1293.482	1292.4214	1	887.1	83.3%	3	K.YSQYQQAIYK.C	2 2
step04.10810.10810.2	3.2227	0.3715	927.655	927.08325	1	930.4	87.5%	4	R.GPLVNASLR.A	2 2
step03.461.461.3	5.7787	0.4852	3291.906	3290.6157	1	1095.3	28.4%	2	K.ADIIVSELLGSFADNELSPECLDGAQHFLK.D	3 3
step02.13890.13890.2	2.9997	0.2813	2110.089	2110.336	1	272.9	46.9%	1	R.EKDRDPEAQFEMPYVVR.L	2 2
step02.5896.5896.3	4.863	0.4668	2127.588	2126.3354	1	2007.4	53.1%	1	R.EKDRDPEAQFEM*PYVVR.L	3 3

Similarities: gi|20070220|ref|NP_00(14:0)

gi|50592996|ref|NP_00

100

24.7%

450

50433

4.9

tubulin beta-3 chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.15502.15502.3	6.1734	0.4756	2111.238	2111.4084	1	3861.7	52.8%	3	-.MREIVHIQAGQCGNQIGAK.F	3 3 3 3 3
2	step06.15523.15523.2	5.7875	0.4231	2111.856	2111.4084	1	1884.2	75.0%	4	-.MREIVHIQAGQCGNQIGAK.F	2 2 2 2 2
2	step06.15000.15000.2	4.3236	0.483	2126.961	2127.408	1	761.4	72.2%	2	-.M*REIVHIQAGQCGNQIGAK.F	2 2 2 2 2
2	step06.15225.15225.3	6.1085	0.3977	2127.799	2127.408	1	2248.6	51.4%	3	-.M*REIVHIQAGQCGNQIGAK.F	3 3 3 3 3
2	step03.10880.10880.3	4.9732	0.4662	1825.131	1824.025	1	3013.3	56.2%	5	R.EIVHIQAGQCGNQIGAK.F	3 3 3 3 3
2	step05.10084.10084.2	4.4903	0.4525	1825.205	1824.025	1	864.7	75.0%	5	R.EIVHIQAGQCGNQIGAK.F	2 2 2 2 2
	step02.19726.19726.2	6.2464	0.5547	1960.128	1960.1339	1	4514.6	88.2%	2	K.GHYTEGAELVDSVLDVVR.K	2 2 2 2
	step03.19269.19269.3	4.5862	0.3127	1961.133	1960.1339	1	1461.8	45.6%	4	K.GHYTEGAELVDSVLDVVR.K	3 3 3 3
	step02.19574.19574.3	4.8821	0.4031	2088.433	2088.307	1	1188.5	48.6%	2	K.GHYTEGAELVDSVLDVVRK.E	3 3 3 3
	step04.19188.19188.2	5.6305	0.5135	2088.886	2088.307	1	2728.8	75.0%	5	K.GHYTEGAELVDSVLDVVRK.E	2 2 2 2
	step02.12568.12568.2	3.7863	0.1073	1321.961	1320.5828	1	1441.3	81.8%	5	R.IMNTFSVVPSPK.V	2 2 2 2
	step03.11522.11522.2	4.0348	0.4734	1336.372	1336.5822	1	1910.8	90.9%	3	R.IM*NTFSVVPSPK.V	2 2 2 2
	step02.11320.11320.2	3.0929	0.3358	1130.76	1131.2664	1	905.4	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2
	step05.10818.10818.1	1.8152	0.1126	1258.713	1259.4392	1	313.3	60.0%	1	R.FPGQLNADLRK.L	1 1 1 1 1 1 1 1 1
	step05.11218.11219.2	2.7952	0.2822	1260.2	1259.4392	1	953.1	85.0%	6	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2
	step06.17637.17637.2	3.5322	0.4873	1273.324	1272.5878	1	1276.5	85.0%	5	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2
	step06.16197.16197.2	3.5579	0.4838	1287.965	1288.5872	1	1079.2	90.0%	3	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2
	step04.14925.14926.1	2.8788	0.3227	1144.203	1144.4148	7	272.2	66.7%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1
	step05.14878.14879.2	4.0156	0.4698	1145.278	1144.4148	1	996.5	94.4%	11	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2
	step04.13422.13423.2	3.8664	0.3852	1160.598	1160.4142	1	1041.8	88.9%	7	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2
	step02.17220.17220.2	3.3659	0.3357	1693.491	1692.9581	1	933.7	78.6%	2	R.ALTVPELTQQMFDAK.N	2 2 2
	step03.16175.16175.2	4.0167	0.3359	1698.123	1697.8715	1	964.3	73.1%	4	K.NSSYFVEWIPNNVK.V	2 2 2 2 2 2
	step02.16251.16251.3	3.6647	0.2443	1698.445	1697.8715	1	754.4	46.2%	1	K.NSSYFVEWIPNNVK.V	3 3 3 3 3 3
	step05.15654.15654.2	3.3706	0.3907	1387.505	1386.6045	1	480.7	75.0%	2	K.RISEQFTAMFR.R	2 2 2 2 2
	step03.15077.15077.2	3.7776	0.329	1230.663	1230.4182	1	1496.8	94.4%	7	R.ISEQFTAMFR.R	2 2 2 2 2
	step02.11939.11939.2	3.1787	0.431	1246.339	1246.4176	1	1420.1	88.9%	2	R.ISEQFTAM*FR.R	2 2 2 2 2

U	gi\|116256473\|ref\|NP_7	13	32	24.6%	629	72934	8.5	protein SCAI isoform 1 [Homo sapiens]
U	gi\|221554543\|ref\|NP_0	13	32	25.6%	606	70399	8.6	protein SCAI isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.21849.21849.2	2.2055	0.1844	1878.62	1878.9253	67	205.8	26.9%	1	R.KTVTDFCY#LLDKS#K.Q	2
step06.17603.17603.2	3.2074	0.4116	1489.517	1489.7014	1	1089.7	75.0%	2	K.IGQLYYHYYLR.T	2
step04.19141.19141.2	3.2474	0.3282	2087.382	2087.231	1	824.6	50.0%	2	R.TSETSYLNEAFSFYSAIR.Q	2
step06.19843.19843.2	3.3109	0.2704	1219.351	1219.5347	1	1426.4	88.9%	1	R.FIVVCLLLNK.M	2
step02.5776.5776.2	2.2321	0.2017	1507.477	1507.5408	1	413.2	68.2%	1	K.ELSDEIEDYTHR.F	2
step05.15304.15304.2	3.1849	0.3372	1874.638	1874.106	1	511.7	60.7%	2	K.EMHCLHPGDLYPFTR.K	2
step05.15719.15719.2	3.654	0.4177	1781.142	1782.073	1	518.3	66.7%	2	R.KPLFIIVDSSNSVAYK.N	2
step05.20828.20828.3	5.0574	0.4716	2382.705	2381.7478	1	1307.8	38.8%	1	K.NFTNLFGQPLVCLLSPTAYPK.A	3
step06.20964.20964.2	5.8005	0.5694	2382.72	2381.7478	1	1605.3	67.5%	7	K.NFTNLFGQPLVCLLSPTAYPK.A	2
step03.14723.14723.2	3.2869	0.3734	1154.195	1154.3014	1	1375.3	88.9%	2	R.DIAQLLTHSR.S	2
step03.1366.1366.2	4.9524	0.5172	1933.74	1934.1398	1	2336.6	76.7%	2	R.SIDQAFLQFFGDEFLR.L	2
step03.1274.1274.3	5.6441	0.3967	1933.99	1934.1398	1	2779.4	56.7%	1	R.SIDQAFLQFFGDEFLR.L	3
step04.18852.18852.2	5.0982	0.5621	1380.161	1379.63	1	1655.0	90.9%	8	K.HILELASILDVR.N	2

U	gi\|14043072\|ref\|NP_11	7	15	24.6%	353	37430	8.9	heterogeneous nuclear ribonucleoproteins A2/B1 isoform B1 [Homo sapiens]
U	gi\|4504447\|ref\|NP_002	7	15	25.5%	341	36006	8.6	heterogeneous nuclear ribonucleoproteins A2/B1 isoform A2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.17644.17644.2	3.1479	0.4007	1800.689	1800.0021	1	861.6	56.7%	1	K.LFIGGLSFETTEESLR.N	2
2	step03.14196.14196.2	4.6693	0.4759	1880.608	1881.0815	1	2168.5	76.7%	5	K.LFVGGIKEDTEEHHLR.D	2 2 2
2	step03.13928.13928.3	4.361	0.4603	1881.297	1881.0815	1	1366.3	51.7%	2	K.LFVGGIKEDTEEHHLR.D	3 3 3
	step02.15293.15293.2	2.8682	0.2651	1696.168	1696.7972	1	948.0	60.7%	1	R.GFGFVTFDDHDPVDK.I	2
	step04.10023.10023.2	2.6485	0.4321	1377.95	1378.4344	1	631.8	57.1%	2	R.GGGGNFGPGPGSNFR.G	2
	step03.8038.8038.3	3.8502	0.5224	2206.576	2207.2424	1	1542.6	37.5%	2	R.NM*GGPYGGGNYGPGGSGGSGGYGGR.S	3
	step03.8070.8070.2	3.1301	0.447	2206.586	2207.2424	1	409.2	37.5%	2	R.NM*GGPYGGGNYGPGGSGGSGGYGGR.S	2

Similarities: gi|14043070|ref|NP_11(2:5)
gi|58761496|ref|NP_00(2:5)

gi|4503509|ref|NP_003

24.5%

1382

166569

6.8

eukaryotic translation initiation factor 3 subunit A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17585.17585.2	4.1395	0.5463	1520.454	1520.8187	1	1037.4	83.3%	1	K.KQPALDVLYDVMK.S	2
*	step06.17453.17453.2	2.3377	0.2461	1310.128	1309.5299	1	1204.8	83.3%	1	K.YLELCVDLRK.S	2
*	step03.16695.16695.2	2.3889	0.1082	969.722	970.2328	3	366.1	78.6%	1	R.LLLTPWVK.F	2
*	step02.11684.11684.2	3.1509	0.4674	1334.786	1334.5046	1	1301.2	85.0%	2	R.LYHDIAQQAFK.F	2
*	step05.9973.9973.2	2.6796	0.2551	1013.411	1013.19965	1	889.1	92.9%	2	R.MHLSQIQR.H	2
*	step05.13121.13121.3	7.2236	0.4713	2659.608	2659.837	1	2772.1	55.7%	2	R.HHNQSTAINLNNPESQSMHLETR.L	3
*	step02.15173.15173.2	3.7161	0.4714	1417.721	1416.6039	1	1563.1	83.3%	2	K.AVEDIHGLFSLSK.K	2
*	step06.15815.15815.2	3.1857	0.4552	1411.399	1411.5507	1	1501.2	79.2%	1	K.SGNALFHASTLHR.L	2
*	step04.16987.16987.2	3.5355	0.4647	1524.432	1523.8422	1	809.7	73.1%	6	R.VLLATLSIPITPER.T	2
*	step06.18957.18957.2	3.5333	0.2395	2081.013	2080.4573	5	321.2	38.9%	1	R.VLLATLSIPITPERTDIAR.L	2
*	step02.14553.14553.2	3.647	0.4314	1247.648	1246.499	1	825.2	80.0%	1	R.LLDMDGIIVEK.Q	2
*	step02.5918.5918.2	3.6864	0.3782	1262.396	1262.4984	1	1400.3	90.0%	2	R.LLDM*DGIIVEK.Q	2
*	step05.14920.14920.2	2.8064	0.2453	1351.904	1351.6198	2	540.0	66.7%	3	R.LATLLGLQAPPTR.I	2
*	step02.18220.18220.2	3.9926	0.3772	1436.575	1435.692	1	1771.9	90.9%	2	R.FNVLQYVVPEVK.D	2
*	step05.104.104.2	3.8795	0.3537	1780.43	1781.0004	1	1674.8	69.2%	3	K.DLYNWLEVEFNPLK.L	2
*	step02.15561.15561.3	5.2859	0.4474	2795.815	2796.0852	1	1519.7	43.2%	2	R.EQPEKEPELQQYVPQLQNNTILR.L	3
*	step03.17597.17597.2	4.0339	0.5231	1939.857	1940.189	1	2169.7	73.3%	3	R.LLQQVSQIYQSIEFSR.L	2
*	step02.20152.20152.2	2.4664	0.2253	1735.459	1736.0043	1	391.4	57.1%	1	R.LTSLVPFVDAFQLER.A	2
*	step02.20199.20199.3	3.8056	0.297	1736.059	1736.0043	1	2636.6	64.3%	1	R.LTSLVPFVDAFQLER.A	3
*	step02.13058.13058.2	2.8313	0.4906	1445.182	1445.559	1	784.9	62.5%	1	R.TLSFGSDLNYATR.E	2
*	step02.9032.9032.2	2.296	0.2736	1279.055	1279.489	40	236.7	50.0%	1	R.NQLTAM*SSVLAK.A	2
*	step05.14368.14368.2	3.0745	0.3198	1588.845	1589.9039	1	472.4	53.8%	1	K.ALEVIKPAHILQEK.E	2
*	step02.7911.7911.2	2.8344	0.233	973.142	973.10876	2	670.1	92.9%	2	R.LESLNIQR.E	2
*	step02.19026.19026.2	3.1228	0.4274	2484.765	2484.7605	1	738.1	52.5%	1	K.AFKDIDIEDLEELDPDFIM*AK.Q	2
*	step02.19040.19040.3	5.1876	0.4416	2485.681	2484.7605	1	1162.4	37.5%	1	K.AFKDIDIEDLEELDPDFIM*AK.Q	3
*	step01.12383.12383.2	3.2613	0.3636	2122.169	2122.3354	1	854.9	55.9%	1	K.DIDIEDLEELDPDFIMAK.Q	2
*	step02.13666.13666.2	2.569	0.262	1111.156	1111.3596	1	779.1	81.2%	1	K.RLEEIPLIK.S	2
*	step02.5246.5246.2	5.6497	0.5593	1850.377	1849.9998	1	2312.0	84.6%	2	R.IKDMDLWEQQEEER.I	2
*	step02.8186.8186.2	2.4789	0.3226	991.664	992.1755	1	629.7	92.9%	1	R.ITTMQLER.E	2
*	step03.7392.7392.2	2.3076	0.1414	991.141	991.08417	7	421.9	68.8%	1	R.RLGDSSLSR.K	2
*	step06.14339.14339.2	2.993	0.2442	994.215	993.18805	2	786.8	81.2%	6	R.RVPPPALSR.D	2

gi|170763498|ref|NP_0

192

24.5%

277

32103

4.2

protein SET isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.4538.4538.3	5.2091	0.478	2195.898	2196.2742	1	1235.1	39.7%	4	K.EQQEAIEHIDEVQNEIDR.L	3 3
step03.4542.4542.2	5.612	0.536	2197.488	2196.2742	1	930.2	70.6%	5	K.EQQEAIEHIDEVQNEIDR.L	2 2
step02.19340.19340.3	5.5921	0.5551	3451.355	3451.6543	1	913.6	26.8%	9	K.EQQEAIEHIDEVQNEIDRLNEQASEEILK.V	3 3
step02.4916.4916.2	3.915	0.24	1274.344	1274.4026	1	1583.0	85.0%	20	R.LNEQASEEILK.V	2 2
step02.5649.5649.3	4.2445	0.4051	1759.263	1758.9514	1	843.7	51.8%	2	R.LNEQASEEILKVEQK.Y	3 3
step02.5636.5636.2	5.0288	0.4185	1759.732	1758.9514	1	2591.9	85.7%	10	R.LNEQASEEILKVEQK.Y	2 2
step03.6974.6974.2	2.3049	0.086	817.207	816.96875	3	833.0	100.0%	1	K.RSELIAK.I	2 2
step01.12356.12356.2	3.8018	0.4112	1210.167	1209.3274	1	1064.6	88.9%	60	R.VEVTEFEDIK.S	2 2 2
step05.17387.17387.2	4.9501	0.4251	2305.394	2305.4424	1	1463.6	64.7%	13	K.SGYRIDFYFDENPYFENK.V	2 2
step04.17447.17447.3	5.5931	0.3412	2305.858	2305.4424	1	1926.7	47.1%	10	K.SGYRIDFYFDENPYFENK.V	3 3
step02.1364.1364.3	4.7385	0.3584	1842.202	1841.9528	1	2815.0	61.5%	15	R.IDFYFDENPYFENK.V	3 3
step02.2018.2019.2	5.8746	0.4503	1842.448	1841.9528	1	2514.2	84.6%	43	R.IDFYFDENPYFENK.V	2 2

Similarities: gi|170763500|ref|NP_0(12:0)
gi|310114661|ref|XP_0(1:11)

U	gi\|11415030\|ref\|NP_06	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|77539758\|ref\|NP_00	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504323\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504321\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504315\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504313\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504311\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504309\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504305\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504303\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]
U	gi\|4504301\|ref\|NP_003	2	5	24.3%	103	11367	11.4	histone H4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10511.10511.2	3.2215	0.209	1325.917	1326.5271	2	1048.3	72.7%	3	R.DNIQGITKPAIR.R	2
	step05.16523.16523.2	3.3894	0.3709	1467.758	1467.759	1	1052.1	75.0%	2	K.TVTAMDVVYALKR.Q	2

gi|56549656|ref|NP_00

24.2%

343

37048

5.1

hypothetical protein LOC147339 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.4071.4071.3	4.2538	0.2189	2421.873	2422.4995	1	1210.9	40.5%	2	K.ASEQETAKEEDGSVELESQVQK.D	3 3
	step02.1014.1014.2	3.5024	0.4682	2196.054	2195.5376	1	680.0	42.1%	2	K.DGVADSTVISSMPCLLMELR.R	2 2
*	step02.15402.15402.2	3.1341	0.3127	1982.659	1983.2106	1	474.2	50.0%	1	K.TITAEIPGHLDPGFLASDK.T	2
	step02.12309.12309.2	2.6033	0.3663	1148.245	1148.2937	1	850.8	70.0%	1	R.GGVIQSVSSWK.H	2 2
	step03.7638.7638.2	2.5277	0.4727	1193.41	1193.2513	1	401.1	65.0%	1	K.HGSGTQYVSTR.Q	2 2

Similarities: gi|21450814|ref|NP_65(4:1)

gi|14141193|ref|NP_00

24.2%

194

22591

10.7

40S ribosomal protein S9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11157.11157.1	2.0078	0.1593	920.69	921.07544	1	258.0	71.4%	1	K.LIGEYGLR.N	1
*	step02.11150.11150.2	2.6641	0.3148	921.166	921.07544	1	480.3	92.9%	2	K.LIGEYGLR.N	2
*	step05.14672.14672.2	3.5364	0.3096	1189.463	1189.3922	1	1290.4	88.9%	4	R.RLFEGNALLR.R	2
*	step02.13204.13204.2	2.8278	0.2624	1032.796	1033.2058	1	782.5	93.8%	2	R.LFEGNALLR.R	2
*	step06.18657.18657.2	3.0349	0.3219	1194.288	1194.5121	1	1275.4	88.9%	4	K.MKLDYILGLK.I	2
*	step04.15324.15324.2	3.1024	0.3648	1211.368	1210.5115	1	1322.0	88.9%	4	K.M*KLDYILGLK.I	2
*	step06.18045.18045.2	3.9297	0.2098	1401.696	1400.694	1	1084.3	81.8%	5	R.KQVVNIPSFIVR.L	2
*	step04.13405.13405.2	2.6298	0.1542	888.299	888.00555	1	691.4	100.0%	5	K.HIDFSLR.S	2

U	gi\|13994257\|ref\|NP_11	2	3	24.1%	87	10742	10.2	28S ribosomal protein S21, mitochondrial [Homo sapiens]
U	gi\|16950593\|ref\|NP_06	2	3	24.1%	87	10742	10.2	28S ribosomal protein S21, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.6000.6000.2	2.3845	0.2074	1584.657	1583.7485	17	209.9	50.0%	1	R.TVMVQEGNVESAYR.T	2
	step06.17166.17166.2	2.4274	0.2488	922.216	922.1732	1	665.0	100.0%	2	R.KINFLMR.K	2

gi|238624257|ref|NP_0

24.0%

438

48598

9.0

insulin-like growth factor 2 mRNA-binding protein 1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14136.14136.2	4.2658	0.3191	1876.487	1877.0848	1	2281.5	78.1%	1	K.LYIGNLNESVTPADLEK.V	2 2
step02.17028.17028.2	2.956	0.2529	1863.718	1864.0892	1	1208.7	63.3%	2	K.ITISSLQDLTLYNPER.T	2 2
step02.13334.13334.2	3.4736	0.4403	1431.261	1431.7251	1	936.0	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
step02.12314.12314.2	2.6874	0.1775	1209.219	1209.3755	1	836.3	83.3%	2	K.LKEENFFGPK.E	2 2
step02.12560.12560.2	4.621	0.3204	1695.204	1694.909	1	1455.1	84.6%	2	K.LKEENFFGPKEEVK.L	2 2
step05.15858.15858.3	6.2749	0.4658	2444.588	2444.7708	1	1666.0	48.7%	3	K.LKEENFFGPKEEVKLETHIR.V	3 3
step02.15024.15024.2	3.8884	0.4065	1854.723	1854.0975	1	982.1	59.4%	2	K.TVNELQNLTAAEVVVPR.D	2 2
step06.15942.15942.2	2.8039	0.1106	1522.518	1522.7565	1	533.4	66.7%	2	K.IIGHFYASQMAQR.K	2 2
step05.11600.11600.2	3.2405	0.2492	1538.12	1538.7559	1	1061.1	79.2%	3	K.IIGHFYASQM*AQR.K	2 2
step04.13509.13510.2	3.0798	0.232	1057.328	1056.284	1	788.5	81.2%	3	K.IRDILAQVK.Q	2 2

Similarities: gi|56237027|ref|NP_00(10:0)
gi|30795212|ref|NP_00(1:9)
gi|56118219|ref|NP_00(1:9)

U	gi\|205830451\|ref\|NP_0	3	5	24.0%	271	30037	5.5	catechol O-methyltransferase isoform MB-COMT [Homo sapiens]
U	gi\|6466450\|ref\|NP_009	3	5	29.4%	221	24449	5.3	catechol O-methyltransferase isoform S-COMT [Homo sapiens]
U	gi\|4502969\|ref\|NP_000	3	5	24.0%	271	30037	5.5	catechol O-methyltransferase isoform MB-COMT [Homo sapiens]
U	gi\|205830453\|ref\|NP_0	3	5	24.0%	271	30037	5.5	catechol O-methyltransferase isoform MB-COMT [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.17356.17356.3	5.6837	0.4989	3180.605	3179.48	1	1999.8	36.1%	2	R.ILNHVLQHAEPGNAQSVLEAIDTYCEQK.E	3
step02.18870.18870.2	3.0049	0.1923	1807.433	1806.0863	2	1263.6	67.9%	2	R.YLPDTLLLEECGLLR.K	2
step04.17854.17854.3	5.068	0.4059	2337.616	2336.6687	1	1051.1	35.7%	1	K.GTVLLADNVICPGAPDFLAHVR.G	3

U	gi\|145309309\|ref\|NP_0	57	173	23.9%	2570	292278	5.8	probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 3 [Homo sapiens]
U	gi\|145309311\|ref\|NP_0	57	173	24.0%	2554	290461	5.8	probable ubiquitin carboxyl-terminal hydrolase FAF-X isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15337.15339.2	2.2243	0.4086	937.759	938.19073	2	608.5	78.6%	1	R.WVVPVLPK.G	2 2
step06.22349.22349.2	4.6829	0.409	1601.617	1600.8354	1	1385.5	67.9%	7	K.GELEVLLEAAIDLSK.K	2
step03.1348.1348.2	4.0875	0.4873	1728.461	1729.0084	1	1914.3	70.0%	2	K.GELEVLLEAAIDLSKK.G	2
step05.15913.15913.2	3.1689	0.237	1901.713	1902.1425	1	649.8	46.7%	1	K.ILTDEAVSGWKFEIHR.C	2
step05.16830.16830.3	6.653	0.5516	3141.386	3140.4023	1	1735.8	40.4%	6	K.FHIYNGTRPCESVSSSVQLPEDELFAR.S	3
step05.16072.16072.2	3.4301	0.4498	1519.81	1518.7012	1	765.5	75.0%	6	K.FGTLNGFQILHDR.F	2 2
step02.12424.12424.2	2.265	0.2997	1106.932	1107.2847	11	579.9	66.7%	1	R.LLQISSFNGK.M	2 2
step05.10381.10381.2	3.0479	0.5067	1312.618	1312.4558	1	888.2	80.0%	4	K.VISSVSYYTHR.H	2 2
step05.20430.20430.2	5.1233	0.4088	1928.945	1929.2759	1	2323.7	73.3%	5	R.MAEWIQQNNILSIVLR.D	2
step02.18276.18276.2	2.7496	0.2092	1828.241	1829.0466	1	652.3	65.6%	1	K.ALTLQDLDNIWAAQAGK.H	2 2
step05.18431.18431.3	4.0809	0.3847	2507.998	2506.842	1	676.7	33.0%	2	K.ALTLQDLDNIWAAQAGKHEAIVK.N	3 3
step03.39.39.2	4.1438	0.4869	2268.885	2269.4897	1	1852.1	73.5%	2	K.LAWDFSPEQLDHLFDCFK.A	2
step06.23003.23003.3	6.8639	0.4035	3115.159	3114.6074	1	1867.4	40.7%	2	K.VLNLLWNLAHSDDVPVDIMDLALSAHIK.I	3
step05.1271.1271.3	5.1327	0.3948	3129.377	3130.6067	1	1970.9	38.9%	3	K.VLNLLWNLAHSDDVPVDIM*DLALSAHIK.I	3
step03.15040.15040.2	3.0616	0.2616	1285.738	1285.5166	1	983.5	75.0%	3	R.TNDKWVIPALK.Q	2 2
step02.19763.19763.2	2.2117	0.1977	2580.497	2580.7568	11	196.4	23.6%	1	R.Y#S#HVQEVQERLNFLRFLLK.D	2 2
step06.18630.18630.2	4.6658	0.3657	1888.538	1889.2234	1	1907.8	70.0%	2	R.FLLKDGQLWLCAPQAK.Q	2 2
step04.1610.1610.2	3.1867	0.2728	2119.332	2118.4614	1	688.4	46.9%	1	R.AYMMDDLELIGLDYLWR.V	2
step05.19309.19309.2	4.9748	0.4714	1716.9	1717.0026	1	1683.0	75.0%	3	R.AIDLLKEIYTNLGPR.L	2 2
step03.16499.16499.3	5.5517	0.2818	2348.303	2348.5933	1	1158.0	45.8%	3	R.LQVNQVVIHEDFIQSCFDR.L	3
step05.13210.13210.2	2.4539	0.2312	857.831	858.0226	1	516.6	91.7%	2	K.HLSFVVR.F	2
step05.16678.16678.2	3.9427	0.2795	1888.486	1888.1108	1	887.0	65.6%	6	K.IELFVGGELIDPADDRK.L	2
step06.16038.16038.2	2.599	0.1083	1027.721	1027.2859	3	725.4	81.2%	1	R.KLIGQLNLK.D	2 2
step03.12477.12477.2	2.8609	0.1566	898.506	899.1129	1	435.8	92.9%	2	K.LIGQLNLK.D	2 2
step04.12088.12088.2	2.6349	0.2134	1142.32	1142.3737	1	564.4	72.2%	1	K.LIGQLNLKDK.S	2 2
step05.20178.20178.3	3.6753	0.332	1344.879	1344.649	1	1907.0	58.3%	1	K.SGGLPLVLSMLTR.N	3
step06.20700.20700.2	4.1333	0.549	1345.033	1344.649	1	1167.5	83.3%	10	K.SGGLPLVLSMLTR.N	2
step04.17443.17443.3	4.2111	0.3955	1360.519	1360.6484	1	1906.6	56.2%	1	K.SGGLPLVLSM*LTR.N	3
step05.17383.17383.2	4.3629	0.4596	1361.528	1360.6484	1	1305.0	75.0%	9	K.SGGLPLVLSM*LTR.N	2
step02.6677.6677.2	2.8922	0.2294	1439.448	1438.5483	12	358.3	59.1%	2	R.NNFLPNADM*ETR.R	2
step06.18186.18186.2	3.6021	0.5296	1313.24	1313.5732	1	1210.3	81.8%	2	K.LLLTAIGYGHVR.A	2 2
step06.20719.20719.3	3.9795	0.3	3284.41	3285.6538	1	2099.8	33.3%	2	R.HLLNYAYNSNINVPNAEVLLNNEIDWLK.R	3
step05.20562.20562.3	7.3998	0.4823	3441.791	3441.8403	1	1963.9	35.7%	6	R.HLLNYAYNSNINVPNAEVLLNNEIDWLKR.I	3
step02.15776.15776.2	4.5663	0.5523	1984.48	1985.1816	1	1931.2	66.7%	2	R.TGETGIEETILEGHLGVTK.E	2
step02.21743.21743.3	4.0001	0.4912	2335.498	2335.6628	1	2402.8	50.0%	2	K.ELIDDFIFPASNVYLQYMR.N	3
step02.21760.21760.2	3.9607	0.3812	2335.544	2335.6628	1	1115.7	63.9%	2	K.ELIDDFIFPASNVYLQYMR.N	2
step05.19424.19424.3	3.5884	0.283	2548.351	2547.9297	1	1129.3	36.9%	1	K.NAGATCYMNSVIQQLYM*IPSIR.N	3 3
step03.12296.12296.2	2.9555	0.1837	1092.115	1092.2732	1	1072.5	93.8%	2	R.KEYNIGVLR.H	2 2
step02.9410.9410.2	2.2451	0.2949	939.101	939.09247	3	414.9	83.3%	1	R.LQYYVPR.G	2
step06.23064.23064.3	4.5614	0.3912	2421.01	2421.6013	1	1650.3	40.0%	8	R.EQHDALEFFNSLVDSLDEALK.A	3 3
step06.23077.23077.2	5.229	0.5497	2422.849	2421.6013	1	1065.3	55.0%	22	R.EQHDALEFFNSLVDSLDEALK.A	2 2
step05.10364.10364.2	2.6185	0.3812	1025.567	1025.2504	1	885.0	88.9%	2	K.ALGHPAMLSK.V	2
step05.8456.8458.2	2.2282	0.1357	1041.127	1041.2498	3	402.4	66.7%	1	K.ALGHPAM*LSK.V	2
step02.8331.8331.2	3.9385	0.4164	1577.417	1577.6709	1	1700.8	80.8%	2	K.GDLLEGANAYHCEK.C	2 2
step06.18150.18150.1	1.8365	0.3075	1091.645	1092.3994	2	884.2	72.2%	1	K.LPPVLAIQLK.R	1
step06.18100.18100.2	3.7197	0.5228	1091.931	1092.3994	1	690.1	88.9%	4	K.LPPVLAIQLK.R	2
step02.11874.11874.2	2.5828	0.0873	1188.262	1187.2454	1	1030.1	92.9%	1	K.RFDYDWER.E	2 2
step02.15020.15020.2	3.2508	0.3841	1235.46	1235.3284	1	1605.0	93.8%	2	K.FNDYFEFPR.E	2 2
step02.1163.1163.2	2.7078	0.3219	1525.122	1523.733	4	300.5	53.8%	1	R.ELDMEPYTVAGVAK.L	2
step02.16236.16236.2	2.2962	0.332	1649.249	1649.9355	1	709.8	68.2%	1	R.M*QYSMEYFQFMK.K	2
step04.334.335.2	4.1071	0.3736	1740.917	1740.9313	1	1953.5	71.4%	4	R.GSASDWYDALCILLR.H	2
step05.19451.19451.2	3.057	0.3739	2168.949	2169.5696	2	589.1	42.5%	2	K.LSVPATFMLVSLDEGPGPPIK.Y	2
step03.19403.19403.3	4.143	0.3239	2169.241	2169.5696	1	1545.3	40.0%	2	K.LSVPATFMLVSLDEGPGPPIK.Y	3
step03.17547.17547.2	3.5431	0.4011	2185.388	2185.5688	1	539.4	50.0%	2	K.LSVPATFM*LVSLDEGPGPPIK.Y	2
step02.15998.15998.2	3.4335	0.3486	1178.805	1178.406	1	1798.9	94.4%	2	K.LYSVVSQLIR.C	2 2
step05.20143.20143.2	4.4402	0.4147	1918.552	1919.1283	1	2199.6	78.6%	2	R.KWTWAVEWLGDELER.R	2 2
step02.21324.21324.2	5.0568	0.4489	1791.3	1790.9553	1	1932.5	80.8%	3	K.WTWAVEWLGDELER.R	2 2

Similarities: gi|74319833|ref|NP_00(24:33)

gi|50593002|ref|NP_00

23.9%

255

28416

8.6

U2 small nuclear ribonucleoprotein A' [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.21915.21915.3	7.0285	0.5869	3155.789	3155.4602	1	3532.6	42.6%	1	R.GYKIPVIENLGATLDQFDAIDFSDNEIR.K	3
*	step05.16009.16009.2	2.9921	0.271	1059.421	1059.2864	1	872.5	87.5%	2	R.KLDGFPLLR.R	2
	step04.11170.11170.2	2.7859	0.1966	1347.574	1346.5137	1	811.9	70.8%	2	K.TFNPGAGLPTDKK.K	2 2
	step03.10942.10942.2	2.7343	0.1714	1126.405	1126.2913	1	1308.7	90.0%	2	K.GLLQSGQIPGR.E	2 2

Similarities: gi|310127973|ref|XP_0(2:2)

gi|50592994|ref|NP_00

23.8%

105

11737

4.9

thioredoxin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8620.8620.2	3.176	0.3042	1336.71	1337.4172	1	1220.6	75.0%	1	K.TAFQEALDAAGDK.L	2
*	step06.17956.17956.2	2.6884	0.1743	1464.13	1464.7568	1	451.0	72.7%	1	K.MIKPFFHSLSEK.Y	2

U	gi\|78000181\|ref\|NP_00	7	13	23.7%	215	23432	10.9	60S ribosomal protein L14 [Homo sapiens]
U	gi\|78000183\|ref\|NP_00	7	13	23.7%	215	23432	10.9	60S ribosomal protein L14 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12036.12037.1	2.0189	0.2663	1233.21	1233.4003	1	394.7	59.1%	1	R.VAYVSFGPHAGK.L	1
step05.12016.12017.2	4.0126	0.4676	1234.281	1233.4003	1	821.6	72.7%	2	R.VAYVSFGPHAGK.L	2
step02.15356.15356.3	3.7364	0.2309	1355.255	1355.5653	1	1476.9	56.8%	2	K.LVAIVDVIDQNR.A	3
step03.15308.15308.2	4.2162	0.4552	1355.979	1355.5653	1	2092.9	86.4%	3	K.LVAIVDVIDQNR.A	2
step03.8428.8428.2	2.7908	0.2349	1216.009	1216.363	1	783.8	75.0%	3	R.ALVDGPCTQVR.R	2
step05.9955.9955.2	2.2825	0.1318	877.997	878.07733	4	724.7	100.0%	1	R.RQAMPFK.C	2
step03.7708.7708.2	2.3996	0.1676	978.453	979.09283	4	448.4	62.5%	1	K.AALLKAS#PK.K	2

U	gi\|14141161\|ref\|NP_00	22	58	23.6%	806	88980	5.8	heterogeneous nuclear ribonucleoprotein U isoform b [Homo sapiens]
U	gi\|74136883\|ref\|NP_11	22	58	23.0%	825	90585	6.0	heterogeneous nuclear ribonucleoprotein U isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.5722.5722.3	6.6632	0.5833	3128.418	3128.292	1	1994.1	33.9%	2	R.LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR.S	3
step05.15040.15040.2	2.9494	0.3315	1716.163	1715.9315	1	574.1	55.9%	7	K.SSGPTSLFAVTVAPPGAR.Q	2
step05.15148.15148.3	3.7707	0.3745	1716.885	1715.9315	1	819.1	47.1%	1	K.SSGPTSLFAVTVAPPGAR.Q	3
step02.13425.13425.2	3.6954	0.4621	1699.462	1698.8131	1	1393.9	79.2%	2	R.GYFEYIEENKYSR.A	2
step06.21156.21156.2	4.0307	0.4968	2032.631	2032.3083	1	1773.7	61.1%	1	R.LSASSLTMESFAFLWAGGR.A	2
step02.8531.8531.1	2.0014	0.231	1048.372	1049.1621	2	224.0	61.1%	1	K.NGQDLGVAFK.I	1
step02.8552.8552.2	3.2998	0.4386	1049.266	1049.1621	1	537.2	72.2%	2	K.NGQDLGVAFK.I	2
step02.18555.18556.2	3.941	0.2879	2725.778	2726.0317	1	836.5	57.1%	2	K.EKPYFPIPEEYTFIQNVPLEDR.V	2
step02.18536.18536.3	6.6236	0.4006	2725.873	2726.0317	1	1515.9	42.9%	4	K.EKPYFPIPEEYTFIQNVPLEDR.V	3
step02.15209.15209.2	5.5865	0.4972	1706.669	1706.0583	1	2153.6	83.3%	5	K.KDCEVVMMIGLPGAGK.T	2
step02.11513.11513.2	4.5136	0.4968	1737.46	1738.0573	1	1257.2	86.7%	1	K.KDCEVVMMIGLPGAGK.T	2
step04.14596.14596.3	5.3081	0.5216	2189.227	2188.45	1	1462.9	42.1%	2	K.HAAENPGKYNILGTNTIMDK.M	3
step04.14632.14632.2	6.0339	0.4889	2189.285	2188.45	1	1272.9	65.8%	4	K.HAAENPGKYNILGTNTIMDK.M	2
step02.9452.9452.2	2.5184	0.2333	858.17	858.0209	4	463.8	91.7%	1	K.LNTLLQR.A	2
step02.9735.9735.1	2.2164	0.2172	819.61	819.9711	12	319.1	75.0%	2	K.FIEIAAR.K	1
step02.9758.9758.2	2.4835	0.2072	820.007	819.9711	5	682.5	100.0%	1	K.FIEIAAR.K	2
step04.13320.13320.2	5.5838	0.5013	1804.551	1804.9884	1	1410.5	86.7%	1	K.RNFILDQTNVSAAAQR.R	2
step02.12296.12296.2	4.6362	0.4231	1648.497	1648.802	1	3477.0	89.3%	2	R.NFILDQTNVSAAAQR.R	2
step06.18060.18060.2	3.561	0.4923	1259.297	1258.5114	1	1295.6	88.9%	2	R.KMCLFAGFQR.K	2
step06.16887.16887.2	2.575	0.369	1274.201	1274.5107	1	705.1	83.3%	2	R.KM*CLFAGFQR.K	2
step06.18009.18009.2	3.2507	0.4971	1130.134	1130.3385	1	1263.6	93.8%	11	K.MCLFAGFQR.K	2
step03.13961.13961.2	2.9775	0.4481	1146.061	1146.3379	1	1166.4	87.5%	2	K.M*CLFAGFQR.K	2

U	gi\|208431833\|ref\|NP_0	18	43	23.6%	660	72391	9.3	polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
U	gi\|4504715\|ref\|NP_003	18	43	24.2%	644	70783	9.3	polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
U	gi\|208431836\|ref\|NP_0	18	43	24.7%	631	69579	9.5	polyadenylate-binding protein 4 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13823.13823.2	2.4689	0.3377	1143.66	1144.3481	1	622.5	90.0%	2	K.FSPAGPVLSIR.V	2
step04.13834.13834.1	1.9492	0.3436	1144.654	1144.3481	1	177.5	55.0%	1	K.FSPAGPVLSIR.V	1
step02.12948.12948.2	3.2989	0.3757	1929.538	1930.0663	1	1080.2	59.4%	2	R.SLGYAYVNFQQPADAER.A	2 2
step02.14236.14236.2	2.6498	0.3435	1267.057	1267.4767	1	546.1	70.0%	1	R.ALDTMNFDVIK.G	2 2
step02.19659.19659.2	4.0559	0.5395	2318.831	2319.4658	1	1408.2	55.3%	2	K.NFGEEVDDESLKELFSQFGK.T	2
step02.19670.19670.3	4.3449	0.5009	2319.71	2319.4658	1	474.5	35.5%	2	K.NFGEEVDDESLKELFSQFGK.T	3
step03.14422.14422.2	2.9955	0.3725	1399.439	1399.5734	1	1172.3	79.2%	2	R.KEFSPFGSITSAK.V	2
step02.15089.15089.2	4.1756	0.5202	1664.202	1663.8021	1	1286.0	67.9%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2
step06.17254.17254.2	4.0714	0.4492	1515.615	1515.825	1	1520.0	92.3%	2	R.IVGSKPLYVALAQR.K	2
step06.18989.18989.2	4.7792	0.4344	1671.479	1671.0005	1	911.8	75.0%	4	R.LFPLIQTMHSNLAGK.I	2
step06.17845.17845.2	4.001	0.4144	1686.046	1686.9999	1	1394.6	85.7%	2	R.LFPLIQTM*HSNLAGK.I	2
step03.358.358.3	5.683	0.5274	2742.324	2742.1626	1	1806.3	41.3%	8	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
step02.21158.21158.3	5.2884	0.4644	2758.766	2758.162	1	1624.1	39.1%	2	K.ITGM*LLEIDNSELLHMLESPESLR.S	3 3
step02.20488.20488.3	5.3817	0.5277	2759.474	2758.162	1	976.4	32.6%	5	K.ITGMLLEIDNSELLHM*LESPESLR.S	3 3
step02.19181.19181.3	3.7417	0.316	2772.979	2774.1614	1	724.2	27.2%	1	K.ITGMLLEIDNSELLHMLESPESLR.S	3 3
step05.14010.14010.2	5.1167	0.6516	1703.347	1703.924	1	1946.2	80.0%	2	R.SKVDEAVAVLQAHHAK.K	2
step05.14041.14041.3	4.2453	0.3353	1703.793	1703.924	1	1872.6	53.3%	2	R.SKVDEAVAVLQAHHAK.K	3
step03.12364.12364.2	3.0847	0.3056	1488.223	1488.6733	1	680.7	65.4%	2	K.VDEAVAVLQAHHAK.K	2

Similarities: gi|46367787|ref|NP_00(7:11)
gi|45238849|ref|NP_11(1:17)
gi|185135971|ref|NP_0(1:17)

gi|5453998|ref|NP_006

23.5%

1038

119516

4.8

importin-7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18705.18705.2	3.9767	0.4249	1668.5	1668.0397	1	1403.9	78.6%	2	R.SPLVAAM*QHFLPVLK.D	2
*	step03.16366.16366.2	2.823	0.2979	1274.262	1273.549	1	689.0	68.2%	1	K.AFAVGVQQVLLK.V	2
*	step04.773.773.3	4.9291	0.4464	2971.375	2970.379	1	1082.8	28.0%	3	R.MKFDVFEDFISPTTAAQTLLFTACSK.R	3
*	step06.110.110.3	5.6658	0.4071	2986.516	2986.3782	1	1778.4	37.0%	4	R.M*KFDVFEDFISPTTAAQTLLFTACSK.R	3
*	step06.1509.1509.3	4.2148	0.366	1681.786	1682.0216	2	1284.1	43.3%	4	K.DGALHMIGSLAEILLK.K	3
*	step06.1485.1485.2	4.6397	0.4599	1682.609	1682.0216	1	2356.9	80.0%	6	K.DGALHMIGSLAEILLK.K	2
*	step04.19932.19932.2	3.6951	0.1846	1697.577	1698.021	1	823.4	63.3%	6	K.DGALHM*IGSLAEILLK.K	2
*	step04.20022.20022.3	4.13	0.2911	1698.776	1698.021	2	1414.3	45.0%	1	K.DGALHM*IGSLAEILLK.K	3
*	step05.19307.19307.3	4.1813	0.3989	3272.355	3273.7502	1	385.9	25.0%	2	K.IYKDQMEYMLQNHVFPLFSSELGYMR.A	3
*	step02.21585.21585.3	5.381	0.5129	2838.407	2837.246	1	1924.2	40.9%	4	K.DQMEYMLQNHVFPLFSSELGYMR.A	3
*	step04.19435.19435.2	3.0625	0.4532	2311.512	2311.7275	1	574.9	42.5%	2	R.EMPVKVEAAIALQVLISNQEK.A	2
*	step04.19437.19437.3	4.3263	0.3482	2312.385	2311.7275	1	976.6	38.8%	1	R.EMPVKVEAAIALQVLISNQEK.A	3
*	step01.6302.6302.2	3.3233	0.3347	1519.126	1519.593	1	1711.2	83.3%	2	R.ETENDDLTNVIQK.M	2
	step03.15849.15849.2	3.9248	0.4445	1229.8	1229.5278	1	1604.1	88.9%	4	K.LLEVIILQCK.G	2 2 2
*	step02.20418.20418.3	4.4516	0.4226	1832.335	1832.0839	1	2314.8	55.0%	1	R.GIDQCIPLFVEAALER.L	3
*	step02.20409.20409.2	4.5567	0.4203	1832.364	1832.0839	1	1351.2	76.7%	3	R.GIDQCIPLFVEAALER.L	2
*	step06.23260.23260.3	4.8105	0.4045	3499.33	3499.8286	1	897.6	29.5%	3	R.FPNNVEPVTNHFITQWLNDVDCFLGLHDR.K	3
*	step02.10878.10880.1	1.8816	0.1231	1090.958	1091.2454	13	112.2	56.2%	1	K.AIFQTIQNR.N	1
*	step02.16784.16784.3	4.2149	0.5603	2056.478	2056.2266	1	1255.2	51.6%	2	R.NPVWYQALTHGLNEEQR.K	3
*	step05.16828.16828.2	6.2017	0.4916	2184.189	2184.3994	1	1819.8	73.5%	2	R.NPVWYQALTHGLNEEQRK.Q	2
*	step05.16810.16810.3	4.0211	0.5067	2184.907	2184.3994	1	704.6	42.6%	2	R.NPVWYQALTHGLNEEQRK.Q	3
*	step02.11730.11730.2	2.7112	0.4412	1500.729	1500.6825	1	1375.5	87.5%	1	R.KQLQDIATLADQR.R	2
*	step04.13199.13199.2	2.5662	0.1167	1656.806	1656.8688	1	514.9	53.8%	1	R.KQLQDIATLADQRR.A	2
*	step01.8150.8150.2	2.7607	0.2376	1980.883	1981.2198	1	898.1	63.2%	1	K.FSAPVVPSSFNFGGPAPGMN.-	2

Similarities: gi|53759103|ref|NP_00(1:23)
gi|300360505|ref|NP_0(1:23)

gi|24307939|ref|NP_03

23.5%

541

59671

5.6

T-complex protein 1 subunit epsilon [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.10549.10549.2	2.926	0.3039	1714.116	1714.9669	1	874.8	67.9%	1	K.GVIVDKDFSHPQM*PK.K	2
*	step06.17686.17686.2	3.1397	0.3104	1612.121	1611.9429	1	889.0	69.2%	2	K.IAILTCPFEPPKPK.T	2
*	step02.19002.19002.3	4.2514	0.3902	3381.197	3381.6936	3	543.6	25.9%	1	K.ETGANLAICQWGFDDEANHLLLQNNLPAVR.W	3
*	step05.20207.20207.2	3.6897	0.3539	1739.511	1739.9962	1	1555.8	62.5%	1	R.WVGGPEIELIAIATGGR.I	2
*	step03.19102.19102.2	5.3402	0.5785	1669.747	1668.9147	1	2359.8	76.7%	5	K.LGFAGLVQEISFGTTK.D	2
*2	step03.13929.13929.2	3.2663	0.3758	1185.384	1184.3641	1	738.3	88.9%	3	R.SLHDALCVIR.N	2 2
*	step02.12202.12202.2	2.2972	0.2443	1498.236	1498.7234	1	508.2	75.0%	1	K.EMNPALGIDCLHK.G	2
*	step05.12414.12414.2	3.5889	0.3786	1403.705	1403.6765	1	1031.3	77.3%	1	K.KQQISLATQMVR.M	2
*	step05.10058.10058.2	2.7145	0.2371	1419.722	1419.6759	1	663.5	72.7%	1	K.KQQISLATQM*VR.M	2

Similarities: gi|38455427|ref|NP_00(1:8)

gi|4503523|ref|NP_003

23.2%

548

63973

6.0

eukaryotic translation initiation factor 3 subunit D [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8212.8212.2	3.2245	0.391	1510.928	1511.6206	1	1340.5	79.2%	2	K.VADWTGATYQDKR.Y	2
*	step06.19216.19216.2	4.7452	0.2813	1460.51	1459.7817	1	1876.4	86.4%	7	R.NMLQFNLQILPK.S	2
*	step06.18335.18335.2	4.5614	0.2704	1476.312	1475.7811	1	1567.9	86.4%	5	R.NM*LQFNLQILPK.S	2
*	step03.16559.16559.3	5.2256	0.4296	2013.219	2013.2805	1	2234.2	53.3%	2	R.SDWEVKEEMDFPQLMK.M	3
*	step02.12084.12084.2	3.6489	0.4252	1615.439	1615.8119	1	1303.6	73.1%	2	R.IFHTVTTTDDPVIR.K	2
*	step04.12471.12471.2	4.0978	0.4711	1743.49	1743.9849	1	1388.2	75.0%	3	R.IFHTVTTTDDPVIRK.L	2
*	step04.12472.12472.3	3.504	0.381	1744.046	1743.9849	1	1134.6	46.4%	1	R.IFHTVTTTDDPVIRK.L	3
*	step02.20807.20807.2	2.9866	0.4074	2170.624	2171.454	1	1058.0	55.3%	1	K.TQGNVFATDAILATLMSCTR.S	2
*	step03.15038.15038.2	2.5677	0.2349	1351.998	1352.5199	1	1183.9	75.0%	1	R.SVYSWDIVVQR.V	2
*	step05.15229.15229.3	3.6967	0.3944	2311.899	2311.5566	1	1090.4	43.1%	1	R.NLAMEATYINHNFSQQCLR.M	3
*	step05.15248.15248.2	5.5176	0.559	2312.33	2311.5566	1	956.5	58.3%	2	R.NLAMEATYINHNFSQQCLR.M	2
*	step03.14848.14848.2	3.8313	0.5875	2326.734	2327.556	1	628.8	58.3%	2	R.NLAM*EATYINHNFSQQCLR.M	2
*	step02.17703.17703.2	2.8302	0.3425	1443.922	1443.6725	1	1169.7	81.8%	4	R.WKLGDDIDLIVR.C	2
*	step03.12147.12147.2	2.5897	0.2147	1104.211	1104.324	3	701.0	81.2%	2	K.YLILKDPNK.Q	2

gi|221136939|ref|NP_0

23.0%

499

55456

5.8

U4/U6 small nuclear ribonucleoprotein Prp31 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19617.19617.2	4.6536	0.4112	2033.377	2033.3159	1	1339.2	75.0%	12	K.RFPELESLVPNALDYIR.T	2
*	step06.20008.20008.2	4.7927	0.4828	1905.618	1906.279	1	1456.9	72.2%	4	R.MSFIAPNLSIIIGASTAAK.I	2
*	step06.20019.20019.3	4.3082	0.2223	1906.136	1906.279	1	2222.0	48.6%	2	R.MSFIAPNLSIIIGASTAAK.I	3
*	step06.19363.19363.2	5.3051	0.5733	1921.916	1922.2784	1	1973.3	83.3%	5	R.M*SFIAPNLSIIIGASTAAK.I	2
*	step05.14424.14424.2	3.0188	0.3225	1474.527	1475.7996	1	1745.4	79.2%	1	K.MPACNIMLLGAQR.K	2
*	step04.13552.13552.2	3.5298	0.3587	1490.883	1491.7991	1	1307.1	83.3%	2	K.M*PACNIMLLGAQR.K	2
*	step04.12945.12945.2	3.2357	0.419	1491.328	1491.7991	1	832.3	75.0%	2	K.MPACNIM*LLGAQR.K	2
*	step04.11639.11639.2	3.1386	0.2831	1507.936	1507.7985	1	791.9	83.3%	1	K.MPACNIMLLGAQR.K	2
*	step06.19139.19139.3	5.1712	0.4382	3390.315	3389.7588	1	1206.0	30.8%	5	K.TLSGFSSTSVLPHTGYIYHSDIVQSLPPDLR.R	3
*	step02.5540.5540.2	3.1205	0.3507	1351.362	1351.487	1	1091.9	80.0%	3	K.VGYELKDEIER.K	2
*	step02.19593.19593.3	4.8077	0.5275	2673.825	2673.8923	1	1098.7	35.9%	3	R.MSFGEIEEDAYQEDLGFSLGHLGK.S	3

U	gi\|73622130\|ref\|NP_00	4	5	23.0%	152	16932	8.2	BolA-like protein 2 [Homo sapiens]
U	gi\|85797673\|ref\|NP_00	4	5	23.0%	152	16932	8.2	bolA-like protein 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.4230.4230.2	3.574	0.5523	1870.573	1870.9524	1	1400.1	66.7%	1	R.DLEAEHVEVEDTTLNR.C	2
step03.4214.4214.3	4.0491	0.396	1870.734	1870.9524	1	1117.7	50.0%	1	R.DLEAEHVEVEDTTLNR.C	3
step04.16689.16689.2	4.6056	0.5202	2219.582	2220.5066	1	1184.6	52.8%	2	R.LVNACLAEELPHIHAFEQK.T	2
step04.16669.16671.3	4.0939	0.303	2220.251	2220.5066	1	633.6	37.5%	1	R.LVNACLAEELPHIHAFEQK.T	3

gi|310129365|ref|XP_0

22.9%

1092

121714

5.5

PREDICTED: DNA damage-binding protein 1-like isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16577.16577.2	4.3357	0.4571	1688.564	1688.0043	1	1835.5	78.6%	4	R.LEIYVVTAEGLRPVK.E	2 2 2 2
step06.18702.18702.2	3.1309	0.379	1205.543	1204.5101	1	1419.0	83.3%	4	K.IAVMELFRPK.G	2 2 2 2
step05.14327.14327.2	2.581	0.3869	1220.343	1220.5095	2	358.8	77.8%	2	K.IAVM*ELFRPK.G	2 2 2 2
step04.18418.18418.2	2.9426	0.324	1034.122	1034.2736	1	918.1	75.0%	4	K.DLLFILTAK.Y	2 2 2 2
step02.16480.16480.2	2.3074	0.2398	1983.998	1984.2367	1	424.6	61.8%	2	R.IGRPSETGIIGIIDPECR.M	2 2
step02.12760.12760.2	3.5466	0.4618	1195.807	1195.3903	1	1211.0	88.9%	2	R.LEELHVIDVK.F	2 2
step04.15168.15168.2	2.4547	0.2704	1098.87	1099.3904	1	810.1	72.2%	3	K.YLAIAPPIIK.Q	2 2 2
step05.15053.15053.2	4.2631	0.4173	1771.764	1771.9983	1	1006.4	65.6%	2	R.NGIGIHEHASIDLPGIK.G	2 2 2
step05.15713.15713.2	4.2164	0.4529	1644.573	1644.8981	1	1559.4	83.3%	3	R.ALYYLQIHPQELR.Q	2 2 2 2
step05.14986.14986.2	2.8436	0.3441	1084.213	1084.2927	1	461.7	81.2%	3	K.LPSFELLHK.E	2 2 2 2
step02.12480.12480.2	2.3011	0.1007	1115.299	1115.3286	1	1099.3	88.9%	1	K.EMLGGEIIPR.S	2 2 2 2
step05.11930.11930.2	3.0115	0.3365	1313.884	1313.5715	1	735.6	77.3%	2	K.KVTLGTQPTVLR.T	2 2 2 2
step02.10110.10110.2	2.3819	0.3399	1185.762	1185.3986	2	289.1	60.0%	1	K.VTLGTQPTVLR.T	2 2 2 2
step05.14197.14197.2	3.9746	0.4375	2584.91	2585.8047	1	698.2	47.7%	3	R.SLSTTNVFACSDRPTVIYSSNHK.L	2 2 2 2
step06.17016.17016.3	4.0366	0.2186	2585.398	2585.8047	1	768.0	33.0%	2	R.SLSTTNVFACSDRPTVIYSSNHK.L	3 3 3 3
step06.17461.17461.2	6.6834	0.5997	2063.079	2062.2993	1	3031.1	84.4%	5	R.KICYQEVSQCFGVLSSR.I	2 2 2 2
step02.11111.11111.3	4.8332	0.5051	2954.218	2954.1514	1	1754.9	34.5%	1	R.IEVQDTSGGTTALRPSASTQALSSSVSSSK.L	3 3 3 3
step03.16433.16433.2	4.4489	0.4827	1884.66	1885.1271	1	1250.7	67.9%	4	R.TECNHYNNIMALYLK.T	2 2 2 2
step04.16399.16399.3	4.1967	0.2501	1885.83	1885.1271	1	1145.6	51.8%	2	R.TECNHYNNIMALYLK.T	3 3 3 3
step02.17392.17392.2	3.3167	0.4078	1466.044	1465.7432	1	1600.8	75.0%	1	K.TKGDFILVGDLMR.S	2 2 2 2
step05.17713.17713.2	4.1365	0.5869	2181.957	2181.5403	1	406.3	50.0%	8	R.SVLLLAYKPMEGNFEEIAR.D	2 2 2 2
step04.17783.17783.3	6.1375	0.5388	2182.4	2181.5403	1	2552.3	51.4%	3	R.SVLLLAYKPMEGNFEEIAR.D	3 3 3 3

Similarities: gi|310129361|ref|XP_0(18:4)
gi|310129363|ref|XP_0(20:2)
gi|148529014|ref|NP_0(22:0)

gi|124494254|ref|NP_0

22.8%

394

43787

6.6

proliferation-associated protein 2G4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.13678.13678.2	2.7017	0.4017	1183.183	1183.3362	1	906.9	85.0%	3	K.AAHLCAEAALR.L	2
*	step05.10393.10393.2	3.4457	0.4753	1928.493	1928.1383	1	782.0	62.5%	2	R.LVKPGNQNTQVTEAWNK.V	2
*	step06.18354.18354.3	5.2239	0.4845	2169.649	2170.4712	1	1067.1	44.4%	1	K.VAHSFNCTPIEGMLSHQLK.Q	3
*	step06.18371.18371.2	6.0306	0.5951	2170.588	2170.4712	1	1582.5	63.9%	2	K.VAHSFNCTPIEGMLSHQLK.Q	2
*	step02.10512.10512.1	1.8663	0.1094	984.89	985.0749	3	176.7	64.3%	1	R.AFFSEVER.R	1
*	step05.15935.15935.2	3.1347	0.1481	1254.338	1254.4861	1	919.1	83.3%	2	R.RFDAMPFTLR.A	2
*	step02.16767.16767.2	4.6842	0.4744	1631.528	1630.8682	1	1367.2	83.3%	2	K.HELLQPFNVLYEK.E	2
*	step05.16255.16255.2	2.4768	0.2791	1376.877	1376.7162	1	999.7	77.3%	1	K.FTVLLMPNGPMR.I	2
*	step05.15052.15052.2	3.1418	0.222	1392.46	1392.7156	1	798.6	81.8%	2	K.FTVLLMPNGPM*R.I	2

U	gi\|4506621\|ref\|NP_000	6	12	22.8%	145	17258	10.6	60S ribosomal protein L26 [Homo sapiens]
U	gi\|7705813\|ref\|NP_057	6	12	22.8%	145	17256	10.6	60S ribosomal protein L26-like 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14350.14350.2	2.4352	0.237	1341.615	1342.5486	2	382.0	65.0%	1	-.MKFNPFVTSDR.S	2
step05.12994.12995.2	3.9249	0.435	1359.305	1358.548	1	1014.7	80.0%	4	-.M*KFNPFVTSDR.S	2
step02.11938.11938.2	2.6487	0.3702	1082.56	1083.1786	1	706.0	93.8%	2	K.FNPFVTSDR.S	2
step05.12880.12880.2	2.6352	0.2892	1084.381	1084.2927	1	955.5	92.9%	2	K.KYVIYIER.V	2
step02.11872.11872.2	2.6564	0.2996	956.215	956.1198	1	676.1	100.0%	1	K.YVIYIER.V	2
step06.14956.14956.2	2.4624	0.3654	1418.413	1418.5831	1	551.1	57.7%	2	K.ANGTTVHVGIHPSK.V	2

gi|21361399|ref|NP_05

22.6%

589

65309

5.1

serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15925.15925.3	5.8974	0.5052	2214.142	2214.4656	1	2668.6	50.0%	2	R.AISHEHSPSDLEAHFVPLVK.R	3
*	step05.15936.15936.2	4.8974	0.5839	2214.799	2214.4656	1	1254.0	60.5%	2	R.AISHEHSPSDLEAHFVPLVK.R	2
*	step04.14461.14461.2	3.0902	0.4247	1265.788	1266.3904	1	597.8	75.0%	2	K.RLAGGDWFTSR.T	2
*	step05.20617.20617.3	4.4932	0.4097	1557.939	1557.9236	1	2572.4	55.0%	2	K.SALASVIMGLSPILGK.D	3
*	step05.20537.20537.2	3.0052	0.3972	1558.264	1557.9236	1	935.1	56.7%	3	K.SALASVIMGLSPILGK.D	2
*	step03.122.122.3	7.6326	0.5798	2751.623	2752.109	1	3211.5	50.0%	6	K.DNTIEHLLPLFLAQLKDECPEVR.L	3
*	step03.168.168.2	2.6988	0.2113	2752.061	2752.109	1	547.1	40.9%	1	K.DNTIEHLLPLFLAQLKDECPEVR.L	2
	step03.18269.18269.2	2.9886	0.2594	1943.414	1943.2277	1	562.2	50.0%	1	R.LNIISNLDCVNEVIGIR.Q	2
*	step06.17209.17209.2	2.412	0.2464	1497.986	1498.7529	1	658.2	62.5%	1	K.FGKEWAHATIIPK.V	2
*	step03.11860.11860.2	3.4196	0.4685	1473.102	1473.6823	1	694.9	70.8%	4	K.VLAMSGDPNYLHR.M	2
*	step03.10160.10160.2	3.6645	0.49	1489.062	1489.6816	1	656.0	70.8%	2	K.VLAM*SGDPNYLHR.M	2
*	step02.16462.16462.2	5.2894	0.5581	2196.647	2195.5417	1	1247.2	57.9%	1	K.IGPILDNSTLQSEVKPILEK.L	2

U	gi\|38045913\|ref\|NP_93	3	6	22.6%	177	19654	5.6	nucleoside diphosphate kinase A isoform a [Homo sapiens]
U	gi\|4557797\|ref\|NP_000	3	6	26.3%	152	17149	6.2	nucleoside diphosphate kinase A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12349.12349.2	3.0785	0.4421	1346.666	1345.572	2	512.0	59.1%	3	R.TFIAIKPDGVQR.G	2 2 2
step04.13984.13984.2	2.637	0.3513	985.27	985.2058	1	1014.4	87.5%	2	R.GLVGEIIKR.F	2 2 2
step05.17077.17077.2	2.3983	0.236	2149.301	2149.5217	6	179.0	36.1%	1	K.YMHSGPVVAMVWEGLNVVK.T	2 2

Similarities: gi|4505409|ref|NP_002(2:1)
gi|66392203|ref|NP_00(3:0)

U	gi\|109715854\|ref\|NP_0	2	2	22.4%	147	15892	8.2	calcium-regulated heat stable protein 1 [Homo sapiens]
U	gi\|109715858\|ref\|NP_0	2	2	22.4%	147	15892	8.2	calcium-regulated heat stable protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.17218.17218.2	2.5941	0.2202	2029.731	2030.0618	157	152.7	25.0%	1	R.T#RTFSAT#VRASQGPVYK.G	2
	step06.18595.18595.2	2.9088	0.2948	1676.627	1676.9816	2	535.3	46.7%	1	K.LQAVEVVITHLAPGTK.H	2

U	gi\|255918171\|ref\|NP_0	13	57	22.3%	372	41804	4.9	tubulin beta-8 chain isoform 2 [Homo sapiens]
U	gi\|42558279\|ref\|NP_81	13	57	18.7%	444	49776	4.9	tubulin beta-8 chain isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.18610.18610.3	8.4842	0.5422	3441.755	3441.7993	1	4986.2	41.4%	8	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3
2	step02.17018.17018.3	6.608	0.6359	3313.031	3313.6262	1	2685.9	35.5%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3
	step02.11320.11320.2	3.0929	0.3358	1130.76	1131.2664	1	905.4	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2
	step05.10818.10818.1	1.8152	0.1126	1258.713	1259.4392	1	313.3	60.0%	1	R.FPGQLNADLRK.L	1 1 1 1 1 1 1 1 1
	step05.11218.11219.2	2.7952	0.2822	1260.2	1259.4392	1	953.1	85.0%	6	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2
	step06.17637.17637.2	3.5322	0.4873	1273.324	1272.5878	1	1276.5	85.0%	5	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2
	step06.16197.16197.2	3.5579	0.4838	1287.965	1288.5872	1	1079.2	90.0%	3	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2
	step04.14925.14926.1	2.8788	0.3227	1144.203	1144.4148	7	272.2	66.7%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1
	step05.14878.14879.2	4.0156	0.4698	1145.278	1144.4148	1	996.5	94.4%	11	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2
	step04.13422.13423.2	3.8664	0.3852	1160.598	1160.4142	1	1041.8	88.9%	7	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2
	step02.6651.6651.2	2.4772	0.3013	1028.571	1029.1658	1	1169.2	93.8%	3	K.TAVCDIPPR.G	2 2 2 2 2
	step04.10962.10962.2	2.4628	0.3639	1327.593	1327.5485	2	587.8	63.6%	1	K.TAVCDIPPRGLK.M	2 2 2 2 2
	step03.18534.18534.2	2.285	0.1497	1886.098	1886.1615	17	129.9	40.6%	1	K.MSATFIGNNTAIQELFK.R	2

gi|41406084|ref|NP_00

22.2%

203

21938

6.5

glutathione peroxidase 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17872.17872.3	5.4897	0.4982	3157.007	3157.519	1	601.1	31.5%	2	R.GLVVLGFPCNQFGHQENAKNEEILNSLK.Y	3
*	step05.17676.17676.3	4.3335	0.2984	1988.863	1989.2852	1	1020.2	43.8%	2	K.YVRPGGGFEPNFMLFEK.C	3
*	step05.17687.17687.2	4.1217	0.3453	1990.433	1989.2852	1	1104.3	59.4%	1	K.YVRPGGGFEPNFMLFEK.C	2
*	step05.16675.16675.2	2.8279	0.172	2004.662	2005.2845	1	267.4	50.0%	2	K.YVRPGGGFEPNFM*LFEK.C	2

gi|5902034|ref|NP_008

22.0%

501

55828

4.8

periodic tryptophan protein 1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17028.17028.3	4.8347	0.3543	2410.722	2410.6665	1	1229.7	41.2%	6	K.VQTLQFHPFEAQTLISGSYDK.S	3
*	step06.19494.19494.3	7.3374	0.6006	3072.378	3071.3003	1	2750.4	41.0%	7	R.VTWNHFSPCHFLASTDDGFVYNLDAR.S	3
*	step03.16505.16505.3	5.2812	0.5593	2743.863	2744.007	1	2095.7	38.5%	3	R.SDKPIFTLNAHNDEISGLDLSSQIK.G	3
*	step06.18659.18659.2	2.7959	0.1876	1764.011	1765.0089	22	300.0	46.4%	1	K.IWDILGDRPSLVHSR.D	2
*	step04.19889.19889.3	5.3502	0.4143	2656.741	2656.03	1	1730.3	39.8%	6	K.MGVLFCSSCCPDLPFIYAFGGQK.E	3
*	step03.19907.19907.2	2.564	0.4095	2656.98	2656.03	1	273.2	36.4%	2	K.MGVLFCSSCCPDLPFIYAFGGQK.E	2
*	step03.19144.19144.3	4.6476	0.3822	2671.874	2672.0293	1	2132.8	39.8%	1	K.M*GVLFCSSCCPDLPFIYAFGGQK.E	3

gi|237820620|ref|NP_1

22.0%

446

49419

4.9

glutamate-rich WD repeat-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.19067.19067.3	4.4027	0.3265	2603.925	2603.8916	1	1725.0	39.3%	3	R.GPPLREGEELVMDEEAYVLYHR.A	3
*	step02.14073.14073.2	2.704	0.2416	1535.423	1535.7202	1	749.5	73.1%	1	R.AQTGAPCLSFDIVR.D	2
*	step06.18793.18793.3	7.2592	0.6286	3233.026	3232.458	1	2874.9	37.5%	3	R.DHLGDNRTELPLTLYLCAGTQAESAQSNR.L	3
*	step02.16403.16403.2	4.435	0.449	1773.924	1773.9663	1	2145.3	83.3%	2	R.VSWLGEEPVAGVWSEK.G	2
*	step05.19351.19351.2	4.8821	0.5661	1953.843	1954.3052	1	1024.2	68.8%	2	R.RLLQVVEEPQALAAFLR.D	2
*	step02.19773.19773.2	3.4247	0.3821	1797.598	1798.1188	1	2382.8	80.0%	1	R.LLQVVEEPQALAAFLR.D	2
*	step02.19815.19815.3	5.0029	0.4662	1798.502	1798.1188	1	2808.0	56.7%	2	R.LLQVVEEPQALAAFLR.D	3

gi|24586679|ref|NP_73

22.0%

127

14167

10.3

histone H2B type 1-A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.4559.4559.2	2.3412	0.1829	1495.792	1495.5125	113	291.0	29.2%	1	-.MPEVSSKGAT#IS#K.K	3 2
*	step02.16554.16554.2	2.8081	0.0993	1778.594	1778.0433	2	510.0	46.4%	1	K.AM*SIMNSFVTDIFER.I	2

gi|16117791|ref|NP_00

21.8%

110

12538

11.1

60S ribosomal protein L35a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.9764.9764.1	1.8453	0.152	769.504	769.9106	1	558.0	75.0%	1	K.AIFAGYK.R	1
*	step01.6712.6712.2	2.398	0.3612	1102.38	1102.1754	1	492.1	81.2%	1	R.DETEFYLGK.R	2
*	step02.12876.12876.2	2.3894	0.261	979.296	979.22156	6	544.1	71.4%	1	R.VMLYPSRI.-	2

U	gi\|4503525\|ref\|NP_003	19	44	21.5%	913	105344	5.7	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]
U	gi\|83700233\|ref\|NP_00	19	44	21.5%	913	105344	5.7	eukaryotic translation initiation factor 3 subunit C [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.250.250.2	4.8905	0.5273	1981.195	1980.1603	1	2720.4	80.0%	2	R.ILADLEDYLNELWEDK.E	2 2
step02.21156.21156.2	5.7088	0.5426	2295.799	2294.4993	1	2211.0	69.4%	4	R.ILADLEDYLNELWEDKEGK.K	2 2
step02.8655.8655.2	2.5008	0.3803	1226.849	1227.3046	1	663.9	72.2%	2	R.DFESHITSYK.Q	2 2
step02.3945.3945.2	5.2706	0.4837	1992.458	1992.9481	1	2192.1	86.7%	2	K.RLDEEEEDNEGGEWER.V	2
step03.11848.11848.2	3.4581	0.1721	1085.797	1085.2822	1	1373.5	93.8%	3	K.KLNEILQAR.G	2 2
step02.8262.8262.2	2.8187	0.2069	957.392	957.1093	1	983.2	92.9%	2	K.LNEILQAR.G	2 2
step06.22277.22277.3	4.3493	0.3356	2748.911	2748.2114	1	896.4	29.0%	2	R.AAQIELLQLLVQIAAENNLGEGVIVK.I	3 3
step04.17589.17589.3	5.8778	0.0987	2978.091	2979.3838	1	1128.1	40.6%	3	R.DLM*LMSHLQDNIQHADPPVQILYNR.T	3 3
step04.16635.16635.3	5.3013	0.1355	2979.418	2979.3838	1	808.2	34.4%	3	R.DLMLM*SHLQDNIQHADPPVQILYNR.T	3 3
step04.16036.16036.3	4.7762	0.3617	2995.541	2995.3833	1	1293.3	39.6%	1	R.DLMLMSHLQDNIQHADPPVQILYNR.T	3 3
step05.15529.15529.2	3.7684	0.4792	1297.515	1296.5579	1	1255.9	85.0%	5	R.TMVQLGICAFR.Q	2 2
step05.14063.14063.2	2.8692	0.5082	1311.864	1312.5573	1	1594.5	85.0%	1	R.TM*VQLGICAFR.Q	2 2
step02.10754.10754.2	4.0902	0.5435	1497.359	1497.5955	1	1736.9	76.9%	2	K.DAHNALLDIQSSGR.A	2 2
step05.15863.15863.2	4.1916	0.4221	1311.616	1311.5988	1	1508.6	86.4%	2	R.AKELLGQGLLLR.S	2 2
step02.16192.16192.2	2.7375	0.376	1112.422	1112.3477	1	1376.8	94.4%	2	K.ELLGQGLLLR.S	2 2
step04.17244.17244.2	2.7399	0.3179	1906.765	1906.1976	1	794.6	50.0%	1	K.MNGKVWDLFPEADKVR.T	2 2
step02.16658.16658.2	3.4906	0.3193	1475.44	1475.6731	1	772.6	72.7%	2	K.VWDLFPEADKVR.T	2 2
step02.17672.17672.3	4.8502	0.3855	2558.38	2557.996	1	981.5	38.1%	3	K.MIINEELMASLDQPTQTVVMHR.T	3 3
step02.12147.12147.2	4.9181	0.4805	1756.143	1755.9508	1	967.8	83.3%	2	R.TEPTAQQNLALQLAEK.L	2 2

Similarities: gi|153791492|ref|NP_0(18:1)

gi|58331185|ref|NP_00

21.5%

339

37499

6.4

T-complex protein 1 subunit eta isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21460.21460.3	5.7507	0.4855	2893.813	2893.196	1	805.9	34.8%	2	R.VHTVEDYQAIVDAEWNILYDKLEK.I	3 3
step02.15311.15311.2	3.2786	0.4694	1566.451	1566.7394	1	2184.6	76.9%	2	K.LPIGDVATQYFADR.D	2 2
step04.14343.14343.2	3.57	0.4617	1155.313	1155.396	1	789.3	88.9%	4	R.SLHDAIMIVR.R	2 2
step03.13142.13142.2	2.8347	0.3201	1171.447	1171.3954	1	643.0	88.9%	2	R.SLHDAIM*IVR.R	2 2
step03.1530.1530.3	4.7909	0.532	2657.69	2657.9954	1	996.5	32.3%	3	R.INALTAASEAACLIVSVDETIKNPR.S	3 3

Similarities: gi|261399875|ref|NP_0(5:0)

gi|10835067|ref|NP_00

21.3%

408

46837

7.1

lupus La protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17555.17555.2	5.2682	0.5599	2072.864	2073.289	1	2966.2	76.7%	5	K.ICHQIEYYFGDFNLPR.D	2
*	step03.17559.17559.3	4.0838	0.4834	2073.032	2073.289	1	2039.8	51.7%	2	K.ICHQIEYYFGDFNLPR.D	3
*	step04.19393.19393.2	4.5016	0.5477	1550.387	1550.7782	1	1154.1	76.9%	4	R.LTTDFNVIVEALSK.S	2
*	step05.12212.12212.2	2.4322	0.2375	2202.141	2203.4377	1	443.6	44.4%	1	R.RSPSKPLPEVTDEYKNDVK.N	2
*	step03.20807.20807.3	4.8762	0.5637	3135.248	3134.509	1	613.8	32.7%	1	K.GFPTDATLDDIKEWLEDKGQVLNIQMR.R	3
*	step03.18287.18287.2	3.5191	0.4122	1384.46	1383.657	1	1445.5	85.0%	3	K.YKETDLLILFK.D	2

gi|186928852|ref|NP_0

21.1%

242

28134

10.0

28S ribosomal protein S7, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14358.14358.3	3.9749	0.3923	2063.694	2064.2822	1	449.3	40.0%	1	R.YSPEFKDPLIDKEYYR.K	3
*	step03.13538.13538.2	2.624	0.3765	1405.282	1405.6892	1	299.9	68.2%	1	R.SLM*IQTLEAVKR.K	2
*	step05.14980.14980.2	3.7699	0.3998	1332.367	1332.5319	1	983.2	80.0%	2	R.NPYTIFHQALK.N	2
*	step06.16785.16785.2	2.9449	0.1835	1487.03	1487.7302	1	784.0	68.2%	2	R.FYQVPVPLPDRR.R	2

gi|4503841|ref|NP_001

21.0%

609

69843

6.6

X-ray repair cross-complementing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.5802.5802.3	5.5314	0.5407	2503.275	2502.409	1	1795.6	41.7%	1	K.TEGDEEAEEEQEENLEASGDYK.Y	3
*	step06.21749.21749.2	2.5992	0.0958	1753.039	1751.8553	5	390.0	38.1%	1	K.YSGRDS#LIFLVDASK.A	2
*	step04.19115.19115.2	3.6903	0.4956	1403.462	1403.6718	1	1061.9	81.8%	3	R.DTGIFLDLMHLK.K	2
*	step06.18811.18811.2	3.4603	0.4452	1399.704	1400.6062	1	1924.3	90.9%	2	K.KPGGFDISLFYR.D	2
*	step03.13964.13964.2	4.2243	0.4227	1808.709	1809.0137	1	678.8	59.4%	4	R.TFNTSTGGLLLPSDTKR.S	2
*	step03.13925.13925.3	3.7982	0.3144	1809.131	1809.0137	1	583.6	43.8%	1	R.TFNTSTGGLLLPSDTKR.S	3
*	step06.19810.19810.2	2.4252	0.2874	2066.68	2067.5437	1	322.7	50.0%	1	R.FDDPGLMLMGFKPLVLLK.K	2
*	step03.411.411.3	4.8506	0.2875	2424.784	2424.7961	1	3270.6	50.0%	1	R.NLEALALDLMEPEQAVDLTLPK.V	3
*	step03.424.424.2	5.411	0.4835	2425.781	2424.7961	1	1191.5	57.1%	1	R.NLEALALDLMEPEQAVDLTLPK.V	2
*	step02.13434.13434.2	2.6996	0.2722	1174.103	1173.3845	1	911.9	83.3%	1	K.KQELLEALTK.H	2

gi|4506619|ref|NP_000

21.0%

157

17779

11.3

60S ribosomal protein L24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13916.13916.2	4.2011	0.2735	1450.633	1449.6908	1	1610.3	90.9%	3	-.MKVELCSFSGYK.I	2
*	step03.12759.12759.2	3.617	0.3207	1465.212	1465.6902	1	1156.3	86.4%	4	-.M*KVELCSFSGYK.I	2
*	step02.13478.13478.2	3.2744	0.3784	967.388	967.1458	1	769.7	92.9%	2	K.VFQFLNAK.C	2
*	step02.13480.13480.1	2.0023	0.2093	967.573	967.1458	1	500.1	71.4%	2	K.VFQFLNAK.C	1
*	step02.14160.14160.1	2.3194	0.2401	1262.872	1262.5016	2	416.6	50.0%	1	R.AITGASLADIMAK.R	1
*	step02.11177.11177.2	5.0732	0.5448	1279.84	1278.501	1	1636.0	83.3%	2	R.AITGASLADIM*AK.R	2

gi|4503471|ref|NP_001

20.8%

462

50141

9.0

elongation factor 1-alpha 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13830.13830.2	2.6931	0.2148	1405.472	1405.5828	1	1172.5	77.3%	2	K.YYVTIIDAPGHR.D	2
	step05.15457.15457.2	3.2726	0.4652	1315.339	1315.5427	1	879.0	86.4%	3	R.EHALLAYTLGVK.Q	2 2
*	step06.19589.19589.2	2.2525	0.1353	2502.784	2503.573	115	66.5	16.7%	1	R.KDGNAS#GT#TLLEALDCILPPTR.P	2
*	step03.19773.19773.3	4.6791	0.5697	3024.112	3023.3813	1	1044.2	28.7%	6	K.DGNASGTTLLEALDCILPPTRPTDKPLR.L	3
	step02.10736.10736.2	2.5074	0.2519	976.397	976.151	1	573.0	92.9%	2	R.LPLQDVYK.I	2 2
	step03.10755.10755.2	3.4523	0.4318	1026.036	1026.2148	1	1126.2	90.0%	4	K.IGGIGTVPVGR.V	2 2
*	step06.18547.18547.2	5.6579	0.5372	2517.17	2516.9817	1	821.8	54.3%	5	R.VETGVLKPGMVVTFAPVNVTTEVK.S	2
*	step04.16831.16831.3	4.6477	0.3588	2517.879	2516.9817	1	1318.2	39.1%	3	R.VETGVLKPGMVVTFAPVNVTTEVK.S	3
*	step05.15712.15712.3	4.4211	0.3631	2532.836	2532.981	1	1135.6	39.1%	3	R.VETGVLKPGM*VVTFAPVNVTTEVK.S	3
*	step04.15849.15849.2	3.7034	0.4542	2532.858	2532.981	1	482.6	43.5%	2	R.VETGVLKPGM*VVTFAPVNVTTEVK.S	2

Similarities: gi|4503475|ref|NP_001(3:7)

U	gi\|224591430\|ref\|NP_0	6	9	20.8%	379	43634	9.6	cell growth-regulating nucleolar protein [Homo sapiens]
U	gi\|8923398\|ref\|NP_060	6	9	20.8%	379	43634	9.6	cell growth-regulating nucleolar protein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17064.17064.2	3.1736	0.2054	1886.791	1887.1293	1	1222.1	80.0%	2	K.VRELLEQISAFDNVPR.K	2
step02.16140.16140.2	2.4981	0.2845	1631.661	1631.8113	1	1112.0	65.4%	1	R.ELLEQISAFDNVPR.K	2
step03.825.825.3	5.0299	0.4415	2857.676	2858.0686	1	552.6	30.2%	1	K.VHNESILDQVWNIFSEASNSEPVNK.E	3
step02.4031.4031.3	3.7218	0.403	2273.672	2272.329	1	732.5	33.0%	1	K.GQEADLEAGGEEVPEANGSAGKR.S	3
step05.12836.12836.2	2.5628	0.1996	1860.311	1861.0504	1	699.5	67.9%	2	K.KVLAQYYTVTDEHHR.S	2
step02.11328.11328.2	2.9748	0.306	1733.514	1732.8774	1	784.3	69.2%	2	K.VLAQYYTVTDEHHR.S	2

U	gi\|195972866\|ref\|NP_0	7	12	20.7%	584	58801	5.2	keratin, type I cytoskeletal 10 [Homo sapiens]
U	gi\|40354192\|ref\|NP_00	7	12	20.7%	584	58827	5.2	keratin 10; cytokeratin 10 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.20394.20396.3	5.5647	0.3602	3054.806	3054.402	1	1370.6	29.8%	4	K.TIDDLKNQILNLTTDNANILLQIDNAR.L	3
step03.17781.17781.3	4.5871	0.1543	2368.378	2368.6326	1	1418.8	35.0%	2	K.NQILNLTTDNANILLQIDNAR.L	3
step02.9657.9657.2	2.2449	0.2058	1235.841	1235.4144	7	323.2	61.1%	1	R.LKYENEVALR.Q	2
step03.786.786.2	3.0793	0.3888	2112.429	2113.3716	1	1100.9	52.9%	1	K.ADLEM*QIESLTEELAYLK.K	2
step02.19618.19618.3	3.9913	0.4346	2874.028	2874.2012	1	1331.6	31.7%	2	R.NVSTGDVNVEMNAAPGVDLTQLLNNMR.S	3
step05.17669.17669.2	2.6409	0.2244	1799.284	1798.074	7	431.3	43.3%	1	R.NVQALEIELQSQLALK.Q	2
step03.314.314.3	4.073	0.392	2749.119	2748.0786	1	569.8	34.1%	1	R.YCVQLSQIQAQISALEEQLQQIR.A	3

gi|187830894|ref|NP_0

20.7%

261

29553

8.7

cellular tumor antigen p53 isoform d [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19626.19626.2	5.1771	0.5253	2069.931	2069.3914	1	820.3	66.7%	5	R.RPILTIITLEDSSGNLLGR.N	2 2 2
step06.18171.18171.2	3.8601	0.3086	1708.666	1708.982	1	1033.3	80.8%	2	K.KKPLDGEYFTLQIR.G	2 2
step06.18067.18067.3	4.6371	0.3345	1708.988	1708.982	1	1912.7	51.9%	2	K.KKPLDGEYFTLQIR.G	3 3
step04.15802.15802.2	2.7069	0.3124	1579.961	1580.8092	1	566.9	66.7%	1	K.KPLDGEYFTLQIR.G	2 2
step02.5894.5894.3	5.4336	0.496	2213.07	2213.391	1	1562.7	38.8%	2	R.ELNEALELKDAQAGKEPGGSR.A	3 3
step02.5908.5908.2	4.8253	0.4586	2213.744	2213.391	1	1283.5	65.0%	2	R.ELNEALELKDAQAGKEPGGSR.A	2 2

Similarities: gi|120407068|ref|NP_0(6:0)
gi|187830823|ref|NP_0(1:5)

U	gi\|157694492\|ref\|NP_0	32	80	20.6%	1328	148854	9.3	myb-binding protein 1A isoform 2 [Homo sapiens]
U	gi\|157694494\|ref\|NP_0	32	80	20.6%	1332	149366	9.3	myb-binding protein 1A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21138.21140.2	4.1173	0.5328	2171.631	2172.3806	1	885.9	62.5%	5	R.EFLDFFWDIAKPEQETR.L	2
step02.11066.11066.1	1.8744	0.431	885.514	886.0743	1	376.5	68.8%	2	R.LITGLGVGR.E	1
step02.11032.11032.2	2.8963	0.2631	886.089	886.0743	1	1225.0	93.8%	2	R.LITGLGVGR.E	2
step05.14537.14537.2	5.0043	0.4595	2050.841	2051.2947	1	1888.3	62.5%	5	K.LLQALAQYQNHLQEQPR.K	2
step05.14530.14530.3	4.9518	0.4635	2051.334	2051.2947	1	1601.9	46.9%	2	K.LLQALAQYQNHLQEQPR.K	3
step06.17460.17460.3	3.5916	0.3573	2180.156	2179.4675	1	834.5	38.2%	1	K.LLQALAQYQNHLQEQPRK.A	3
step02.16256.16256.2	4.3211	0.4263	1302.636	1302.5422	1	1961.5	90.9%	2	R.KALVDILSEVSK.A	2
step04.22.22.3	4.2173	0.4362	2484.449	2484.873	1	1349.7	38.1%	5	K.ADLNIILSSPEQLELFLLAQQK.V	3
step02.21992.21992.2	4.6713	0.5807	2485.934	2484.873	1	1302.0	54.8%	4	K.ADLNIILSSPEQLELFLLAQQK.V	2
step06.17543.17543.2	5.0239	0.4198	1775.71	1774.9989	1	1996.6	80.0%	1	K.KLVGSVNLFSDENVPR.L	2
step06.19525.19525.1	2.0144	0.3531	1222.915	1223.5331	1	270.9	65.0%	1	R.KLPAIALDLLR.L	1
step06.19479.19479.2	3.1954	0.5011	1222.924	1223.5331	1	949.4	95.0%	2	R.KLPAIALDLLR.L	2
step02.18675.18675.2	3.0628	0.2856	1096.636	1095.3602	1	1274.9	94.4%	1	K.LPAIALDLLR.L	2
step05.10814.10816.2	3.0505	0.3587	1217.944	1217.4423	1	1142.4	83.3%	2	R.LALKEDKFPR.F	2
step05.18906.18906.2	4.4536	0.467	1607.031	1606.8652	1	1396.1	90.9%	3	K.MQFWPASYLCFR.L	2
step05.17797.17798.2	3.3602	0.1495	1623.559	1622.8646	1	1186.9	86.4%	2	K.M*QFWPASYLCFR.L	2
step04.16923.16923.1	2.064	0.3472	1109.548	1110.4148	3	408.1	65.0%	2	R.LLGAALPLLTK.E	1
step05.16703.16703.2	3.5498	0.3882	1110.458	1110.4148	1	966.3	85.0%	7	R.LLGAALPLLTK.E	2
step02.11926.11926.2	2.6262	0.4008	1554.941	1554.7968	14	160.1	50.0%	1	K.EQLHLVM*QGDVIR.H	2
step06.24835.24835.2	2.7445	0.2848	1719.403	1719.0219	1	381.1	60.7%	3	R.FLSPPALQGYVAWLR.A	2
step05.14488.14488.3	3.8781	0.1403	1443.28	1443.5912	1	1176.5	56.8%	1	K.HPFSFPLENQAR.E	3
step06.22159.22159.2	3.5441	0.3057	2105.744	2105.3757	1	1035.5	55.6%	3	R.EAVSSAFFSLLQTLSTQFK.Q	2
step03.18690.18690.2	4.1289	0.4403	1228.588	1228.5033	1	1715.3	90.0%	4	R.VLDLVEVLVTK.Q	2
step02.15634.15634.2	2.4985	0.3525	1317.351	1317.5122	1	1038.8	77.3%	1	R.VYSTALSSFLTK.R	2
step05.16024.16024.2	2.7313	0.304	1473.534	1473.6986	3	436.5	54.2%	2	R.VYSTALSSFLTKR.N	2
step06.21537.21537.2	3.65	0.5487	1708.847	1710.0334	1	1028.6	78.6%	7	R.NSPLTVPMFLSLFSR.H	2
step05.20329.20329.2	2.3978	0.2527	1725.076	1726.0328	1	455.3	53.6%	1	R.NSPLTVPM*FLSLFSR.H	2
step05.11168.11170.2	2.8431	0.386	1112.118	1111.3131	1	1118.6	87.5%	3	R.HQACLLLQK.T	2
step04.14689.14689.2	2.2251	0.4648	1305.425	1305.5299	1	829.6	77.8%	1	R.LHDLYWQAMK.T	2
step03.13010.13010.2	3.306	0.3981	1321.383	1321.5293	1	1176.8	83.3%	2	R.LHDLYWQAM*K.T	2
step02.6932.6933.2	2.4046	0.3006	1258.426	1258.4032	1	429.6	77.3%	1	K.EIPSATQSPISK.K	2
step02.10599.10599.1	1.9584	0.3027	814.636	814.9529	1	170.0	64.3%	1	K.SPLSALAR.K	1

U	gi\|21327708\|ref\|NP_63	9	30	20.5%	391	45374	4.5	nucleosome assembly protein 1-like 1 [Homo sapiens]
U	gi\|4758756\|ref\|NP_004	9	30	20.5%	391	45374	4.5	nucleosome assembly protein 1-like 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16013.16013.2	4.6348	0.4388	1860.781	1861.0853	1	1303.3	71.9%	2	R.LDGLVETPTGYIESLPR.V	2
step02.5594.5594.2	3.129	0.3097	1337.341	1337.419	1	1113.8	77.8%	3	K.FYEEVHDLER.K	2 2
step05.15815.15815.2	4.0648	0.4701	1485.616	1485.751	1	1572.9	81.8%	2	R.KYAVLYQPLFDK.R	2
step06.18011.18011.2	4.2361	0.377	1641.696	1641.9374	1	1659.5	87.5%	2	R.KYAVLYQPLFDKR.F	2
step06.18037.18037.3	4.3668	0.3979	1641.798	1641.9374	1	1121.6	60.4%	2	R.KYAVLYQPLFDKR.F	3
step05.15737.15737.2	3.9402	0.461	1514.403	1513.7644	1	1337.2	81.8%	5	K.YAVLYQPLFDKR.F	2
step03.20727.20728.2	2.3167	0.261	1337.415	1337.59	1	312.7	65.0%	1	K.GIPEFWLTVFK.N	2
step06.20797.20799.3	5.5652	0.5126	3424.62	3425.7668	1	462.0	31.2%	6	K.FSDAGQPMSFVLEFHFEPNEYFTNEVLTK.T	3
step03.19400.19400.3	5.5993	0.4434	3440.89	3441.766	1	618.9	35.7%	7	K.FSDAGQPM*SFVLEFHFEPNEYFTNEVLTK.T	3

Similarities: gi|5174613|ref|NP_005(1:8)

gi|88758580|ref|NP_11

20.4%

520

58147

10.3

cyclin-L2 isoform A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.21411.21411.2	2.4774	0.2656	2334.316	2333.7031	8	284.8	28.9%	1	R.LYSGVLITLENCLLPDDKLR.F	2 2
	step02.20699.20699.2	3.9401	0.289	1613.078	1612.9324	1	2113.8	78.6%	2	R.VVGCELIQAAGILLR.L	2 2
	step05.15522.15522.2	4.9983	0.4979	1659.45	1659.9777	1	2881.1	82.1%	2	R.LPQVAMATGQVLFQR.F	2 2
	step05.14150.14150.2	3.9492	0.5236	1676.37	1675.977	1	1222.9	75.0%	1	R.LPQVAM*ATGQVLFQR.F	2 2
	step06.17200.17200.2	3.2502	0.4315	1269.47	1269.4805	1	978.0	77.8%	2	R.IRDVINVFHR.L	2 2
	step05.16382.16382.2	4.1448	0.4571	1755.804	1756.0786	1	895.3	71.4%	2	K.KPVPLLLDQDYVNLK.N	2 2
*	step05.15132.15132.2	4.4411	0.3743	2106.651	2107.2954	1	1546.5	71.9%	2	R.NQHLVQTSWNYMNDSLR.T	2
*	step03.13748.13748.2	3.5385	0.2575	1626.553	1625.8483	1	734.3	61.5%	2	R.KKVDLTHLEGEVEK.R	2

Similarities: gi|88758578|ref|NP_00(6:2)

gi|4504511|ref|NP_001

20.4%

397

44868

7.1

dnaJ homolog subfamily A member 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19996.19996.2	2.8726	0.4276	2325.494	2324.5374	1	419.0	39.1%	2	K.EGGAGGGFGSPMDIFDMFFGGGGR.M	2
*	step03.521.521.3	4.6074	0.1632	2340.565	2340.5369	1	2291.2	39.1%	2	K.EGGAGGGFGSPMDIFDM*FFGGGGR.M	3
*	step05.20201.20201.3	4.0387	0.1192	2131.581	2130.347	1	1089.7	34.7%	1	K.NVVHQLSVTLEDLYNGATR.K	3
*	step02.18723.18723.3	5.6115	0.4234	2722.566	2721.9998	1	2662.7	44.8%	2	K.ITFHGEGDQEPGLEPGDIIIVLDQK.D	3
*	step05.11966.11966.2	3.9002	0.3819	1393.627	1393.6566	1	1401.8	79.2%	5	R.TIVITSHPGQIVK.H	2

U	gi\|4505409\|ref\|NP_002	3	7	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392227\|ref\|NP_00	3	7	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392205\|ref\|NP_00	3	7	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]
U	gi\|66392192\|ref\|NP_00	3	7	20.4%	152	17298	8.4	nucleoside diphosphate kinase B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12349.12349.2	3.0785	0.4421	1346.666	1345.572	2	512.0	59.1%	3	R.TFIAIKPDGVQR.G	2 2 2
step04.13984.13984.2	2.637	0.3513	985.27	985.2058	1	1014.4	87.5%	2	R.GLVGEIIKR.F	2 2 2
step06.17406.17406.2	2.3267	0.2513	1176.426	1176.3918	1	498.0	77.8%	2	K.DRPFFPGLVK.Y	2 2

Similarities: gi|38045913|ref|NP_93(2:1)
gi|66392203|ref|NP_00(3:0)

gi|24234688|ref|NP_00

20.3%

679

73681

6.2

stress-70 protein, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.10020.10020.2	3.999	0.5121	1725.529	1725.8865	1	654.4	67.9%	2	K.RQAVTNPNNTFYATK.R	2
*	step05.17766.17766.3	4.4382	0.522	1554.714	1554.8783	1	2472.7	61.5%	4	K.LYSPSQIGAFVLMK.M	3
*	step06.19245.19245.2	4.3263	0.4728	1555.662	1554.8783	1	1545.1	84.6%	5	K.LYSPSQIGAFVLMK.M	2
*	step05.16536.16536.2	3.423	0.37	1570.613	1570.8777	1	1040.7	76.9%	6	K.LYSPSQIGAFVLM*K.M	2
*	step04.16618.16618.3	4.5901	0.3847	1571.048	1570.8777	1	2541.6	57.7%	4	K.LYSPSQIGAFVLM*K.M	3
*	step02.13918.13918.2	2.5005	0.2989	1646.753	1646.866	1	426.1	50.0%	1	R.VINEPTAAALAYGLDK.S	2
*	step02.16469.16469.2	4.4465	0.4925	2056.554	2057.1633	1	1602.1	69.4%	3	K.STNGDTFLGGEDFDQALLR.H	2
*	step03.17181.17181.2	3.5483	0.445	1362.374	1362.5563	1	2099.6	86.4%	4	R.AQFEGIVTDLIR.R	2
*	step02.12524.12524.2	3.2418	0.392	1292.262	1291.4381	1	1389.5	80.0%	1	K.VQQTVQDLFGR.A	2
*	step06.19482.19482.2	3.0805	0.2072	1594.942	1593.9374	9	348.9	50.0%	4	K.LLGQFTLIGIPPAPR.G	2
*	step02.16365.16365.3	5.6876	0.4661	2143.249	2143.3643	1	2952.1	52.8%	2	K.ERVEAVNMAEGIIHDTETK.M	3
*	step06.15393.15393.2	2.783	0.0839	1875.643	1874.7109	20	270.8	26.6%	2	K.M*AS#EREGSGSSGT#GEQK.E	2

gi|6857818|ref|NP_008

20.2%

178

19344

4.6

nucleoplasmin-3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18599.18599.3	6.5286	0.5775	2356.072	2356.6357	1	2000.3	52.5%	4	R.VPAPVTMDSFFFGCELSGHTR.S	3
*	step06.19709.19709.2	5.4749	0.5715	2357.618	2356.6357	1	1330.0	60.0%	7	R.VPAPVTMDSFFFGCELSGHTR.S	2
*	step04.16751.16751.2	4.116	0.5379	2372.394	2372.635	1	567.2	52.5%	2	R.VPAPVTM*DSFFFGCELSGHTR.S	2
*	step05.16595.16595.3	5.8325	0.5728	2373.964	2372.635	1	1723.0	47.5%	3	R.VPAPVTM*DSFFFGCELSGHTR.S	3
*	step03.13454.13454.2	4.3676	0.5706	1685.43	1685.8655	1	1276.8	82.1%	5	R.NHDHQEIAVPVANLK.L	2
*	step03.13394.13394.3	3.7111	0.314	1686.287	1685.8655	5	672.0	46.4%	2	R.NHDHQEIAVPVANLK.L	3

gi|118402586|ref|NP_0

20.1%

184

20778

5.3

lactoylglutathione lyase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15571.15571.2	4.744	0.486	1792.486	1792.0214	1	1747.1	71.9%	2	R.GFGHIGIAVPDVYSACK.R	2
*	step02.20398.20398.2	5.2965	0.4699	2305.434	2304.5854	1	1378.1	63.2%	1	K.GLAFIQDPDGYWIEILNPNK.M	2

U	gi\|25777711\|ref\|NP_00	3	9	20.0%	160	18063	4.5	S-phase kinase-associated protein 1 isoform a [Homo sapiens]
U	gi\|310129506\|ref\|XP_0	3	9	19.6%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310129504\|ref\|XP_0	3	9	19.0%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310122854\|ref\|XP_0	3	9	19.6%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310122852\|ref\|XP_0	3	9	19.0%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|310110328\|ref\|XP_0	3	9	19.6%	163	18703	4.7	PREDICTED: s-phase kinase-associated protein 1-like isoform 1 [Homo sapiens]
U	gi\|310110326\|ref\|XP_0	3	9	19.0%	168	19300	4.8	PREDICTED: s-phase kinase-associated protein 1-like isoform 2 [Homo sapiens]
U	gi\|25777713\|ref\|NP_73	3	9	19.6%	163	18658	4.5	S-phase kinase-associated protein 1 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.15639.15639.2	2.4279	0.1607	1607.346	1606.7571	5	301.4	50.0%	1	R.TDDIPVWDQEFLK.V	2
step04.1295.1295.3	4.5336	0.3495	2137.431	2137.461	1	1403.4	45.8%	2	K.VDQGTLFELILAANYLDIK.G	3
step06.1250.1250.2	4.4337	0.3598	2137.549	2137.461	1	1266.7	61.1%	6	K.VDQGTLFELILAANYLDIK.G	2

gi|50053795|ref|NP_00

19.8%

611

69151

5.7

eukaryotic translation initiation factor 4B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.1523.1523.3	4.905	0.5767	2923.114	2922.2358	1	783.2	31.2%	7	K.SPPYTAFLGNLPYDVTEESIKEFFR.G	3
*	step02.9368.9368.2	2.605	0.3542	830.051	829.9675	1	1044.5	85.7%	1	R.GLNISAVR.L	2
*	step06.22096.22096.3	5.9247	0.4635	3345.266	3345.6614	1	958.9	32.8%	4	R.LKGFGYAEFEDLDSLLSALSLNEESLGNRR.I	3
*	step03.1916.1917.3	6.1459	0.564	3105.265	3104.33	1	1097.9	33.3%	6	K.GFGYAEFEDLDSLLSALSLNEESLGNRR.I	3
*	step04.11967.11967.2	3.9209	0.5143	1531.909	1532.7262	1	1096.4	66.7%	6	R.AASIFGGAKPVDTAAR.E	2
*	step03.13576.13576.3	4.7207	0.3846	3219.836	3220.4841	1	828.9	29.6%	2	K.SLENETLNKEEDCHSPTSKPPKPDQPLK.V	3
*	step06.15094.15095.2	2.5373	0.2793	1565.71	1564.8763	12	261.5	57.7%	1	K.VMPAPPPKENAWVK.R	2
*	step06.14055.14055.2	2.5761	0.2201	1580.281	1580.8757	5	405.3	57.7%	1	K.VM*PAPPPKENAWVK.R	2

gi|153791492|ref|NP_0

19.7%

914

105473

5.6

eukaryotic translation initiation factor 3 subunit C [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.250.250.2	4.8905	0.5273	1981.195	1980.1603	1	2720.4	80.0%	2	R.ILADLEDYLNELWEDK.E	2 2
step02.21156.21156.2	5.7088	0.5426	2295.799	2294.4993	1	2211.0	69.4%	4	R.ILADLEDYLNELWEDKEGK.K	2 2
step02.8655.8655.2	2.5008	0.3803	1226.849	1227.3046	1	663.9	72.2%	2	R.DFESHITSYK.Q	2 2
step03.11848.11848.2	3.4581	0.1721	1085.797	1085.2822	1	1373.5	93.8%	3	K.KLNEILQAR.G	2 2
step02.8262.8262.2	2.8187	0.2069	957.392	957.1093	1	983.2	92.9%	2	K.LNEILQAR.G	2 2
step06.22277.22277.3	4.3493	0.3356	2748.911	2748.2114	1	896.4	29.0%	2	R.AAQIELLQLLVQIAAENNLGEGVIVK.I	3 3
step04.17589.17589.3	5.8778	0.0987	2978.091	2979.3838	1	1128.1	40.6%	3	R.DLM*LMSHLQDNIQHADPPVQILYNR.T	3 3
step04.16635.16635.3	5.3013	0.1355	2979.418	2979.3838	1	808.2	34.4%	3	R.DLMLM*SHLQDNIQHADPPVQILYNR.T	3 3
step04.16036.16036.3	4.7762	0.3617	2995.541	2995.3833	1	1293.3	39.6%	1	R.DLMLMSHLQDNIQHADPPVQILYNR.T	3 3
step05.15529.15529.2	3.7684	0.4792	1297.515	1296.5579	1	1255.9	85.0%	5	R.TMVQLGICAFR.Q	2 2
step05.14063.14063.2	2.8692	0.5082	1311.864	1312.5573	1	1594.5	85.0%	1	R.TM*VQLGICAFR.Q	2 2
step02.10754.10754.2	4.0902	0.5435	1497.359	1497.5955	1	1736.9	76.9%	2	K.DAHNALLDIQSSGR.A	2 2
step05.15863.15863.2	4.1916	0.4221	1311.616	1311.5988	1	1508.6	86.4%	2	R.AKELLGQGLLLR.S	2 2
step02.16192.16192.2	2.7375	0.376	1112.422	1112.3477	1	1376.8	94.4%	2	K.ELLGQGLLLR.S	2 2
step04.17244.17244.2	2.7399	0.3179	1906.765	1906.1976	1	794.6	50.0%	1	K.MNGKVWDLFPEADKVR.T	2 2
step02.16658.16658.2	3.4906	0.3193	1475.44	1475.6731	1	772.6	72.7%	2	K.VWDLFPEADKVR.T	2 2
step02.17672.17672.3	4.8502	0.3855	2558.38	2557.996	1	981.5	38.1%	3	K.MIINEELMASLDQPTQTVVMHR.T	3 3
step02.12147.12147.2	4.9181	0.4805	1756.143	1755.9508	1	967.8	83.3%	2	R.TEPTAQQNLALQLAEK.L	2 2

Similarities: gi|4503525|ref|NP_003(18:0)

U	gi\|226246671\|ref\|NP_0	4	7	19.7%	142	16006	9.3	40S ribosomal protein S20 isoform 1 [Homo sapiens]
U	gi\|4506697\|ref\|NP_001	4	7	23.5%	119	13373	9.9	40S ribosomal protein S20 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.8572.8572.3	4.2511	0.3568	1649.946	1649.83	4	736.6	42.9%	2	K.DTGKTPVEPEVAIHR.I	3
step02.8270.8270.2	2.8663	0.2676	1248.423	1248.4132	1	1039.5	85.0%	2	K.TPVEPEVAIHR.I	2
step05.14274.14274.2	3.362	0.2023	1507.021	1507.7598	1	1337.5	79.2%	1	K.RLIDLHSPSEIVK.Q	2
step02.12772.12772.2	2.7247	0.3628	1351.568	1351.5734	1	731.8	72.7%	2	R.LIDLHSPSEIVK.Q	2

U	gi\|16332358\|ref\|NP_27	17	41	19.6%	782	91332	5.5	cell division protein kinase 11B isoform 2 [Homo sapiens]
U	gi\|16332372\|ref\|NP_27	17	41	19.8%	771	90047	5.4	cell division protein kinase 11B isoform 9 [Homo sapiens]
U	gi\|16332370\|ref\|NP_27	17	41	19.6%	780	91009	5.4	cell division protein kinase 11B isoform 8 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7116.7116.2	2.7452	0.1501	1089.207	1089.2213	1	784.0	87.5%	1	K.TLDEILQEK.K	2 2
step02.7649.7649.2	2.685	0.4562	1286.31	1286.415	1	983.6	75.0%	1	R.IEEGTYGVVYR.A	2 2 2
step03.17210.17210.2	4.4655	0.4576	1637.52	1637.9241	1	2058.1	87.5%	10	K.IYIVMNYVEHDLK.S	2 2 2
step03.13942.13942.2	2.8657	0.1437	1851.536	1852.2085	1	458.9	56.7%	2	K.SLMETM*KQPFLPGEVK.T	2 2 2
step04.12865.12865.2	2.7164	0.3207	1867.861	1868.2079	6	200.8	50.0%	2	K.SLMETMKQPFLPGEVK.T	2 2 2
step03.16702.16702.2	3.159	0.2484	988.152	988.27313	1	814.3	92.9%	6	K.TLMIQLLR.G	2 2 2
step05.15352.15352.2	4.1422	0.3979	1367.424	1367.6191	1	1848.2	83.3%	4	K.TSNLLLSHAGILK.V	2 2 2
step02.8492.8492.2	2.6917	0.2872	834.663	834.9427	3	731.2	78.6%	2	K.VGDFGLAR.E	2 2 2
step05.17756.17756.2	2.7833	0.5008	1468.839	1468.7236	1	700.8	72.7%	1	K.AYTPVVVTLWYR.A	2 2
step01.9060.9060.2	4.6482	0.1085	1549.469	1548.7035	1	2440.5	84.8%	1	K.AYT#PVVVTLWYR.A	2 2
step02.11798.11798.2	2.928	0.3945	911.862	912.10846	1	684.6	87.5%	1	R.APELLLGAK.E	2 2 2
step04.14447.14447.2	2.4497	0.302	1488.492	1488.7549	1	231.1	62.5%	1	K.IWPGYSELPAVKK.M	2 2
step05.12984.12984.2	3.0434	0.395	1638.092	1637.8444	1	544.3	62.5%	2	K.KMTFSEHPYNNLR.K	2 2 2
step02.11694.11694.2	3.3106	0.4156	1509.269	1509.6714	1	533.2	68.2%	3	K.MTFSEHPYNNLR.K	2 2 2
step05.12398.12398.2	2.8481	0.3606	1637.64	1637.8444	1	557.1	66.7%	1	K.MTFSEHPYNNLRK.R	2 2 2
step02.16942.16942.2	3.4903	0.1715	1656.562	1656.8843	1	1579.5	75.0%	1	R.FGALLSDQGFDLMNK.F	2 2 2
step02.12212.12212.2	3.9094	0.3739	1565.825	1565.7114	1	1231.7	83.3%	2	R.ISAEDGLKHEYFR.E	2 2 2

Similarities: gi|16332360|ref|NP_27(16:1)
gi|148763345|ref|NP_2(14:3)

U	gi\|4506005\|ref\|NP_002	5	7	19.6%	327	37187	6.2	serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform 1 [Homo sapiens]
U	gi\|46249376\|ref\|NP_99	5	7	19.6%	327	37187	6.2	serine/threonine-protein phosphatase PP1-beta catalytic subunit isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21502.21502.2	4.5761	0.4246	1955.422	1954.3386	1	884.4	59.4%	2	R.EIFLSQPILLELEAPLK.I	2 2
step06.19186.19186.2	2.2707	0.1316	1440.518	1440.7135	3	515.2	65.0%	1	K.IKYPENFFLLR.G	2 2 2
step05.17682.17682.3	4.3279	0.3395	1441.215	1440.7135	1	1284.4	62.5%	2	K.IKYPENFFLLR.G	3 3 3
step05.15062.15062.3	3.9873	0.3215	2405.479	2405.7065	1	854.6	35.5%	1	K.IFCCHGGLSPDLQSMEQIRR.I	3 3 3
step06.14926.14926.2	2.4728	0.2509	1762.032	1762.95	68	182.6	40.0%	1	K.YQYGGLNSGRPVTPPR.T	2

Similarities: gi|4506003|ref|NP_002(4:1)
gi|45827798|ref|NP_99(3:2)

U	gi\|156151392\|ref\|NP_0	9	19	19.5%	532	59682	9.2	heterogeneous nuclear ribonucleoprotein R isoform 4 [Homo sapiens]
U	gi\|5031755\|ref\|NP_005	9	19	16.4%	633	70943	8.1	heterogeneous nuclear ribonucleoprotein R isoform 2 [Homo sapiens]
U	gi\|156151396\|ref\|NP_0	9	19	19.4%	535	59953	9.2	heterogeneous nuclear ribonucleoprotein R isoform 3 [Homo sapiens]
U	gi\|156151394\|ref\|NP_0	9	19	16.4%	636	71214	8.1	heterogeneous nuclear ribonucleoprotein R isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15046.15046.3	5.5729	0.3917	2637.386	2636.9397	1	1598.6	42.0%	5	R.KYGGPPPDSVYSGVQPGIGTEVFVGK.I	3
	step02.11841.11841.2	2.6233	0.2739	1262.267	1262.4852	1	981.5	80.0%	1	R.LMMDPLSGQNR.G	2
2	step05.12563.12563.2	2.4919	0.125	1341.226	1340.5073	1	495.0	59.1%	1	K.HLGVCISVANNR.L	2 2 2
	step02.13772.13772.2	3.3045	0.3259	1338.301	1338.4883	1	1138.7	80.0%	1	K.TKENILEEFSK.V	2
	step02.18026.18026.2	3.3736	0.436	1461.519	1461.6398	1	1618.4	87.5%	1	R.NLATTVTEEILEK.S	2
	step03.14934.14934.3	3.763	0.3691	1540.489	1540.7036	1	775.5	56.8%	1	K.LKDYAFVHFEDR.G	3
	step03.14933.14933.2	3.9403	0.3469	1540.561	1540.7036	1	2134.6	86.4%	4	K.LKDYAFVHFEDR.G	2
	step05.15205.15205.2	2.2351	0.2507	1967.523	1967.2161	1	392.6	43.8%	1	K.LKDYAFVHFEDRGAAVK.A	2
	step02.10961.10961.2	3.7186	0.4012	1761.196	1759.855	1	582.2	61.5%	4	R.STAYEDYYYHPPPR.M	2

Similarities: gi|228008396|ref|NP_0(1:8)
gi|228008291|ref|NP_0(1:8)

U	gi\|261399875\|ref\|NP_0	7	15	19.5%	456	50352	7.9	T-complex protein 1 subunit eta isoform c [Homo sapiens]
U	gi\|5453607\|ref\|NP_006	7	15	16.4%	543	59367	7.6	T-complex protein 1 subunit eta isoform a [Homo sapiens]
U	gi\|261399877\|ref\|NP_0	7	15	17.8%	499	54804	7.7	T-complex protein 1 subunit eta isoform d [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.22986.22986.2	3.3466	0.2437	1835.448	1835.286	1	1292.3	60.0%	1	K.MVVDAVMMLDDLLQLK.M	2
step03.1822.1822.2	3.4465	0.0889	1866.901	1867.2848	1	1420.0	63.3%	1	K.MVVDAVMMLDDLLQLK.M	2
step02.21460.21460.3	5.7507	0.4855	2893.813	2893.196	1	805.9	34.8%	2	R.VHTVEDYQAIVDAEWNILYDKLEK.I	3 3
step02.15311.15311.2	3.2786	0.4694	1566.451	1566.7394	1	2184.6	76.9%	2	K.LPIGDVATQYFADR.D	2 2
step04.14343.14343.2	3.57	0.4617	1155.313	1155.396	1	789.3	88.9%	4	R.SLHDAIMIVR.R	2 2
step03.13142.13142.2	2.8347	0.3201	1171.447	1171.3954	1	643.0	88.9%	2	R.SLHDAIM*IVR.R	2 2
step03.1530.1530.3	4.7909	0.532	2657.69	2657.9954	1	996.5	32.3%	3	R.INALTAASEAACLIVSVDETIKNPR.S	3 3

Similarities: gi|58331185|ref|NP_00(5:2)

gi|55770900|ref|NP_06

19.5%

353

41401

9.9

ribosome biogenesis protein BRX1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5484.5484.3	4.4077	0.4711	2452.952	2452.6135	1	611.7	37.5%	2	R.HATAEEVEEEERDRIPGPVCK.G	3
*	step05.16432.16432.2	4.5516	0.3708	1526.473	1526.8047	1	2194.8	87.5%	3	K.FLVQNIHTLAELK.M	2
*	step03.18575.18575.2	3.948	0.4347	1318.564	1317.5586	1	1622.6	85.0%	8	K.ELLIQIFSTPR.Y	2
*	step05.18707.18707.2	5.8281	0.5454	2036.867	2037.2632	1	1439.3	78.1%	7	K.SQPFVDHVFTFTILDNR.I	2
*	step04.18791.18791.3	3.8049	0.3874	2038.438	2037.2632	1	644.4	39.1%	1	K.SQPFVDHVFTFTILDNR.I	3
*	step03.15831.15831.2	2.2405	0.2383	847.18	847.0796	10	554.4	100.0%	1	R.FVLNLIK.I	2

gi|33188463|ref|NP_87

19.4%

396

45835

9.5

28S ribosomal protein S9, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19659.19659.2	2.9674	0.2736	1612.194	1612.896	3	594.3	61.5%	1	R.AIAYLFPSGLFEKR.A	2
*	step06.19179.19179.3	3.5334	0.2626	2285.861	2286.532	1	533.9	34.7%	1	R.AIQWGEDGRPFHYLFYTGK.Q	3
*	step06.19151.19151.2	4.3162	0.423	2287.106	2286.532	1	1205.6	63.9%	3	R.AIQWGEDGRPFHYLFYTGK.Q	2
*	step02.5915.5915.2	4.719	0.4981	1838.505	1838.9901	1	2223.9	76.7%	1	K.LLTSQCGAAEEEFVQR.F	2
*	step03.20124.20124.3	4.6478	0.473	3506.856	3506.9326	1	994.5	29.6%	2	K.VNGIDYQLYFPITQDREQLM*FPFHFVDR.L	3

gi|5453603|ref|NP_006

19.1%

535

57488

6.4

T-complex protein 1 subunit beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.19528.19528.2	4.3542	0.3663	1518.442	1518.8224	1	2587.9	78.6%	5	R.LTSFIGAIAIGDLVK.S	2
*	step02.5360.5360.2	4.8982	0.5073	1657.601	1657.7609	1	1218.4	76.7%	2	R.EALLSSAVDHGSDEVK.F	2
*	step04.15118.15118.2	5.2235	0.4713	1782.653	1783.0428	1	2571.9	83.3%	1	K.FRQDLMNIAGTTLSSK.L	2
*	step05.11899.11899.2	3.4274	0.4745	1131.091	1131.2631	1	1140.5	93.8%	5	K.HGINCFINR.Q	2
*	step02.17399.17399.2	2.5835	0.1229	2098.196	2098.3848	1	357.7	42.1%	1	R.LALVTGGEIASTFDHPELVK.L	2
*	step02.5120.5120.2	3.7315	0.4113	1331.298	1331.4143	1	1001.3	77.3%	1	R.GATQQILDEAER.S	2
*	step05.17486.17486.3	3.7286	0.0904	1555.783	1555.7946	2	1326.6	50.0%	1	R.SLHDALCVLAQTVK.D	3
*	step04.17549.17549.2	4.4014	0.5164	1556.198	1555.7946	1	1631.6	80.8%	1	R.SLHDALCVLAQTVK.D	2

gi|47524167|ref|NP_99

19.1%

8804

4.1

60S acidic ribosomal protein P1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.8118.8118.2	3.2549	0.2034	2030.329	2030.9481	1	1152.1	56.2%	1	K.KEESEES#DDDMGFGLFD.-	2 2 2
step01.7488.7488.2	4.1759	0.2032	2046.9	2046.9475	1	1650.9	70.8%	2	K.KEESEES#DDDM*GFGLFD.-	2 2 2
step01.7730.7730.2	4.0451	0.5351	2109.988	2110.928	1	1090.9	54.7%	2	K.KEES#EES#DDDMGFGLFD.-	2 2 2
step01.6956.6956.2	4.1889	0.454	2126.175	2126.9275	1	791.9	57.8%	2	K.KEES#EES#DDDM*GFGLFD.-	2 2 2

Similarities: gi|4506671|ref|NP_000(4:0)
gi|4506669|ref|NP_000(4:0)

gi|7705612|ref|NP_057

19.0%

195

21452

8.2

3'-5' exoribonuclease CSL4 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18217.18217.2	4.3741	0.4033	1601.153	1600.8573	1	1613.3	84.6%	2	R.HGYIFSSLAGCLM*K.S	2
*	step06.17932.17932.2	3.8869	0.5093	1357.516	1357.6893	1	1561.1	77.3%	1	K.VHILYVGSMPLK.N	2
*	step06.16799.16799.2	4.0657	0.5041	1373.371	1373.6887	1	1609.0	77.3%	2	K.VHILYVGSM*PLK.N	2
*	step04.13846.13846.2	3.1984	0.2229	1204.723	1203.4156	1	1297.2	80.0%	4	K.SFRPGDIVLAK.V	2

gi|48762932|ref|NP_00

18.8%

548

59621

5.6

T-complex protein 1 subunit theta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13662.13662.2	2.9145	0.424	962.887	963.17896	1	822.2	93.8%	4	K.APGFAQMLK.E	2
*	step04.10204.10204.2	2.2369	0.2934	978.702	979.1784	1	801.8	81.2%	1	K.APGFAQM*LK.E	2
*	step06.16947.16947.2	4.5603	0.3916	1740.423	1741.0126	1	1242.7	75.0%	2	R.KAHEILPNLVCCSAK.N	2
*	step03.13941.13941.2	3.3284	0.3286	1612.633	1612.8396	1	726.6	65.4%	4	K.AHEILPNLVCCSAK.N	2
*	step05.16826.16826.3	3.95	0.4204	2474.62	2474.7502	4	889.9	33.3%	2	K.LIAQACVSIFPDSGHFNVDNIR.V	3
*	step02.7694.7694.2	4.025	0.5045	1372.757	1373.5375	1	1863.6	78.6%	2	K.AIADTGANVVVTGGK.V	2
*	step02.10412.10412.1	1.8441	0.1506	1356.539	1355.562	180	154.4	34.6%	1	R.LVPGGGATEIELAK.Q	1
*	step03.20496.20496.3	4.8214	0.4488	2992.145	2991.4028	1	1610.2	32.4%	1	K.NVGLDIEAEVPAVKDM*LEAGILDTYLGK.Y	3

U	gi\|31563378\|ref\|NP_85	4	8	18.8%	245	26599	4.7	eukaryotic translation initiation factor 6 isoform a [Homo sapiens]
U	gi\|4504771\|ref\|NP_002	4	8	18.8%	245	26599	4.7	eukaryotic translation initiation factor 6 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.10877.10877.2	3.3242	0.3819	1647.462	1647.7545	1	966.3	65.4%	1	R.ASFENNCEIGCFAK.L	2 2
step04.14344.14344.3	5.2838	0.563	2086.175	2086.2974	1	2190.3	52.9%	3	R.HGLLVPNNTTDQELQHIR.N	3
step04.14369.14369.2	4.9782	0.5757	2086.697	2086.2974	1	986.7	73.5%	2	R.HGLLVPNNTTDQELQHIR.N	2
step02.8189.8189.2	3.7309	0.4014	1519.46	1519.706	1	1279.0	84.6%	2	K.LNEAQPSTIATSMR.D	2 2

Similarities: gi|31563374|ref|NP_85(2:2)

gi|186928854|ref|NP_0

18.7%

395

45319

9.3

28S ribosomal protein S31, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.814.814.2	3.8205	0.4225	2340.685	2341.6423	1	2002.2	63.6%	1	R.IEPLSPELVAAASAVADSLPFDK.Q	2
*	step06.19483.19483.2	3.8226	0.4126	1440.446	1439.7723	1	1200.8	81.8%	4	K.RLNIFDMMAVTK.E	2
*	step04.18810.18810.3	4.7295	0.4983	3238.197	3237.435	1	901.2	37.5%	5	K.LWEFPINNEAGFDDDGSEFHEHIFLEK.H	3
*	step05.15166.15166.2	4.0712	0.3983	1422.312	1422.6686	1	1555.0	90.9%	2	R.HFMELVTCGLSK.N	2
*	step03.13134.13134.2	4.2024	0.5744	1439.471	1438.668	1	1667.3	86.4%	2	R.HFM*ELVTCGLSK.N	2

gi|12056465|ref|NP_00

18.7%

321

33784

10.2

rRNA 2'-O-methyltransferase fibrillarin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5248.5248.2	3.0505	0.4265	1511.462	1511.6157	1	1301.9	70.8%	2	R.VSISEGDDKIEYR.A	2
*	step06.19947.19947.3	8.0996	0.4464	3418.957	3418.8003	1	4250.1	41.4%	4	K.VLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHR.S	3
*	step06.14986.14986.3	3.7032	0.1389	1534.213	1534.7869	1	1393.2	51.9%	2	R.DHAVVVGVYRPPPK.V	3
*	step06.14923.14923.2	4.4134	0.4346	1534.393	1534.7869	1	1765.5	84.6%	2	R.DHAVVVGVYRPPPK.V	2

gi|66392203|ref|NP_00

18.7%

267

30137

8.9

nucleoside diphosphate kinase B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12349.12349.2	3.0785	0.4421	1346.666	1345.572	2	512.0	59.1%	6	R.TFIAIKPDGVQR.G	2 2 2
step04.13984.13984.2	2.637	0.3513	985.27	985.2058	1	1014.4	87.5%	4	R.GLVGEIIKR.F	2 2 2
step05.17077.17077.2	2.3983	0.236	2149.301	2149.5217	6	179.0	36.1%	1	K.YMHSGPVVAMVWEGLNVVK.T	2 2
step06.17406.17406.2	2.3267	0.2513	1176.426	1176.3918	1	498.0	77.8%	2	K.DRPFFPGLVK.Y	2 2

Similarities: gi|38045913|ref|NP_93(3:1)
gi|4505409|ref|NP_002(3:1)

gi|224586884|ref|NP_0

18.5%

303

31947

9.7

DNA-binding protein A isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step01.6190.6190.2	2.251	0.3592	941.774	941.0253	1	1079.0	92.9%	1	R.NGYGFINR.N	2 2 2 2
step03.12030.12030.2	3.8653	0.3473	1873.488	1874.0874	1	975.4	66.7%	2	R.NDTKEDVFVHQTAIKK.N	2 2 2
step02.8592.8592.2	3.084	0.4298	1288.206	1287.4463	1	478.1	85.0%	2	K.EDVFVHQTAIK.K	2 2 2 2
step01.7107.7107.2	4.9136	0.5241	1796.872	1796.8671	1	1526.7	71.9%	8	R.SVGDGETVEFDVVEGEK.G	2 2 2 2
step02.7802.7802.2	2.3855	0.1267	1560.184	1560.6964	1	429.6	60.7%	1	K.DGVPEGAQLQGPVHR.N	2 2

Similarities: gi|34098946|ref|NP_00(4:1)
gi|224586882|ref|NP_0(5:0)
gi|156415990|ref|NP_0(3:2)

gi|124256496|ref|NP_0

101

18.4%

641

70375

6.0

heat shock 70 kDa protein 1-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.1400.1400.2	3.8819	0.5418	1489.123	1488.5806	1	1079.7	79.2%	26	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
*	step02.9039.9039.2	4.5352	0.4679	1694.657	1693.863	1	1472.2	71.4%	3	K.NQVAM*NPQNTVFDAK.R	2
	step02.16967.16967.3	4.1423	0.3623	1615.796	1615.8721	1	1452.8	57.7%	1	K.AFYPEEISSMVLTK.L	3 3
	step02.1703.1703.2	4.4808	0.4986	1616.731	1615.8721	1	1233.0	80.8%	12	K.AFYPEEISSMVLTK.L	2 2
	step02.2063.2063.2	3.1299	0.3321	1632.463	1631.8715	1	1201.3	76.9%	5	K.AFYPEEISSM*VLTK.L	2 2
	step03.14912.14912.2	4.2578	0.2973	1198.729	1198.3973	1	1850.6	90.9%	5	K.DAGVIAGLNVLR.I	2 2
	step02.14462.14462.1	2.6782	0.4503	1198.78	1198.3973	1	324.5	63.6%	4	K.DAGVIAGLNVLR.I	1 1
	step02.4887.4887.2	3.6188	0.4887	1676.423	1676.6827	1	1340.6	73.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2 2
*2	step03.13631.13631.1	2.2413	0.2892	1466.842	1466.7108	1	169.3	65.4%	2	K.AKIHDIVLVGGSTR.I	1 1
*2	step05.13229.13229.2	4.6982	0.4516	1467.576	1466.7108	1	2213.2	84.6%	26	K.AKIHDIVLVGGSTR.I	2 2
	step04.19116.19116.3	4.8016	0.5688	2305.567	2305.5935	1	2844.9	44.3%	4	K.SINPDEAVAYGAAVQAAILMGDK.S	3 3
	step02.19703.19703.2	5.5638	0.5639	2305.665	2305.5935	1	2587.7	63.6%	4	K.SINPDEAVAYGAAVQAAILMGDK.S	2 2
	step02.18429.18429.2	3.628	0.4501	2320.913	2321.593	1	1538.4	54.5%	1	K.SINPDEAVAYGAAVQAAILM*GDK.S	2 2
	step02.13361.13361.1	2.3909	0.337	1287.612	1288.4545	1	244.3	70.0%	2	K.NALESYAFNMK.S	1 1
	step02.13313.13313.2	2.4109	0.3241	1287.777	1288.4545	1	1298.1	80.0%	2	K.NALESYAFNMK.S	2 2
	step02.11378.11378.2	3.3467	0.4532	1304.15	1304.4539	1	1634.6	85.0%	3	K.NALESYAFNM*K.S	2 2

Similarities: gi|167466173|ref|NP_0(15:1)
gi|24234686|ref|NP_69(1:15)
gi|5729877|ref|NP_006(1:15)
gi|34419635|ref|NP_00(2:14)
gi|13676857|ref|NP_06(1:15)

gi|19923403|ref|NP_05

18.4%

293

32789

7.5

exosome complex exonuclease RRP4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.1528.1528.3	3.5537	0.4567	2849.159	2848.117	1	582.0	26.9%	1	R.GFLQEGDLISAEVQAVFSDGAVSLHTR.S	3
*	step03.14350.14350.2	4.1233	0.4924	1524.268	1524.8302	1	2184.2	78.6%	2	K.LGQGVLVQVSPSLVK.R	2
*	step06.17994.17994.2	3.2569	0.3845	1473.678	1473.74	1	900.2	77.3%	2	R.LRNCIISLVTQR.M	2

gi|4506707|ref|NP_001

18.4%

125

13742

10.1

40S ribosomal protein S25 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15680.15682.2	3.7003	0.3243	1574.589	1574.8492	1	1097.4	79.2%	1	K.VRDKLNNLVLFDK.A	2
*	step02.14147.14147.2	3.3662	0.2952	1319.216	1319.5314	1	1163.5	85.0%	2	R.DKLNNLVLFDK.A	2
*	step02.13806.13806.2	3.6146	0.3381	1076.333	1076.2706	1	1063.1	87.5%	1	K.LNNLVLFDK.A	2
*	step02.9867.9867.1	2.125	0.3483	1084.8	1085.279	2	216.7	61.1%	1	K.LITPAVVSER.L	1

U	gi\|215599015\|ref\|NP_0	5	8	18.3%	509	57033	9.5	H/ACA ribonucleoprotein complex subunit 4 isoform 2 [Homo sapiens]
U	gi\|4503337\|ref\|NP_001	5	8	18.1%	514	57674	9.4	H/ACA ribonucleoprotein complex subunit 4 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17976.17978.3	4.7656	0.4026	2768.209	2768.0686	1	1490.5	38.0%	1	R.KSLPEEDVAEIQHAEEFLIKPESK.V	3
step05.17366.17366.2	3.9104	0.3718	1613.181	1612.9375	1	975.3	61.5%	1	K.VAKLDTSQWPLLLK.N	2
step06.18646.18646.3	6.1379	0.4667	2468.778	2468.7522	1	2514.0	45.2%	3	R.TGFINLDKPSNPSSHEVVAWIR.R	3
step03.10299.10299.2	3.8112	0.466	1396.329	1396.5343	1	1780.2	87.5%	2	R.LHNAIEGGTQLSR.A	2
step05.19132.19132.2	3.4947	0.2576	2111.347	2110.528	1	626.8	44.7%	1	R.ALETLTGALFQRPPLIAAVK.R	2

gi|15011936|ref|NP_00

18.3%

115

13015

11.0

40S ribosomal protein S26 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7619.7619.1	1.9914	0.3408	942.459	943.08264	26	107.7	56.2%	2	R.NIVEAAAVR.D	1
*	step05.12617.12617.2	3.0452	0.4053	1475.255	1475.6615	1	560.9	63.6%	1	K.LHYCVSCAIHSK.V	2

U	gi\|270265835\|ref\|NP_0	27	77	18.0%	1782	199748	6.0	cullin-7 isoform 1 [Homo sapiens]
U	gi\|41872646\|ref\|NP_05	27	77	18.9%	1698	191159	5.9	cullin-7 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15442.15442.2	5.2254	0.5479	1747.238	1748.0183	1	2331.6	76.7%	2	R.VPLGPGLHAYPDELIR.Q	2
step05.15593.15593.3	4.5876	0.5053	1748.313	1748.0183	1	1326.0	50.0%	2	R.VPLGPGLHAYPDELIR.Q	3
step04.16434.16434.2	3.6638	0.38	1228.291	1228.4885	1	1359.1	83.3%	3	K.AEHILLWMSK.D	2
step06.20865.20865.2	5.9701	0.4256	2031.833	2032.4164	1	2426.0	71.9%	7	R.VLDLLMHMLSSPDYQIR.W	2
step05.20513.20513.3	4.2433	0.4452	2033.791	2032.4164	1	1283.6	46.9%	2	R.VLDLLMHMLSSPDYQIR.W	3
step06.20051.20051.2	4.9008	0.1507	2048.824	2048.4158	1	1078.3	68.8%	3	R.VLDLLM*HMLSSPDYQIR.W	2
step06.17494.17494.2	2.6643	0.2885	962.281	962.21387	1	729.0	92.9%	2	R.VLFSLVKR.Y	2
step05.15812.15814.2	4.6622	0.5589	2767.153	2768.0767	1	1050.3	50.0%	1	R.SPGSIFQPQLADVSPGLPAAQAQPSFR.R	2
step05.15790.15790.3	5.4108	0.4437	2769.166	2768.0767	1	2541.5	40.4%	2	R.SPGSIFQPQLADVSPGLPAAQAQPSFR.R	3
step01.15372.15372.2	2.5785	0.3303	1994.404	1993.0515	1	556.3	53.1%	1	R.M*LDDYEEISAGDEGEFR.Q	2 2
step02.9358.9358.2	2.3948	0.2134	1162.264	1162.3138	2	557.6	75.0%	1	R.DLINCHVYK.K	2
step03.19122.19122.3	4.2939	0.3017	3389.589	3388.726	1	733.6	22.6%	1	K.YGPEALAGNQAYPSLLEAQEDVLLLDAQAQAK.D	3
step02.6850.6850.2	2.4244	0.3342	990.9	991.12256	1	706.6	88.9%	1	R.LVEGYGPAGK.I	2
step06.17829.17829.2	3.3037	0.3888	1209.408	1208.5216	1	733.6	94.4%	1	K.VKPLLLQLQR.Q	2
step05.14088.14088.2	2.3884	0.3241	953.255	953.1638	1	585.0	92.9%	2	R.TLHLTVLR.I	2
step06.329.329.3	4.7392	0.335	2215.689	2215.4966	1	1238.1	38.2%	3	R.SPNTDREVLQELIFFLHR.L	3
step05.14653.14653.2	4.0468	0.5049	1407.749	1407.6434	1	1627.1	90.9%	2	K.HLGKLELAQELR.D	2
step02.14724.14724.2	2.9281	0.276	1071.455	1071.2955	1	1018.9	93.8%	2	R.VILLENLTR.F	2
step05.17746.17746.2	3.0146	0.2868	1074.338	1073.3148	1	484.5	92.9%	7	R.FWPIIQIR.I	2 2
step05.17310.17310.2	2.386	0.3426	1050.113	1050.2366	1	861.1	92.9%	2	K.PTFWPVFR.E	2
step05.12703.12703.2	2.4855	0.207	913.122	913.0566	1	937.3	85.7%	1	R.SLLHLSSR.L	2
step02.17066.17066.3	4.8092	0.4183	2299.483	2299.4775	1	1820.2	47.2%	2	R.YCEHFNILQNSSSELFGPR.A	3
step06.19305.19305.2	5.5862	0.4364	1732.779	1732.0537	1	2626.3	78.1%	16	R.AAFLLALQNGCAGALLK.L	2
step03.9963.9963.2	2.7671	0.455	1478.44	1477.709	1	467.0	62.5%	2	R.LPQQM*LQSLSTSK.E	2
step03.14081.14081.2	4.3315	0.4249	1817.564	1817.079	1	829.3	59.4%	2	R.GPLDLHEQKDIPGGVLK.I	2
step03.16340.16340.2	3.0008	0.3601	1115.158	1115.345	1	1112.1	93.8%	4	R.NLLNCLIVR.I	2
step06.21633.21633.2	3.7911	0.3979	2019.454	2019.2728	1	960.6	50.0%	3	K.GSACSSTDVLSCILHLLGK.G	2

Similarities: gi|24307991|ref|NP_05(2:25)

U	gi\|76150623\|ref\|NP_00	11	29	17.9%	808	88973	9.2	putative ribosomal RNA methyltransferase NOP2 [Homo sapiens]
U	gi\|76150625\|ref\|NP_00	11	29	17.9%	808	88973	9.2	putative ribosomal RNA methyltransferase NOP2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15559.15559.2	2.9395	0.3154	1215.28	1215.3865	1	969.9	85.0%	2	K.KGPQSLFNAPR.G	2
step05.15889.15889.2	3.3955	0.2245	1183.66	1183.4291	1	794.8	83.3%	2	K.RIQDIVGILR.D	2
step04.18780.18780.2	2.94	0.3022	1738.777	1738.9603	1	683.2	53.6%	1	K.DLAIYYSYGDFLLGK.L	2
step02.8542.8542.2	3.1551	0.4011	1222.213	1222.4244	1	1198.6	90.0%	1	R.ILDMCCAPGGK.T	2
step02.5405.5405.2	4.0519	0.4594	1458.36	1458.5593	1	1278.5	80.8%	2	K.NTGVILANDANAER.L	2
step05.13478.13478.2	4.2288	0.4513	1547.7	1546.7097	1	975.9	65.4%	4	R.LGVTNTIISHYDGR.Q	2
step06.18219.18219.2	5.2956	0.5915	1826.468	1826.0696	1	711.3	75.0%	5	R.FYPHTHNMDGFFIAK.F	2
step06.17407.17407.2	3.882	0.5884	1842.262	1842.069	1	549.0	71.4%	2	R.FYPHTHNM*DGFFIAK.F	2
step04.14310.14310.3	4.9658	0.3729	3200.238	3200.5024	1	1224.9	34.5%	2	K.KFSNSIPQSQTGNSETATPTNVDLPQVIPK.S	3
step02.6822.6822.2	2.4876	0.1488	1402.257	1402.5325	19	428.2	50.0%	1	K.GTDTQTPAVLSPSK.T	2
step05.8560.8561.2	3.0404	0.3341	1150.186	1149.3248	1	406.2	70.0%	7	K.GPQPPTVSPIR.S	2

gi|4503515|ref|NP_003

17.9%

352

39930

6.5

eukaryotic translation initiation factor 3 subunit H [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20135.20135.2	2.7237	0.2401	2044.068	2044.3989	1	570.3	50.0%	1	K.ANITFEYMFEEVPIVIK.N	2
*	step05.19835.19835.3	3.6917	0.2223	1726.264	1727.0209	1	1332.1	50.0%	1	K.NSHLINVLMWELEK.K	3
*	step06.20399.20399.2	4.9177	0.4647	1727.056	1727.0209	1	1367.1	80.8%	4	K.NSHLINVLMWELEK.K	2
*	step05.14650.14650.2	5.1532	0.5959	2077.85	2078.3152	1	664.3	47.4%	3	K.SAVADKHELLSLASSNHLGK.N	2
*	step05.14776.14776.3	6.4953	0.571	2078.484	2078.3152	1	2391.0	48.7%	5	K.SAVADKHELLSLASSNHLGK.N	3
*	step01.7725.7725.2	2.7984	0.4663	1443.171	1442.6217	1	1267.3	72.7%	1	K.LFMAQALQEYNN.-	2

gi|21361499|ref|NP_05

17.8%

574

65010

8.6

sentrin-specific protease 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.9012.9012.2	2.5264	0.341	1858.779	1859.0328	1	307.9	44.7%	2	R.LKSGGGFGPDPGSGTTVPAR.R	2
*	step02.7210.7210.2	3.7766	0.4936	1617.355	1617.7017	1	1231.2	67.6%	2	K.SGGGFGPDPGSGTTVPAR.R	2
*	step06.14165.14165.3	4.5034	0.2465	2192.024	2192.3652	1	1124.4	43.4%	1	K.NHLSPQQGGATPQVPSPCCR.F	3
*	step06.14285.14285.2	3.0816	0.3586	2192.952	2192.3652	1	901.3	55.3%	1	K.NHLSPQQGGATPQVPSPCCR.F	2
*	step05.7794.7794.2	3.4521	0.3169	2272.51	2272.3452	1	687.3	52.6%	2	K.NHLS#PQQGGATPQVPSPCCR.F	2
*	step04.8532.8532.3	3.7003	0.2623	2272.825	2272.3452	4	942.1	35.1%	1	K.NHLS#PQQGGATPQVPSPCCR.F	3
*	step02.19770.19770.2	2.8884	0.4527	1416.69	1415.6841	1	780.9	61.5%	1	R.LGLLGALMAEDGVR.G	2
*	step06.19408.19408.2	3.5135	0.4394	1418.402	1418.6661	1	1318.8	77.3%	4	K.GLVLQLIQSYQR.M	2
*	step03.7947.7947.2	2.4181	0.3417	875.892	876.08325	1	614.3	85.7%	2	R.MPGNAMVR.G	2
*	step06.18960.18960.2	3.2321	0.5168	1452.449	1451.6085	1	775.3	80.0%	5	K.VHFFNSFFYDK.L	2
*	step05.15013.15013.2	2.4072	0.2524	1993.33	1992.2441	1	200.5	53.1%	1	K.HLALSQPFSFTQQDM*PK.L	2

gi|30795212|ref|NP_00

17.8%

579

63705

8.9

insulin-like growth factor 2 mRNA-binding protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14000.14000.2	2.7599	0.3285	1058.284	1057.3104	1	405.2	72.2%	4	K.IPVSGPFLVK.T	2
*	step05.12973.12973.3	3.7167	0.4395	1813.029	1813.0903	1	1137.9	50.0%	1	K.IELHGKPIEVEHSVPK.R	3
*	step02.11174.11174.2	3.7224	0.423	2186.986	2186.4338	1	539.3	47.2%	2	K.VAYIPDEM*AAQQNPLQQPR.G	2
*2	step05.19210.19210.2	3.9637	0.5048	1456.455	1456.7975	1	842.2	84.6%	5	R.LLVPTQFVGAIIGK.E	2 2
*2	step05.19195.19195.3	3.8674	0.2859	1457.557	1456.7975	1	1433.4	51.9%	2	R.LLVPTQFVGAIIGK.E	3 3
*	step03.14158.14158.2	2.5896	0.1631	971.222	971.1994	1	732.2	92.9%	1	K.SILEIMHK.E	2
	step02.13334.13334.2	3.4736	0.4403	1431.261	1431.7251	1	936.0	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
*	step06.15036.15036.2	2.7346	0.1557	1552.29	1551.7246	1	723.0	66.7%	1	K.ITGHFYACQVAQR.K	2
*	step03.13084.13084.2	3.188	0.2565	1199.734	1200.4531	1	1697.2	88.9%	1	R.KIQEILTQVK.Q	2

Similarities: gi|56237027|ref|NP_00(1:8)
gi|238624257|ref|NP_0(1:8)
gi|56118219|ref|NP_00(3:6)

gi|310115369|ref|XP_0

17.8%

197

23444

8.3

PREDICTED: protein FAM115A-like isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14678.14678.2	2.7589	0.3681	1220.833	1221.3927	1	645.3	75.0%	2	K.GLWGPVHELGR.N	2 2 2
step03.20884.20884.2	2.8723	0.247	1818.564	1819.0967	1	848.3	64.3%	1	K.NLAPFFEAWAWPIQK.E	2 2 2
step03.12887.12887.2	2.4802	0.2039	1132.394	1132.3577	1	1034.4	81.2%	2	K.LYLLTQM*PH.-	2 2

Similarities: gi|310115367|ref|XP_0(2:1)
gi|7662276|ref|NP_055(3:0)

gi|57863259|ref|NP_00

17.7%

401

43886

7.7

T-complex protein 1 subunit alpha isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.1889.1889.2	2.3612	0.2034	2239.006	2237.647	32	182.9	32.5%	1	K.IIGINGDFFANM*VVDAVLAIK.Y	2 2
step02.12040.12040.2	2.7488	0.2015	1147.384	1147.3489	1	1321.4	83.3%	1	R.YPVNSVNILK.A	2 2
step06.17677.17677.2	3.1782	0.2185	1924.333	1924.231	2	327.8	46.9%	2	K.LGVQVVITDPEKLDQIR.Q	2 2
step05.12872.12872.2	3.328	0.498	1298.851	1298.5104	1	896.4	80.0%	1	R.SLHDALCVVKR.V	2 2
step05.14833.14833.2	3.1091	0.3661	1356.539	1356.5549	1	1281.0	86.4%	1	K.WIGLDLSNGKPR.D	2 2

Similarities: gi|57863257|ref|NP_11(5:0)

gi|224586882|ref|NP_0

17.7%

372

40090

9.8

DNA-binding protein A isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.6190.6190.2	2.251	0.3592	941.774	941.0253	1	1079.0	92.9%	1	R.NGYGFINR.N	2 2 2 2
	step03.12030.12030.2	3.8653	0.3473	1873.488	1874.0874	1	975.4	66.7%	2	R.NDTKEDVFVHQTAIKK.N	2 2 2
	step02.8592.8592.2	3.084	0.4298	1288.206	1287.4463	1	478.1	85.0%	2	K.EDVFVHQTAIK.K	2 2 2 2
	step01.7107.7107.2	4.9136	0.5241	1796.872	1796.8671	1	1526.7	71.9%	8	R.SVGDGETVEFDVVEGEK.G	2 2 2 2
*	step02.11265.11265.3	3.6208	0.3408	2634.008	2633.9226	1	735.3	29.2%	1	R.IQAGEIGEM*KDGVPEGAQLQGPVHR.N	3
	step02.7802.7802.2	2.3855	0.1267	1560.184	1560.6964	1	429.6	60.7%	1	K.DGVPEGAQLQGPVHR.N	2 2

Similarities: gi|34098946|ref|NP_00(4:2)
gi|224586884|ref|NP_0(5:1)
gi|156415990|ref|NP_0(3:3)

U	gi\|45593130\|ref\|NP_05	7	15	17.5%	549	61993	9.2	guanine nucleotide-binding protein-like 3 isoform 1 [Homo sapiens]
U	gi\|45643129\|ref\|NP_99	7	15	17.9%	537	60540	8.8	guanine nucleotide-binding protein-like 3 isoform 2 [Homo sapiens]
U	gi\|45643127\|ref\|NP_99	7	15	17.9%	537	60540	8.8	guanine nucleotide-binding protein-like 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.10041.10041.2	2.6585	0.166	1256.843	1257.4202	2	585.8	68.2%	4	R.KDPGVPNSAPFK.E	2
step06.16996.16996.2	3.1304	0.2828	941.41	941.2361	1	955.1	92.9%	2	K.KLVLILNK.S	2
step05.17425.17425.2	2.2944	0.1174	1815.013	1813.801	38	160.7	30.8%	1	K.ELPT#VVFRAS#T#KPK.D	2
step04.13944.13944.2	3.4752	0.3939	1087.115	1087.2966	1	999.9	80.0%	3	R.VGVIGFPNVGK.S	2
step02.6442.6442.2	2.224	0.0912	1012.832	1013.12976	44	244.0	55.0%	1	K.GGIPNVEGAAK.L	2
step02.14026.14026.2	3.5189	0.3109	1950.2	1950.0991	1	378.4	43.8%	1	K.SGFNLEELEKNNAQSIR.A	2
step04.17073.17073.3	3.8759	0.3279	2426.279	2426.7104	1	1509.6	37.5%	3	K.GPHLANSILFQSSGLTNGIIEEK.D	3

gi|7662645|ref|NP_054

17.4%

258

29396

9.4

28S ribosomal protein S18b, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.7598.7598.2	2.6045	0.3857	1172.067	1172.3468	1	635.3	83.3%	2	K.VVGNPCPICR.D	2
*	step05.15725.15725.3	4.2821	0.4631	1788.443	1788.0425	1	1263.2	51.8%	1	R.DHGLLIYHIPQVEPR.D	3
*	step05.15740.15742.2	5.128	0.4919	1788.508	1788.0425	1	1622.7	82.1%	1	R.DHGLLIYHIPQVEPR.D	2
*	step04.11807.11807.3	5.5887	0.4409	2280.82	2281.5337	1	2575.9	46.1%	1	R.RLYQGHLQEESGPPPESMPK.M	3
*	step05.10600.10600.2	2.9049	0.244	2282.223	2281.5337	1	417.2	42.1%	1	R.RLYQGHLQEESGPPPESMPK.M	2
*	step04.11251.11251.3	5.6945	0.4062	2297.051	2297.5332	1	3404.6	53.9%	4	R.RLYQGHLQEESGPPPESM*PK.M	3

gi|15721937|ref|NP_11

17.4%

167

19015

9.4

28S ribosomal protein S24, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15228.15228.3	6.3704	0.4386	2207.528	2207.3484	1	2393.1	48.7%	2	R.KGWLSLHTGNLDGEDHAAER.T	3
*	step04.15270.15270.2	5.0327	0.4833	2207.711	2207.3484	1	1815.1	71.1%	1	R.KGWLSLHTGNLDGEDHAAER.T	2
*	step05.10093.10093.2	2.3439	0.346	1024.001	1023.21094	1	1164.7	87.5%	2	R.LHLQTVPSK.V	2

U	gi\|237649012\|ref\|NP_0	6	12	17.2%	361	40684	10.0	probable rRNA-processing protein EBP2 isoform 1 [Homo sapiens]
U	gi\|237649015\|ref\|NP_0	6	12	20.3%	306	34852	10.1	probable rRNA-processing protein EBP2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18023.18023.3	3.7847	0.3064	1534.7	1534.8682	1	1626.4	51.8%	2	R.GLLKPGLNVVLEGPK.K	3
step06.17977.17977.2	3.5719	0.5544	1535.627	1534.8682	1	708.5	82.1%	2	R.GLLKPGLNVVLEGPK.K	2
step06.17231.17231.2	4.7209	0.5018	1755.827	1755.0311	1	927.7	67.9%	4	K.VPTKRPTDYFAEMAK.S	2
step02.12738.12738.2	2.5584	0.3594	1329.375	1329.5066	1	1043.4	85.0%	2	K.RPTDYFAEMAK.S	2
step05.15440.15440.2	2.2265	0.1703	1738.543	1737.813	17	255.1	35.4%	1	K.Y#GKKVQT#EVLQKR.Q	2
step02.15597.15597.3	3.8231	0.4613	2164.014	2165.3914	1	1203.2	41.7%	1	K.GFSDKLDFLEGDQKPLAQR.K	3

gi|112293285|ref|NP_0

17.2%

262

29601

7.0

spindlin-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11080.11080.2	2.7002	0.3176	1372.464	1372.573	1	1025.2	66.7%	2	R.ISDAHLADTMIGK.A	2
*	step02.7320.7320.2	3.0312	0.3374	1389.355	1388.5724	1	1039.2	75.0%	2	R.ISDAHLADTM*IGK.A	2
	step06.17863.17863.2	4.727	0.4624	2047.561	2048.4373	1	1615.7	61.8%	1	R.TGMVIHQVEAKPSVYFIK.F	2 2
	step06.17328.17328.3	3.8195	0.4319	2064.664	2064.4365	1	1054.9	42.6%	1	R.TGM*VIHQVEAKPSVYFIK.F	3 3
	step06.17363.17363.2	4.3836	0.49	2064.719	2064.4365	1	644.7	64.7%	1	R.TGM*VIHQVEAKPSVYFIK.F	2 2
	step05.18137.18137.2	3.7155	0.4345	1789.344	1789.9641	1	1390.6	69.2%	1	K.FDDDFHIYVYDLVK.T	2 2 2
	step04.18201.18201.3	3.8998	0.3809	1789.997	1789.9641	1	795.8	48.1%	2	K.FDDDFHIYVYDLVK.T	3 3 3

Similarities: gi|115527078|ref|NP_0(5:2)
gi|117606320|ref|NP_0(2:5)

gi|10047138|ref|NP_06

17.2%

9966

9.9

NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 4-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11721.11721.2	2.6318	0.106	1750.807	1749.9557	1	638.3	45.2%	5	-.MAGASLGARFY#RQIK.R	2
*	step05.10973.10973.2	2.507	0.1307	1766.71	1765.9551	4	228.2	38.1%	1	-.M*AGASLGARFY#RQIK.R	2

gi|20336294|ref|NP_61

17.0%

1194

133938

8.8

putative ATP-dependent RNA helicase DHX30 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11315.11315.2	2.3038	0.3847	1696.865	1697.9746	1	566.9	50.0%	1	R.LPPMCVNPTPGGTISR.A	2
*	step05.8450.8450.2	2.8518	0.393	1714.36	1713.974	1	517.8	56.7%	2	R.LPPM*CVNPTPGGTISR.A	2
	step04.14697.14697.2	2.5518	0.3088	856.09	856.0067	1	940.9	85.7%	2	K.GWGLLGPR.N	2 2
	step05.18918.18918.2	2.8372	0.2708	1995.133	1995.4076	1	387.4	40.6%	2	K.LSTLTLLWPCPM*TFVAK.G	2 2
	step05.18119.18119.2	4.7113	0.5057	2530.743	2530.862	1	1050.6	52.5%	3	R.KIETFLNHYPVESSWIAPELR.L	2 2
	step05.18179.18180.3	5.4802	0.5535	2531.517	2530.862	1	1765.9	43.8%	4	R.KIETFLNHYPVESSWIAPELR.L	3 3
	step02.17541.17541.3	4.0967	0.3731	2584.033	2583.8752	1	1222.6	35.9%	1	K.DSGPLSDPITGKPYVPLLEAEEVR.L	3 3
	step06.21047.21047.2	3.6453	0.3085	1491.875	1490.8088	1	1542.7	69.2%	1	R.GGALLFCTVGILLR.K	2 2
	step04.16429.16429.3	5.6091	0.4285	2473.239	2473.7273	1	1735.5	40.5%	2	R.KLQSNPSLEGVSHVIVDEVHER.D	3 3
	step05.17389.17389.3	4.3022	0.426	2267.882	2266.6438	1	640.5	38.9%	1	K.VPGFM*YPVKEHYLEDILAK.L	3 3
	step05.16522.16522.2	4.1749	0.3761	1900.618	1900.298	1	1598.6	73.3%	2	K.YLILPVHSNIPMMDQK.A	2 2
	step05.14426.14426.2	2.2565	0.1971	1931.877	1932.2968	1	376.5	50.0%	1	K.YLILPVHSNIPMMDQK.A	2 2
	step06.19354.19354.2	3.4447	0.3273	974.388	974.2247	1	1489.0	87.5%	2	K.AIVLAAIFR.C	2 2
	step04.14655.14655.2	3.7302	0.5038	1725.53	1725.8865	1	1180.7	66.7%	2	K.ALLSHDSGSDHLAFVR.A	2 2
	step04.14639.14639.3	3.7491	0.4439	1726.11	1725.8865	1	1665.2	50.0%	2	K.ALLSHDSGSDHLAFVR.A	3 3
	step04.18987.18987.3	5.6019	0.3839	2286.799	2286.5732	1	2589.9	42.5%	4	R.DSSQVHPLAVLLLTDGDVHIR.D	3 3

Similarities: gi|20336290|ref|NP_05(14:2)

gi|5031741|ref|NP_005

17.0%

412

45746

6.5

dnaJ homolog subfamily A member 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.1544.1544.3	5.5763	0.4775	2994.067	2993.2397	1	1718.6	30.2%	6	R.EGSGGGGGMDDIFSHIFGGGLFGFMGNQSR.S	3
*	step03.357.357.3	3.8264	0.3668	3008.593	3009.239	1	612.3	24.1%	1	R.EGSGGGGGMDDIFSHIFGGGLFGFM*GNQSR.S	3
*	step06.21276.21276.3	5.1942	0.3921	3010.43	3009.239	1	1161.3	26.7%	2	R.EGSGGGGGM*DDIFSHIFGGGLFGFMGNQSR.S	3
*	step03.18798.18798.3	3.904	0.3829	2641.072	2641.9546	1	1853.1	34.4%	1	R.ITFTGEADQAPGVEPGDIVLLLQEK.E	3
*	step03.20146.20146.2	5.3431	0.5625	1731.635	1731.0211	1	2099.0	75.0%	7	K.IGLVEALCGFQFTFK.H	2

U	gi\|148763345\|ref\|NP_2	14	38	16.8%	770	90045	5.3	cell division protein kinase 11A isoform 4 [Homo sapiens]
U	gi\|148763347\|ref\|NP_0	14	38	16.5%	780	91018	5.4	cell division protein kinase 11A isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.7116.7116.2	2.7452	0.1501	1089.207	1089.2213	1	784.0	87.5%	1	K.TLDEILQEK.K	2 2
step02.7649.7649.2	2.685	0.4562	1286.31	1286.415	1	983.6	75.0%	1	R.IEEGTYGVVYR.A	2 2 2
step03.17210.17210.2	4.4655	0.4576	1637.52	1637.9241	1	2058.1	87.5%	10	K.IYIVMNYVEHDLK.S	2 2 2
step03.13942.13942.2	2.8657	0.1437	1851.536	1852.2085	1	458.9	56.7%	2	K.SLMETM*KQPFLPGEVK.T	2 2 2
step04.12865.12865.2	2.7164	0.3207	1867.861	1868.2079	6	200.8	50.0%	2	K.SLMETMKQPFLPGEVK.T	2 2 2
step03.16702.16702.2	3.159	0.2484	988.152	988.27313	1	814.3	92.9%	6	K.TLMIQLLR.G	2 2 2
step05.15352.15352.2	4.1422	0.3979	1367.424	1367.6191	1	1848.2	83.3%	4	K.TSNLLLSHAGILK.V	2 2 2
step02.8492.8492.2	2.6917	0.2872	834.663	834.9427	3	731.2	78.6%	2	K.VGDFGLAR.E	2 2 2
step02.11798.11798.2	2.928	0.3945	911.862	912.10846	1	684.6	87.5%	1	R.APELLLGAK.E	2 2 2
step05.12984.12984.2	3.0434	0.395	1638.092	1637.8444	1	544.3	62.5%	2	K.KMTFSEHPYNNLR.K	2 2 2
step02.11694.11694.2	3.3106	0.4156	1509.269	1509.6714	1	533.2	68.2%	3	K.MTFSEHPYNNLR.K	2 2 2
step05.12398.12398.2	2.8481	0.3606	1637.64	1637.8444	1	557.1	66.7%	1	K.MTFSEHPYNNLRK.R	2 2 2
step02.16942.16942.2	3.4903	0.1715	1656.562	1656.8843	1	1579.5	75.0%	1	R.FGALLSDQGFDLMNK.F	2 2 2
step02.12212.12212.2	3.9094	0.3739	1565.825	1565.7114	1	1231.7	83.3%	2	R.ISAEDGLKHEYFR.E	2 2 2

Similarities: gi|16332360|ref|NP_27(13:1)
gi|16332358|ref|NP_27(14:0)

U	gi\|119395750\|ref\|NP_0	9	22	16.8%	644	66039	8.1	keratin, type II cytoskeletal 1 [Homo sapiens]
U	gi\|17318569\|ref\|NP_00	9	22	16.8%	644	66067	8.1	keratin 1; Keratin-1; cytokeratin 1; hair alpha protein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.9348.9350.2	4.3613	0.1817	1476.518	1476.6593	1	1617.5	86.4%	1	R.FLEQQNQVLQTK.W	2 2
step04.19505.19505.3	4.8736	0.439	1995.097	1995.1831	1	1525.6	46.7%	7	R.THNLEPYFESFINNLR.R	3
step03.19506.19506.2	4.4161	0.4605	1995.909	1995.1831	1	777.1	66.7%	8	R.THNLEPYFESFINNLR.R	2
step02.5931.5931.2	3.5147	0.4652	1267.282	1266.3822	1	754.1	80.0%	1	R.TNAENEFVTIK.K	2
step02.6946.6946.2	3.5191	0.1083	1180.102	1180.2925	1	1923.0	94.4%	1	K.YEELQITAGR.H	2
step02.7344.7344.1	1.9981	0.1448	973.56	974.0935	2	249.9	64.3%	1	K.IEISELNR.V	1 1
step02.7275.7275.2	2.2971	0.1417	973.937	974.0935	1	821.6	92.9%	1	K.IEISELNR.V	2 2
step02.13258.13258.2	2.2465	0.1053	1524.321	1524.7675	1	551.8	68.2%	1	R.LLRDYQELMNTK.L	2
step03.9243.9243.3	3.8153	0.498	3313.491	3314.1824	1	679.3	21.7%	1	R.GSYGSGGSSYGSGGGSYGSGGGGGGHGSYGSGSSSGGYR.G	3

Similarities: gi|4557703|ref|NP_000(3:6)

gi|13129110|ref|NP_07

16.7%

342

36724

5.2

methylosome protein 50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14218.14219.2	3.032	0.3481	1374.394	1373.6254	1	735.3	66.7%	1	R.KETPPPLVPPAAR.E	2
*	step03.9974.9974.2	3.4979	0.3151	1453.611	1453.6053	4	514.4	58.3%	5	R.KET#PPPLVPPAAR.E	2
*	step05.14706.14706.2	4.1666	0.265	1723.712	1723.912	1	1716.9	78.1%	3	R.YRSDGALLLGASSLSGR.C	2
*	step05.13448.13448.3	5.8735	0.5152	2958.681	2959.1648	1	1930.6	39.4%	2	R.AHAAQVTCVAASPHKDSVFLSCSEDNR.I	3

gi|4506711|ref|NP_001

16.7%

9461

9.5

40S ribosomal protein S27 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14449.14449.2	3.4694	0.3476	1684.438	1684.9409	1	465.9	57.7%	2	K.RLVQSPNSYFMDVK.C	2 2
	step02.13140.13140.2	3.8483	0.4761	1530.147	1528.7545	1	1075.9	79.2%	3	R.LVQSPNSYFMDVK.C	2 2

Similarities: gi|7705706|ref|NP_057(2:0)

gi|7662316|ref|NP_055

16.5%

1507

169007

5.1

protein VPRBP isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.20428.20428.3	4.7232	0.4406	2982.777	2983.3457	1	1111.2	30.0%	1	K.AELTTLLEQWEKEHGSGQDMVPILTR.M	3 3
*	step02.20108.20108.2	3.5716	0.0806	1962.376	1962.1968	1	826.5	53.1%	1	K.NDDFMNALVNAYVMTSR.E	2
	step05.11472.11472.2	2.3696	0.3132	1391.377	1391.5562	1	464.9	54.2%	1	K.FATEFVAHGGVQK.L	2 2
	step05.11988.11988.2	4.6738	0.5287	1537.413	1536.7563	1	1448.0	76.9%	3	R.TEGGILVHPQPPYK.A	2 2
	step04.17419.17421.2	3.4381	0.4542	1830.939	1831.0509	1	765.8	56.7%	2	K.SALQIIINCVCGPDNR.I	2 2
	step03.17756.17756.2	3.0529	0.3438	986.381	986.2736	1	747.5	93.8%	2	K.VLLSLLSIK.M	2 2
	step05.17528.17530.2	4.3186	0.4548	1693.134	1694.0258	1	2259.8	80.8%	1	K.LPLFSSCQIQQLMK.E	2 2
	step05.14722.14722.3	3.578	0.2078	1627.267	1626.9225	1	824.5	41.7%	1	R.VSGKPLLIGTDVSLAR.L	3 3
	step05.14712.14712.2	3.8809	0.4327	1627.498	1626.9225	1	849.0	70.0%	2	R.VSGKPLLIGTDVSLAR.L	2 2
	step05.20069.20069.2	3.359	0.3048	1571.796	1571.9285	1	670.3	62.5%	4	R.ISFPEKELLLLIR.N	2 2
	step03.14506.14506.3	4.9382	0.3934	2899.927	2900.2136	1	1707.1	36.6%	2	K.EADLPM*TAASHSSAFTPVTAAASPVSLPR.T	3 3
	step05.20564.20564.2	3.4449	0.4385	1953.578	1953.2277	1	491.7	62.5%	2	R.HLPSPPTLDSIITEYLR.E	2 2
	step03.13558.13558.2	2.4312	0.1827	1385.078	1385.6482	1	879.0	81.8%	1	R.FLM*LGTCTGQLK.L	2 2
	step02.22101.22101.2	2.4098	0.1348	2363.335	2363.7178	1	495.5	38.1%	1	R.DGSLLLTSATWSQPLSALWGMK.S	2 2
	step05.16792.16792.2	4.1604	0.4287	1792.404	1793.0591	1	1083.4	75.0%	2	K.LLTLFNPDLANNYKR.N	2 2
	step02.13344.13344.2	3.0456	0.2825	1796.975	1798.0293	1	1475.5	70.0%	1	R.TFNATDYKPIATIDVK.R	2 2

Similarities: gi|284813529|ref|NP_0(15:1)

U	gi\|148470397\|ref\|NP_0	3	4	16.4%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|4826760\|ref\|NP_004	3	4	16.4%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470406\|ref\|NP_0	3	4	16.4%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470404\|ref\|NP_0	3	4	16.4%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470402\|ref\|NP_0	3	4	16.4%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]
U	gi\|148470400\|ref\|NP_0	3	4	16.4%	415	45672	5.6	heterogeneous nuclear ribonucleoprotein F [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.18174.18174.3	5.1628	0.6039	3476.958	3476.686	1	1833.3	29.0%	1	R.MRPGAYSTGYGGYEEYSGLSDGYGFTTDLFGR.D	3
step03.12969.12969.3	4.5252	0.4308	2214.138	2213.3667	1	1238.0	41.7%	1	R.YGDSEFTVQSTTGHCVHMR.G	3
step02.18632.18632.2	4.5569	0.3458	1997.951	1998.1838	1	1436.2	65.6%	2	K.ATENDIYNFFSPLNPVR.V	2 2

Similarities: gi|5031753|ref|NP_005(1:2)

gi|16950603|ref|NP_06

16.4%

323

36844

8.2

28S ribosomal protein S35, mitochondrial isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.15923.15923.3	4.4365	0.3301	2940.498	2941.133	1	1509.4	39.1%	1	K.HCEALKDFCTEWPAALDSDEKCEK.H	3
*	step02.20744.20744.2	3.1705	0.3995	1203.306	1203.4773	1	1018.7	83.3%	2	R.NILETLLQMK.A	2
*	step02.7263.7263.2	4.1364	0.4175	2199.062	2198.33	1	811.1	52.8%	2	K.SVVSLKNEEENENSISQYK.E	2

gi|238859599|ref|NP_0

16.4%

225

25577

9.7

RNA-binding protein 34 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.18651.18652.3	5.5082	0.4056	2314.031	2313.72	1	2010.0	46.2%	3	R.LASLFSSLEPQIQPVYVPVPK.Q	3 3
step05.18528.18528.2	5.2211	0.5522	2314.491	2313.72	1	730.8	50.0%	5	R.LASLFSSLEPQIQPVYVPVPK.Q	2 2
step03.4922.4922.2	4.3304	0.4277	1770.64	1770.876	1	805.6	63.3%	5	R.ESALASADLEEEIHQK.Q	2 2

Similarities: gi|238859597|ref|NP_0(3:0)

gi|295986608|ref|NP_0

16.4%

214

23063

8.8

immunoglobulin lambda-like polypeptide 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21409.21409.2	2.5131	0.146	2212.654	2212.566	1	466.2	36.8%	1	K.ATLVCLISDFYPGAVTVAWK.A	2
*	step03.15994.15994.2	2.4701	0.1454	1750.671	1749.6926	49	199.0	25.0%	1	K.AGVETTKPS#KQS#NNK.Y	2

gi|20127479|ref|NP_00

16.3%

930

103533

6.0

RNA-binding protein 10 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.4070.4071.3	5.4799	0.5234	3113.042	3112.1484	1	1033.4	34.0%	2	R.TEQGEEEEEEEDEEEEEKASNIVMLR.M	3
*	step03.4050.4050.3	3.6762	0.4225	3128.35	3128.148	1	1288.2	33.0%	1	R.TEQGEEEEEEEDEEEEEKASNIVM*LR.M	3
*	step03.13389.13389.3	3.9043	0.4481	2537.826	2538.7827	1	790.3	40.9%	2	R.M*LPQAATEDDIRGQLQSHGVQAR.E	3
	step02.17168.17168.2	3.918	0.4028	1724.883	1725.8849	1	1981.5	82.1%	6	R.GFAFVEFSHLQDATR.W	2 2
	step03.14674.14674.2	5.1893	0.5195	1768.969	1770.0059	1	1838.5	85.7%	4	R.WMEANQHSLNILGQK.V	2 2
	step03.13768.13768.2	4.8132	0.4511	1785.672	1786.0052	1	1011.7	78.6%	2	R.WM*EANQHSLNILGQK.V	2 2
	step02.8675.8675.2	2.6673	0.2399	1191.607	1192.2968	1	727.6	87.5%	2	K.INEDWLCNK.C	2 2
	step02.7972.7972.2	2.4325	0.2335	1329.038	1329.4846	1	455.1	68.2%	1	K.SEAEQKLPLGTR.L	2 2
	step02.8385.8385.2	3.6709	0.4483	1198.066	1198.3542	1	1142.7	90.0%	2	R.LDQQTLPLGGR.E	2 2
	step06.19806.19806.3	3.796	0.3954	2844.78	2845.1812	1	1406.3	31.7%	3	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	3 3
	step05.18914.18914.2	2.7454	0.3877	2845.189	2845.1812	1	247.8	36.5%	1	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	2 2
	step01.11978.11978.2	2.5481	0.1546	1440.019	1439.5496	1	436.8	57.7%	1	R.ESATADAGYAILEK.K	2 2

Similarities: gi|23111018|ref|NP_69(9:3)

U	gi\|120407068\|ref\|NP_0	8	16	16.3%	393	43653	6.8	cellular tumor antigen p53 isoform a [Homo sapiens]
U	gi\|187830777\|ref\|NP_0	8	16	16.3%	393	43653	6.8	cellular tumor antigen p53 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12667.12667.1	1.9522	0.3104	1030.612	1031.19	1	372.2	66.7%	1	R.LGFLHSGTAK.S	1 1
step05.12550.12550.2	2.4953	0.2511	1031.355	1031.19	1	899.5	83.3%	1	R.LGFLHSGTAK.S	2 2
step06.19626.19626.2	5.1771	0.5253	2069.931	2069.3914	1	820.3	66.7%	5	R.RPILTIITLEDSSGNLLGR.N	2 2 2
step06.18171.18171.2	3.8601	0.3086	1708.666	1708.982	1	1033.3	80.8%	2	K.KKPLDGEYFTLQIR.G	2 2
step06.18067.18067.3	4.6371	0.3345	1708.988	1708.982	1	1912.7	51.9%	2	K.KKPLDGEYFTLQIR.G	3 3
step04.15802.15802.2	2.7069	0.3124	1579.961	1580.8092	1	566.9	66.7%	1	K.KPLDGEYFTLQIR.G	2 2
step02.5894.5894.3	5.4336	0.496	2213.07	2213.391	1	1562.7	38.8%	2	R.ELNEALELKDAQAGKEPGGSR.A	3 3
step02.5908.5908.2	4.8253	0.4586	2213.744	2213.391	1	1283.5	65.0%	2	R.ELNEALELKDAQAGKEPGGSR.A	2 2

Similarities: gi|187830894|ref|NP_0(6:2)
gi|187830823|ref|NP_0(3:5)

gi|222352151|ref|NP_0

16.3%

356

37498

7.1

poly(rC)-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15602.15602.2	3.2357	0.3423	1388.756	1389.6648	1	674.6	62.5%	4	R.IITLTGPTNAIFK.A	2
*	step06.557.557.3	4.8433	0.513	3380.656	3380.8389	1	1064.4	27.5%	4	K.AFAMIIDKLEEDINSSMTNSTAASRPPVTLR.L	3
*	step03.12119.12119.2	2.5451	0.4422	1444.82	1443.7074	1	291.3	53.8%	1	R.LVVPATQCGSLIGK.G	2

gi|20336290|ref|NP_05

16.2%

1155

129438

8.5

putative ATP-dependent RNA helicase DHX30 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14697.14697.2	2.5518	0.3088	856.09	856.0067	1	940.9	85.7%	2	K.GWGLLGPR.N	2 2
step05.18918.18918.2	2.8372	0.2708	1995.133	1995.4076	1	387.4	40.6%	2	K.LSTLTLLWPCPM*TFVAK.G	2 2
step05.18119.18119.2	4.7113	0.5057	2530.743	2530.862	1	1050.6	52.5%	3	R.KIETFLNHYPVESSWIAPELR.L	2 2
step05.18179.18180.3	5.4802	0.5535	2531.517	2530.862	1	1765.9	43.8%	4	R.KIETFLNHYPVESSWIAPELR.L	3 3
step02.17541.17541.3	4.0967	0.3731	2584.033	2583.8752	1	1222.6	35.9%	1	K.DSGPLSDPITGKPYVPLLEAEEVR.L	3 3
step06.21047.21047.2	3.6453	0.3085	1491.875	1490.8088	1	1542.7	69.2%	1	R.GGALLFCTVGILLR.K	2 2
step04.16429.16429.3	5.6091	0.4285	2473.239	2473.7273	1	1735.5	40.5%	2	R.KLQSNPSLEGVSHVIVDEVHER.D	3 3
step05.17389.17389.3	4.3022	0.426	2267.882	2266.6438	1	640.5	38.9%	1	K.VPGFM*YPVKEHYLEDILAK.L	3 3
step05.16522.16522.2	4.1749	0.3761	1900.618	1900.298	1	1598.6	73.3%	2	K.YLILPVHSNIPMMDQK.A	2 2
step05.14426.14426.2	2.2565	0.1971	1931.877	1932.2968	1	376.5	50.0%	1	K.YLILPVHSNIPMMDQK.A	2 2
step06.19354.19354.2	3.4447	0.3273	974.388	974.2247	1	1489.0	87.5%	2	K.AIVLAAIFR.C	2 2
step04.14655.14655.2	3.7302	0.5038	1725.53	1725.8865	1	1180.7	66.7%	2	K.ALLSHDSGSDHLAFVR.A	2 2
step04.14639.14639.3	3.7491	0.4439	1726.11	1725.8865	1	1665.2	50.0%	2	K.ALLSHDSGSDHLAFVR.A	3 3
step04.18987.18987.3	5.6019	0.3839	2286.799	2286.5732	1	2589.9	42.5%	4	R.DSSQVHPLAVLLLTDGDVHIR.D	3 3

Similarities: gi|20336294|ref|NP_61(14:0)

gi|16554611|ref|NP_11

16.0%

257

29842

10.5

28S ribosomal protein S15, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13316.13316.2	2.9279	0.3443	1147.311	1147.4138	1	912.6	83.3%	2	R.LLSLEMANKK.E	2
*	step02.1836.1836.2	2.9118	0.0895	1864.803	1864.2035	7	204.5	43.6%	1	R.YLLM*S#IDQRKKMLK.N	2
*	step06.20716.20716.2	3.1508	0.3175	2149.501	2149.4685	1	526.4	53.1%	1	K.ICWGLGIEYTFPPLYYR.R	2

gi|228008396|ref|NP_0

15.9%

464

52046

9.2

heterogeneous nuclear ribonucleoprotein Q isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14337.14337.3	5.4963	0.443	2695.371	2695.964	1	1764.1	40.0%	2	R.KYGGPPPDSVYSGQQPSVGTEIFVGK.I	3 3
	step02.9030.9030.2	2.7276	0.4078	1293.475	1293.5392	1	1281.4	80.0%	1	R.LMMDPLTGLNR.G	2 2
2	step05.12563.12563.2	2.4919	0.125	1341.226	1340.5073	1	495.0	59.1%	1	K.HIGVCISVANNR.L	2 2 2
	step02.16355.16355.2	3.0308	0.4472	1475.095	1474.6385	1	1259.4	79.2%	1	R.NLANTVTEEILEK.A	2 2
	step04.15509.15509.2	3.7029	0.4629	1555.072	1554.7302	1	1285.5	81.8%	2	K.LKDYAFIHFDER.D	2 2

Similarities: gi|156151392|ref|NP_0(1:4)
gi|228008291|ref|NP_0(5:0)

gi|7705805|ref|NP_057

15.9%

296

33249

9.3

28S ribosomal protein S2, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15612.15612.2	4.4587	0.4359	1802.815	1802.0659	1	1203.7	71.4%	4	K.ILNEPLKHSDFFNVK.E	2
*	step06.18412.18412.2	2.7332	0.3903	919.062	919.1458	1	1151.3	85.7%	2	K.GIILFISR.N	2
*	step04.11593.11593.3	3.6741	0.2669	2454.829	2455.6492	11	431.1	34.8%	1	R.LQGQKEPGDQGPAHPPGADMSHSL.-	3
*	step04.5208.5208.2	2.8528	0.3769	2471.154	2471.6487	1	392.4	41.3%	1	R.LQGQKEPGDQGPAHPPGADM*SHSL.-	2

gi|21450814|ref|NP_65

15.8%

404

43395

4.9

hypothetical protein LOC147339 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.4071.4071.3	4.2538	0.2189	2421.873	2422.4995	1	1210.9	40.5%	2	K.ASEQETAKEEDGSVELESQVQK.D	3 3
step02.1014.1014.2	3.5024	0.4682	2196.054	2195.5376	1	680.0	42.1%	2	K.DGVADSTVISSMPCLLMELR.R	2 2
step02.12309.12309.2	2.6033	0.3663	1148.245	1148.2937	1	850.8	70.0%	1	R.GGVIQSVSSWK.H	2 2
step03.7638.7638.2	2.5277	0.4727	1193.41	1193.2513	1	401.1	65.0%	1	K.HGSGTQYVSTR.Q	2 2

Similarities: gi|56549656|ref|NP_00(4:0)

gi|45238849|ref|NP_11

15.7%

631

70031

9.7

polyadenylate-binding protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14659.14659.1	1.91	0.2521	1157.711	1158.3749	1	259.3	65.0%	1	K.FSPAGPILSIR.I	1 1 1 1
	step05.14614.14614.2	2.2341	0.3204	1158.005	1158.3749	1	574.1	90.0%	2	K.FSPAGPILSIR.I	2 2 2 2
	step03.11210.11210.2	2.3083	0.1952	819.226	818.98315	2	516.1	92.9%	1	K.FGPALSVK.V	2 2
	step02.15089.15089.2	4.1756	0.5202	1664.202	1663.8021	1	1286.0	67.9%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2
	step06.17397.17397.2	4.0049	0.4878	1543.655	1543.8783	1	1093.2	84.6%	3	R.IVATKPLYVALAQR.K	2 2
	step06.17409.17409.3	3.7209	0.428	1543.911	1543.8783	1	895.1	53.8%	2	R.IVATKPLYVALAQR.K	3 3
*	step04.18965.18965.2	2.2084	0.1354	2195.377	2194.2048	95	146.0	16.8%	1	R.PAAAAAAAAT#PAVRT#VPRY#K.Y	2
	step06.18306.18306.2	3.8561	0.4244	1654.508	1654.0131	1	1256.1	78.6%	2	R.LFPLIQAM*HPTLAGK.I	2 2
	step03.13707.13707.2	5.6239	0.5766	1695.035	1694.9138	1	2754.4	83.3%	4	R.SKVDEAVAVLQAHQAK.E	2 2
	step04.13781.13781.3	4.878	0.5105	1695.267	1694.9138	1	1963.7	60.0%	2	R.SKVDEAVAVLQAHQAK.E	3 3

Similarities: gi|46367787|ref|NP_00(9:1)
gi|208431833|ref|NP_0(1:9)
gi|185135971|ref|NP_0(3:7)
gi|109948285|ref|NP_0(2:8)

gi|7657198|ref|NP_055

15.7%

313

35236

10.0

probable dimethyladenosine transferase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18240.18240.2	4.0034	0.4012	1744.812	1745.0394	1	708.3	56.2%	1	K.SAGGLMFNTGIGQHILK.N	2
*	step04.16491.16491.3	3.6086	0.2653	2208.965	2209.4807	6	625.6	34.7%	1	R.IHCSVHNIIIPEDFSIADK.I	3
*	step04.16507.16507.2	4.2444	0.5591	2209.138	2209.4807	1	967.7	61.1%	1	R.IHCSVHNIIIPEDFSIADK.I	2
*	step04.15459.15459.2	3.1454	0.5293	1442.641	1442.6031	1	959.7	75.0%	2	R.LLHGFNAEGIHFS.-	2

gi|14028877|ref|NP_07

15.6%

173

20116

8.8

28S ribosomal protein S25, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10876.10876.2	2.8551	0.1266	1848.313	1849.0183	1	566.7	50.0%	1	K.VMTVNYNTHGELGEGAR.K	2
*	step05.16502.16502.2	2.9105	0.0953	1311.497	1310.613	1	694.2	77.8%	1	K.NPWVQIM*MFK.N	2
*	step05.17360.17360.2	2.5671	0.1621	1311.639	1310.613	1	911.5	77.8%	1	K.NPWVQIMM*FK.N	2

U	gi\|83641874\|ref\|NP_11	6	10	15.5%	476	54164	5.6	probable serine carboxypeptidase CPVL precursor [Homo sapiens]
U	gi\|83641876\|ref\|NP_06	6	10	15.5%	476	54164	5.6	probable serine carboxypeptidase CPVL precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.23005.23005.2	4.1129	0.3948	2124.643	2123.4343	1	938.6	65.6%	3	R.DLYSALIQFFQIFPEYK.N	2
step02.8674.8674.2	3.2814	0.3223	1565.454	1565.622	1	1047.4	73.1%	1	K.NNDFYVTGESYAGK.Y	2
step02.13820.13820.2	2.4656	0.3118	961.371	961.1396	1	474.7	85.7%	1	K.FLSLPEVR.Q	2
step05.19092.19092.3	4.6448	0.2757	2728.257	2729.1038	1	915.9	35.7%	1	K.YLREDTVQSVKPWLTEIMNNYK.V	3
step04.13390.13390.3	3.9373	0.3093	1423.802	1423.6013	1	1644.3	58.3%	2	R.GGGHILPYDQPLR.A	3
step04.13431.13431.2	3.578	0.4421	1424.389	1423.6013	1	949.8	70.8%	2	R.GGGHILPYDQPLR.A	2

gi|5174449|ref|NP_006

15.5%

213

22487

10.8

histone H1x [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11999.11999.2	2.5616	0.3141	1208.603	1208.389	1	1082.5	77.8%	2	K.YSQLVVETIR.R	2
*	step05.13127.13127.2	2.3877	0.1042	1375.432	1375.5168	1	444.3	75.0%	1	K.KVPWFDQQNGR.T	2
*	step02.12510.12510.2	2.2307	0.3442	1342.541	1342.5665	1	1258.7	77.3%	1	K.ALVQNDTLLQVK.G	2

gi|284813529|ref|NP_0

15.4%

1506

168936

5.1

protein VPRBP isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.20428.20428.3	4.7232	0.4406	2982.777	2983.3457	1	1111.2	30.0%	1	K.AELTTLLEQWEKEHGSGQDMVPILTR.M	3 3
step05.11472.11472.2	2.3696	0.3132	1391.377	1391.5562	1	464.9	54.2%	1	K.FATEFVAHGGVQK.L	2 2
step05.11988.11988.2	4.6738	0.5287	1537.413	1536.7563	1	1448.0	76.9%	3	R.TEGGILVHPQPPYK.A	2 2
step04.17419.17421.2	3.4381	0.4542	1830.939	1831.0509	1	765.8	56.7%	2	K.SALQIIINCVCGPDNR.I	2 2
step03.17756.17756.2	3.0529	0.3438	986.381	986.2736	1	747.5	93.8%	2	K.VLLSLLSIK.M	2 2
step05.17528.17530.2	4.3186	0.4548	1693.134	1694.0258	1	2259.8	80.8%	1	K.LPLFSSCQIQQLMK.E	2 2
step05.14722.14722.3	3.578	0.2078	1627.267	1626.9225	1	824.5	41.7%	1	R.VSGKPLLIGTDVSLAR.L	3 3
step05.14712.14712.2	3.8809	0.4327	1627.498	1626.9225	1	849.0	70.0%	2	R.VSGKPLLIGTDVSLAR.L	2 2
step05.20069.20069.2	3.359	0.3048	1571.796	1571.9285	1	670.3	62.5%	4	R.ISFPEKELLLLIR.N	2 2
step03.14506.14506.3	4.9382	0.3934	2899.927	2900.2136	1	1707.1	36.6%	2	K.EADLPM*TAASHSSAFTPVTAAASPVSLPR.T	3 3
step05.20564.20564.2	3.4449	0.4385	1953.578	1953.2277	1	491.7	62.5%	2	R.HLPSPPTLDSIITEYLR.E	2 2
step03.13558.13558.2	2.4312	0.1827	1385.078	1385.6482	1	879.0	81.8%	1	R.FLM*LGTCTGQLK.L	2 2
step02.22101.22101.2	2.4098	0.1348	2363.335	2363.7178	1	495.5	38.1%	1	R.DGSLLLTSATWSQPLSALWGMK.S	2 2
step05.16792.16792.2	4.1604	0.4287	1792.404	1793.0591	1	1083.4	75.0%	2	K.LLTLFNPDLANNYKR.N	2 2
step02.13344.13344.2	3.0456	0.2825	1796.975	1798.0293	1	1475.5	70.0%	1	R.TFNATDYKPIATIDVK.R	2 2

Similarities: gi|7662316|ref|NP_055(15:0)

gi|30795123|ref|NP_69

15.4%

598

67394

5.7

F-box/WD repeat-containing protein 8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.10635.10635.2	2.5569	0.3268	1555.153	1555.7198	1	966.9	75.0%	2	R.RWQEELAQAQAPK.K	2 2
	step02.7634.7634.2	4.1255	0.3488	1399.631	1399.5334	1	1977.9	90.9%	2	R.WQEELAQAQAPK.K	2 2
*	step02.14307.14307.2	2.9765	0.1987	1542.592	1542.6761	1	923.9	64.3%	1	R.EGAGGGEQLVDQLIR.D	2
	step03.305.305.3	4.4297	0.489	2368.81	2368.6294	1	1935.6	40.0%	2	R.INSSLAVAAYEDGFLNIWDLR.T	3 3
	step02.14487.14487.2	2.8728	0.2068	1460.816	1460.6998	1	948.9	72.7%	2	K.LVQYLEIVPETR.R	2 2
	step06.20723.20723.2	4.731	0.435	1851.929	1852.233	1	2135.3	71.9%	1	R.RYPVAVAAAGDLMYLLK.A	2 2
	step05.13638.13638.2	3.4885	0.3702	1467.053	1467.6556	1	1406.0	73.1%	2	R.SGNIALSLSAHQLR.V	2 2

Similarities: gi|30795121|ref|NP_03(6:1)

gi|13994259|ref|NP_11

15.3%

430

48006

9.9

28S ribosomal protein S5, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20813.20813.2	3.8033	0.5343	1636.336	1635.9962	1	891.0	80.8%	4	R.YGFLWPGLNVPLMK.N	2
*	step05.18937.18937.2	3.6785	0.4117	1651.761	1651.9956	1	703.1	73.1%	3	R.YGFLWPGLNVPLM*K.N	2
*	step03.16464.16464.2	4.0304	0.4344	1739.673	1740.018	1	2077.9	73.3%	2	K.VSGSINM*LSLTQGLFR.G	2
*	step03.12384.12384.2	2.6013	0.3442	923.429	923.0946	1	932.2	85.7%	2	K.GLHVVEIR.E	2
*	step05.16645.16645.3	3.8394	0.2961	2428.67	2428.8093	1	880.4	32.1%	2	K.GLHVVEIREECGPLPIVVASPR.G	3
*	step04.11512.11512.2	2.8468	0.1566	1687.141	1686.8547	21	376.6	38.5%	1	K.TAQGMKRSVWS#NLK.R	2

gi|16554604|ref|NP_05

15.3%

190

21771

8.9

28S ribosomal protein S23, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14680.14680.3	4.5285	0.4697	1742.667	1742.9155	1	1063.5	57.7%	2	K.AKAPIQDIWYHEDR.I	3
*	step02.5326.5326.2	4.3016	0.4175	1695.509	1695.849	1	1704.1	71.4%	3	K.LGETDEEKLFVETGK.A	2

U	gi\|228008291\|ref\|NP_0	6	9	15.2%	623	69603	8.6	heterogeneous nuclear ribonucleoprotein Q isoform 1 [Homo sapiens]
U	gi\|228008400\|ref\|NP_0	6	9	16.9%	562	62656	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 6 [Homo sapiens]
U	gi\|228008398\|ref\|NP_0	6	9	18.0%	527	58736	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
U	gi\|228008295\|ref\|NP_0	6	9	16.2%	588	65682	8.6	heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
U	gi\|228008293\|ref\|NP_0	6	9	16.9%	561	62528	7.6	heterogeneous nuclear ribonucleoprotein Q isoform 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.19854.19854.2	5.9038	0.59	2337.004	2335.6409	1	2819.0	67.5%	2	R.AIEALKEFNEDGALAVLQQFK.D	2
	step03.14337.14337.3	5.4963	0.443	2695.371	2695.964	1	1764.1	40.0%	2	R.KYGGPPPDSVYSGQQPSVGTEIFVGK.I	3 3
	step02.9030.9030.2	2.7276	0.4078	1293.475	1293.5392	1	1281.4	80.0%	1	R.LMMDPLTGLNR.G	2 2
2	step05.12563.12563.2	2.4919	0.125	1341.226	1340.5073	1	495.0	59.1%	1	K.HIGVCISVANNR.L	2 2 2
	step02.16355.16355.2	3.0308	0.4472	1475.095	1474.6385	1	1259.4	79.2%	1	R.NLANTVTEEILEK.A	2 2
	step04.15509.15509.2	3.7029	0.4629	1555.072	1554.7302	1	1285.5	81.8%	2	K.LKDYAFIHFDER.D	2 2

Similarities: gi|156151392|ref|NP_0(1:5)
gi|228008396|ref|NP_0(5:1)

gi|5031569|ref|NP_005

15.2%

376

42614

6.6

alpha-centractin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12815.12815.2	2.9757	0.3207	1401.282	1401.5876	1	710.9	75.0%	2	K.YCFPNYVGRPK.H	2 2
	step04.17767.17767.3	5.7508	0.4219	3159.105	3159.5854	1	1218.3	31.9%	3	R.TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR.I	3 3
*	step04.19566.19566.2	4.7402	0.4615	1685.429	1684.9573	1	1962.7	70.0%	2	R.TLFSNIVLSGGSTLFK.G	2

Similarities: gi|11342680|ref|NP_00(2:1)

gi|4506133|ref|NP_002

15.2%

369

40926

7.4

phosphoribosyl pyrophosphate synthase-associated protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19501.19501.2	3.38	0.3725	1817.832	1817.2286	2	422.9	46.9%	2	R.SVAAIHPSLEIPMLIPK.E	2
*	step06.26404.26404.3	4.0322	0.4634	2461.38	2461.7898	1	1992.1	42.0%	1	R.IAIIVDDIIDDVDSFLAAAETLK.E	3
*	step06.17938.17938.2	3.1269	0.3943	1715.265	1715.9982	3	548.6	46.7%	2	K.IFVMATHGLLSSDAPR.R	2

gi|5032007|ref|NP_005

15.2%

322

34911

6.4

transcriptional activator protein Pur-alpha [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16930.16930.2	5.5717	0.5888	2312.147	2312.6106	1	927.2	56.8%	5	R.GPGLGSTQGQTIALPAQGLIEFR.D	2
*	step04.16995.16995.3	4.6145	0.3265	2312.435	2312.6106	1	1914.3	40.9%	2	R.GPGLGSTQGQTIALPAQGLIEFR.D	3
*	step02.5861.5861.3	4.9166	0.4227	2890.78	2891.0906	1	1280.9	35.0%	2	K.LIDDYGVEEEPAELPEGTSLTVDNKR.F	3

gi|63162572|ref|NP_00

14.9%

545

60534

6.5

T-complex protein 1 subunit gamma isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17564.17564.2	4.3208	0.2379	2149.522	2148.5571	1	678.7	57.9%	2	K.M*LLDPMGGIVMTNDGNAILR.E	2
	step03.1046.1046.3	6.6556	0.4963	3419.417	3419.9216	1	1225.5	34.3%	2	R.ILQMEEEYIQQLCEDIIQLKPDVVITEK.G	3 3
	step05.492.492.3	3.619	0.4228	3435.727	3435.921	5	584.6	24.1%	1	R.ILQM*EEEYIQQLCEDIIQLKPDVVITEK.G	3 3
	step04.15453.15453.2	3.2693	0.4534	1404.754	1404.6199	1	1350.5	72.7%	4	K.GISDLAQHYLMR.A	2 2
	step03.14522.14522.2	2.6053	0.4285	1421.937	1420.6193	1	427.6	63.6%	1	K.GISDLAQHYLM*R.A	2 2
	step02.8578.8578.2	2.5057	0.3484	1235.308	1235.3898	1	752.4	77.8%	1	R.NLQDAMQVCR.N	2 2
	step03.16432.16432.2	2.8176	0.2225	1186.923	1186.4265	1	770.6	90.0%	1	K.TAVETAVLLLR.I	2 2

Similarities: gi|58761484|ref|NP_00(6:1)

gi|12232469|ref|NP_07

14.8%

391

43993

6.1

protein RMD5 homolog A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18141.18141.2	4.1005	0.3838	1534.474	1534.8071	1	1792.9	81.8%	5	R.LLNEVMVEHFFR.Q	2
*	step05.15310.15310.2	2.7696	0.2127	1511.897	1511.7533	1	888.6	70.8%	2	R.VLRPALEWAVSNR.E	2
*	step05.13328.13328.2	2.2958	0.2103	1344.525	1344.5027	1	453.2	70.0%	2	K.NFQPFALNHQK.D	2
*	step06.19468.19468.2	3.1561	0.4705	1724.615	1723.9854	1	718.5	66.7%	1	K.CWYHSIFACPILR.Q	2
*	step05.10184.10186.2	2.5996	0.2786	1055.034	1055.2496	1	847.7	87.5%	1	K.LVCGHIISR.D	2

gi|156415990|ref|NP_0

14.8%

364

38518

10.8

Y-box-binding protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.7362.7362.2	2.9473	0.4105	1662.858	1662.8286	1	1036.8	55.9%	1	R.TPGNPATAVSGTPAPPAR.S	2
	step01.6190.6190.2	2.251	0.3592	941.774	941.0253	1	1079.0	92.9%	1	R.NGYGFINR.N	2 2 2 2
	step02.8592.8592.2	3.084	0.4298	1288.206	1287.4463	1	478.1	85.0%	2	K.EDVFVHQTAIK.R	2 2 2 2
	step01.7107.7107.2	4.9136	0.5241	1796.872	1796.8671	1	1526.7	71.9%	8	R.SVGDGETVEFDVVEGEK.G	2 2 2 2

Similarities: gi|34098946|ref|NP_00(3:1)
gi|224586884|ref|NP_0(3:1)
gi|224586882|ref|NP_0(3:1)

gi|13236559|ref|NP_07

14.8%

263

29412

10.0

multiple myeloma tumor-associated protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5388.5388.2	3.6933	0.2669	1713.752	1713.8674	2	441.1	53.3%	1	R.APCAGPSREEELAAVR.E	2
*	step03.12234.12234.2	3.3057	0.4363	1174.666	1174.3326	1	1138.5	75.0%	2	R.LLGLGSASGSVGR.V	2
*	step06.17725.17725.2	2.2789	0.283	1167.578	1167.3451	3	579.4	66.7%	1	K.LGLSVFTHHR.V	2

gi|5031753|ref|NP_005

14.7%

449

49229

6.3

heterogeneous nuclear ribonucleoprotein H [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16181.16181.2	2.8079	0.2104	1842.468	1842.9838	1	804.8	53.1%	1	R.STGEAFVQFASQEIAEK.A	2 2
	step02.11500.11500.2	2.5513	0.3379	1602.242	1602.7039	1	773.4	66.7%	1	R.DLNYCFSGMSDHR.Y	2 2
*	step04.11256.11257.2	4.7249	0.4104	2099.744	2099.2236	1	1027.7	63.9%	2	R.YGDGGSTFQSTTGHCVHMR.G	2
	step02.18632.18632.2	4.5569	0.3458	1997.951	1998.1838	1	1436.2	65.6%	2	R.ATENDIYNFFSPLNPVR.V	2 2

Similarities: gi|148470397|ref|NP_0(1:3)
gi|74099697|ref|NP_00(2:2)

U	gi\|21536320\|ref\|NP_65	7	13	14.6%	756	84794	8.8	heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform d [Homo sapiens]
U	gi\|21536326\|ref\|NP_00	7	13	12.9%	856	95739	6.9	heterogeneous nuclear ribonucleoprotein U-like protein 1 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21390.21390.2	2.5985	0.2663	2076.683	2076.2961	1	241.6	41.7%	1	R.SSGYPLTIEGFAYLWSGAR.A	2
step03.14518.14518.2	4.338	0.4188	1595.753	1595.867	1	952.6	75.0%	3	K.EALGGQALYPHVLVK.N	2
step06.20404.20404.2	3.6237	0.4971	2561.833	2562.8975	1	806.8	52.4%	4	R.AEPYCSVLPGFTFIQHLPLSER.I	2
step04.17773.17773.2	4.1283	0.453	1905.692	1906.2943	1	1268.3	64.7%	1	K.SKAECEILMMVGLPAAGK.T	2
step03.14220.14222.2	3.955	0.4356	1481.462	1481.7426	1	731.4	75.0%	2	K.KYNILGTNAIMDK.M	2
step05.13145.13145.2	2.3972	0.3241	1167.69	1168.3533	1	596.0	75.0%	1	K.MRPFEGFQR.K	2
step02.5789.5789.2	2.9601	0.4484	1645.325	1645.8297	1	1099.4	76.9%	1	K.AIVICPTDEDLKDR.T	2

gi|57863257|ref|NP_11

14.6%

556

60344

6.1

T-complex protein 1 subunit alpha isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8750.8750.2	2.6957	0.3042	972.828	973.1055	1	868.4	83.3%	1	K.SSLGPVGLDK.M	2
	step06.1889.1889.2	2.3612	0.2034	2239.006	2237.647	32	182.9	32.5%	1	K.IIGINGDFFANM*VVDAVLAIK.Y	2 2
	step02.12040.12040.2	2.7488	0.2015	1147.384	1147.3489	1	1321.4	83.3%	1	R.YPVNSVNILK.A	2 2
	step06.17677.17677.2	3.1782	0.2185	1924.333	1924.231	2	327.8	46.9%	2	K.LGVQVVITDPEKLDQIR.Q	2 2
	step05.12872.12872.2	3.328	0.498	1298.851	1298.5104	1	896.4	80.0%	1	R.SLHDALCVVKR.V	2 2
	step05.14833.14833.2	3.1091	0.3661	1356.539	1356.5549	1	1281.0	86.4%	1	K.WIGLDLSNGKPR.D	2 2

Similarities: gi|57863259|ref|NP_00(5:1)

U	gi\|213417911\|ref\|NP_0	3	8	14.6%	302	33123	8.4	interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 2 [Homo sapiens]
U	gi\|4505581\|ref\|NP_003	3	8	14.1%	313	34404	8.4	interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 1 [Homo sapiens]
U	gi\|213417919\|ref\|NP_0	3	8	15.3%	288	31635	8.4	interferon-inducible double stranded RNA-dependent protein kinase activator A isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13465.13465.2	3.3139	0.4593	1432.391	1432.6699	1	482.7	72.7%	4	K.TPIQVLHEYGM*K.T	2
step05.16200.16200.2	3.0217	0.4193	1547.469	1547.7393	1	947.3	70.8%	2	R.SDVQIHVPTFTFR.V	2
step02.21995.21995.2	2.9321	0.2817	2119.035	2119.4438	1	247.3	47.2%	2	R.SLLSIPNTDYIQLLSEIAK.E	2

U	gi\|153792590\|ref\|NP_0	11	23	14.5%	854	98161	5.2	heat shock protein HSP 90-alpha isoform 1 [Homo sapiens]
U	gi\|154146191\|ref\|NP_0	11	23	16.9%	732	84660	5.0	heat shock protein HSP 90-alpha isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15806.15806.3	4.8645	0.3406	3113.627	3112.44	1	941.6	34.6%	2	R.YESLTDPSKLDSGKELHINLIPNKQDR.T	3
	step05.1557.1558.3	3.5669	0.084	3353.464	3352.3796	55	232.1	16.9%	1	R.Y#ESLTDPS#KLDS#GKELHINLIPNKQDR.T	3
	step05.14606.14606.3	3.7972	0.378	2091.108	2091.357	1	835.5	38.2%	2	K.LDSGKELHINLIPNKQDR.T	3
	step05.14297.14297.2	3.3826	0.3759	1591.584	1590.8088	1	509.4	66.7%	2	K.ELHINLIPNKQDR.T	2
	step02.13277.13277.2	2.2248	0.2831	1243.565	1243.4349	2	538.6	59.1%	1	K.ADLINNLGTIAK.S	2 2
	step06.19801.19801.2	4.6409	0.3984	1780.833	1780.0587	1	1203.3	82.1%	5	K.HSQFIGYPITLFVEK.E	2
	step01.12333.12333.2	2.9824	0.2824	1835.117	1834.8738	1	759.5	57.1%	3	R.NPDDITNEEYGEFYK.S	2
	step02.13506.13506.2	3.7826	0.3669	1528.368	1528.648	1	756.8	66.7%	2	K.SLTNDWEDHLAVK.H	2 2
2	step03.14592.14592.1	2.0838	0.2763	815.675	816.02563	79	496.3	66.7%	2	R.ALLFVPR.R	1
	step02.21412.21412.2	2.2522	0.2665	2417.002	2416.771	1	244.0	36.1%	1	R.VFIMDNCEELIPEYLNFIR.G	2
	step05.15695.15695.2	5.0195	0.546	1916.871	1916.1707	1	1560.5	76.7%	2	K.KHLEINPDHSIIETLR.Q	2

Similarities: gi|20149594|ref|NP_03(2:9)

gi|30795121|ref|NP_03

14.5%

532

60705

5.6

F-box/WD repeat-containing protein 8 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.10635.10635.2	2.5569	0.3268	1555.153	1555.7198	1	966.9	75.0%	2	R.RWQEELAQAQAPK.K	2 2
step02.7634.7634.2	4.1255	0.3488	1399.631	1399.5334	1	1977.9	90.9%	2	R.WQEELAQAQAPK.K	2 2
step03.305.305.3	4.4297	0.489	2368.81	2368.6294	1	1935.6	40.0%	2	R.INSSLAVAAYEDGFLNIWDLR.T	3 3
step02.14487.14487.2	2.8728	0.2068	1460.816	1460.6998	1	948.9	72.7%	2	K.LVQYLEIVPETR.R	2 2
step06.20723.20723.2	4.731	0.435	1851.929	1852.233	1	2135.3	71.9%	1	R.RYPVAVAAAGDLMYLLK.A	2 2
step05.13638.13638.2	3.4885	0.3702	1467.053	1467.6556	1	1406.0	73.1%	2	R.SGNIALSLSAHQLR.V	2 2

Similarities: gi|30795123|ref|NP_69(6:0)

U	gi\|4506003\|ref\|NP_002	4	6	14.5%	330	37512	6.3	serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 1 [Homo sapiens]
U	gi\|56790945\|ref\|NP_00	4	6	14.1%	341	38631	6.6	serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 3 [Homo sapiens]
U	gi\|4506007\|ref\|NP_002	4	6	14.9%	323	36984	6.5	serine/threonine-protein phosphatase PP1-gamma catalytic subunit [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21502.21502.2	4.5761	0.4246	1955.422	1954.3386	1	884.4	59.4%	2	R.EIFLSQPILLELEAPLK.I	2 2
step06.19186.19186.2	2.2707	0.1316	1440.518	1440.7135	3	515.2	65.0%	1	K.IKYPENFFLLR.G	2 2 2
step05.17682.17682.3	4.3279	0.3395	1441.215	1440.7135	1	1284.4	62.5%	2	K.IKYPENFFLLR.G	3 3 3
step05.15062.15062.3	3.9873	0.3215	2405.479	2405.7065	1	854.6	35.5%	1	K.IFCCHGGLSPDLQSMEQIRR.I	3 3 3

Similarities: gi|4506005|ref|NP_002(4:0)
gi|45827798|ref|NP_99(3:1)

gi|18152783|ref|NP_54

14.5%

214

24519

10.0

60S ribosomal protein L10-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15335.15335.2	2.4673	0.2607	990.348	990.18414	8	416.7	78.6%	2	K.IRIFDLGR.K	2 2
step05.8015.8015.2	2.5108	0.2131	1189.281	1189.349	4	313.5	68.2%	5	R.GAFGKPQGTVAR.V	2 2
step06.18069.18069.2	3.6041	0.5183	1253.96	1253.5428	1	1491.0	90.0%	2	R.VHIGQVIMSIR.T	2 2
step05.14419.14419.2	3.0136	0.5162	1270.63	1269.5422	1	1060.0	75.0%	3	R.VHIGQVIM*SIR.T	2 2

Similarities: gi|223890243|ref|NP_0(4:0)

gi|4506629|ref|NP_000

14.5%

159

17752

11.7

60S ribosomal protein L29 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.9784.9785.2	2.3788	0.4536	914.088	913.09814	1	762.6	92.9%	3	R.LAYIAHPK.L	2
*	step02.6580.6580.2	3.3831	0.3407	1378.466	1378.559	1	1138.2	75.0%	2	K.AQAAAPASVPAQAPK.R	2

gi|16554609|ref|NP_07

14.4%

194

20616

10.8

28S ribosomal protein S11, mitochondrial isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14305.14305.2	3.7519	0.2596	1325.607	1325.5807	1	1117.2	80.0%	3	K.KFEEIPIAHIK.A	2
	step05.10528.10528.2	5.7306	0.529	1528.722	1528.739	1	2480.4	84.4%	2	K.KGTGIAAQTAGIAAAAR.A	2

gi|83700235|ref|NP_00

14.3%

407

46402

5.5

eukaryotic initiation factor 4A-II [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13851.13851.3	3.7806	0.4601	1828.66	1829.0483	1	1273.0	46.7%	1	R.GIYAYGFEKPSAIQQR.A	3 3 3
	step04.13774.13774.2	4.4353	0.4194	1829.503	1829.0483	1	1328.6	76.7%	4	R.GIYAYGFEKPSAIQQR.A	2 2 2
	step02.8092.8092.2	3.6273	0.5063	1395.217	1395.5	1	944.8	73.1%	1	K.GYDVIAQAQSGTGK.T	2 2
*	step05.11748.11748.2	4.131	0.5196	1546.051	1545.7681	1	2054.0	78.6%	2	K.LQAEAPHIVVGTPGR.V	2
	step01.16203.16203.2	2.7141	0.1729	1557.303	1556.7865	1	543.0	70.8%	2	K.MFVLDEADEMLSR.G	2 2

Similarities: gi|4503529|ref|NP_001(4:1)
gi|7661920|ref|NP_055(2:3)

gi|238859597|ref|NP_0

14.2%

430

48565

10.1

RNA-binding protein 34 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.18651.18652.3	5.5082	0.4056	2314.031	2313.72	1	2010.0	46.2%	3	R.LASLFSSLEPQIQPVYVPVPK.Q	3 3
	step05.18528.18528.2	5.2211	0.5522	2314.491	2313.72	1	730.8	50.0%	5	R.LASLFSSLEPQIQPVYVPVPK.Q	2 2
	step03.4922.4922.2	4.3304	0.4277	1770.64	1770.876	1	805.6	63.3%	5	R.ESALASADLEEEIHQK.Q	2 2
*	step03.11901.11901.2	2.3059	0.4162	1244.49	1244.4628	1	349.5	68.2%	1	R.SLIPAEGTLSKK.L	2
*	step03.14596.14596.2	3.1656	0.3434	1406.522	1406.6292	1	1563.8	90.9%	4	K.HFLDCGSIMAVR.I	2

Similarities: gi|238859599|ref|NP_0(3:2)

gi|156415992|ref|NP_0

14.2%

346

39543

9.3

dimethyladenosine transferase 1, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13622.13622.2	5.404	0.4969	2234.453	2235.4846	1	2113.6	64.3%	2	R.KAGNLTNAYVYEVGPGPGGITR.S	2
*	step03.13656.13656.1	2.1981	0.1823	1128.541	1129.3335	2	692.5	72.2%	1	R.IVHGDVLTFK.V	1
*	step03.13623.13623.2	2.6551	0.507	1128.72	1129.3335	1	431.2	83.3%	2	R.IVHGDVLTFK.V	2
*	step05.14300.14300.2	2.8159	0.1073	1485.522	1485.7526	1	900.5	79.2%	1	R.IVHGDVLTFKVEK.A	2
*	step02.16572.16572.2	2.6113	0.2361	1622.967	1622.8907	1	400.5	57.7%	2	R.LLELADIDPTLRPR.Q	2

U	gi\|62953129\|ref\|NP_00	4	7	14.1%	355	40410	8.8	macrophage erythroblast attacher isoform 2 [Homo sapiens]
U	gi\|62953131\|ref\|NP_00	4	7	12.6%	396	45287	8.7	macrophage erythroblast attacher isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21905.21905.2	5.3034	0.5971	2147.133	2146.418	1	1476.2	62.5%	2	K.TLSGCPAVDSVVSLLDGVVEK.L	2
step03.14070.14070.2	2.6333	0.3163	1029.392	1029.3057	1	1116.8	92.9%	1	R.MMVEHLLR.C	2
step02.16348.16348.2	3.3379	0.3123	1161.261	1161.3755	1	992.8	93.8%	2	R.IQEFIELIR.Q	2
step03.12834.12834.2	3.0219	0.1667	1450.632	1451.6084	1	780.9	68.2%	2	R.TKEVFHFSQAEK.V	2

gi|55769546|ref|NP_06

14.0%

392

43964

8.9

p21-activated protein kinase-interacting protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13770.13770.2	3.3894	0.3832	1371.202	1371.5664	1	1784.3	83.3%	2	K.GQVTFLSIHPSGK.L	2
*	step03.16550.16550.2	2.8967	0.3017	1834.761	1835.0479	2	508.5	46.9%	1	K.FLSESVLAVAGDEEVIR.F	2
*	step04.17218.17218.3	3.8009	0.3268	2837.281	2837.1992	1	924.9	30.2%	2	R.VKDM*FSFEIPEHHVIVSASSDGFIK.M	3
*	step03.17956.17956.3	3.7734	0.4656	2595.09	2593.8953	1	830.9	31.8%	1	K.DMFSFEIPEHHVIVSASSDGFIK.M	3

gi|38327634|ref|NP_00

13.9%

670

75407

9.5

ATP-dependent RNA helicase DDX18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12215.12215.2	2.493	0.1883	1041.578	1041.2295	2	506.7	68.8%	1	K.SIRPLLEGR.D	2
*	step05.1360.1360.2	3.9662	0.4098	1528.381	1527.9156	1	1131.7	80.8%	14	K.TLAFLIPAVELIVK.L	2
*	step04.11717.11717.2	3.276	0.455	1727.643	1727.986	1	320.4	61.5%	1	R.LLDHMQNTPGFMYK.N	2
*	step05.12806.12806.2	2.2337	0.1187	1441.698	1440.6537	2	282.2	63.6%	1	R.RQTMLFSATQTR.K	2
*	step06.20764.20764.2	5.6606	0.6041	2272.9	2272.6296	1	1904.4	61.1%	3	K.YHYELLNYIDLPVLAIHGK.Q	2
*	step03.18660.18660.3	4.0356	0.3174	3010.531	3011.2896	1	451.8	30.2%	1	R.GLDIPEVDWIVQYDPPDDPKEYIHR.V	3

gi|157426877|ref|NP_0

13.9%

373

40843

9.3

RNA 3'-terminal phosphate cyclase-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13195.13195.2	3.3805	0.2508	1271.231	1270.5466	1	1704.2	81.8%	2	R.LVLSTLSGRPVK.I	2
*	step05.12409.12409.2	2.287	0.3326	1309.39	1309.5796	1	639.5	72.7%	1	K.VLKPIQLTDPGK.I	2
*	step03.16954.16954.2	2.4499	0.1678	1656.388	1656.9259	1	295.0	62.5%	1	K.FIPDIYIYTDHMK.G	2
*	step05.20057.20057.2	3.7537	0.4233	1718.383	1719.06	1	1734.0	85.7%	3	K.VLLGPLSPYTIEFLR.H	2

U	gi\|55956919\|ref\|NP_11	4	10	13.9%	332	35968	6.9	heterogeneous nuclear ribonucleoprotein A/B isoform a [Homo sapiens]
U	gi\|55956921\|ref\|NP_00	4	10	16.1%	285	30588	7.9	heterogeneous nuclear ribonucleoprotein A/B isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15042.15042.2	3.5478	0.3933	1456.419	1456.6915	1	1446.9	83.3%	2	K.MFVGGLSWDTSKK.D	2
2	step02.7220.7220.2	2.7164	0.4451	1168.379	1168.3151	1	1180.4	88.9%	1	K.FGEVVDCTIK.M	2 2 2
	step06.19743.19743.2	2.4947	0.2102	929.227	929.13916	1	699.9	85.7%	5	R.GFGFILFK.D	2
	step06.18689.18689.2	3.8466	0.4376	1798.803	1799.102	1	1016.6	67.9%	2	R.GFVFITFKEEEPVKK.V	2

Similarities: gi|14110414|ref|NP_00(1:3)
gi|14110407|ref|NP_11(1:3)

gi|4506609|ref|NP_000

13.8%

196

23466

11.5

60S ribosomal protein L19 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13386.13386.3	4.9124	0.4815	2199.91	2200.3972	1	1536.4	45.8%	2	K.KKVWLDPNETNEIANANSR.Q	3
*	step04.13492.13492.2	2.5086	0.2209	2200.886	2200.3972	1	358.7	41.7%	1	K.KKVWLDPNETNEIANANSR.Q	2
*	step02.12111.12111.2	5.2783	0.6135	1944.338	1944.0514	1	2287.4	84.4%	2	K.VWLDPNETNEIANANSR.Q	2
*	step05.11946.11946.2	2.6743	0.3323	1020.863	1021.26166	1	652.0	85.7%	2	R.ILMEHIHK.L	2
*	step05.10219.10219.2	2.5309	0.319	1037.015	1037.2611	1	490.7	85.7%	1	R.ILM*EHIHK.L	2

U	gi\|224451080\|ref\|NP_0	14	38	13.7%	1117	124602	5.7	cytospin-A [Homo sapiens]
U	gi\|224451082\|ref\|NP_0	14	38	13.7%	1117	124602	5.7	cytospin-A [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.11172.11172.2	4.2994	0.4273	1572.72	1572.812	1	665.4	70.0%	3	K.KLPSAGQGANDMALAK.R	2
step03.13916.13916.2	2.6917	0.1346	1000.787	1001.2452	1	878.0	93.8%	2	K.VKDLLTLAK.T	2
step04.14122.14122.2	3.7399	0.3689	1224.365	1224.4348	1	1383.0	88.9%	1	K.TKDVEILHLR.N	2
step04.14063.14063.3	3.6993	0.1809	1224.588	1224.4348	1	1149.8	63.9%	1	K.TKDVEILHLR.N	3
step02.15842.15842.2	4.7884	0.3862	2013.982	2013.1936	1	1827.5	68.8%	2	R.SLLDEHHISYVIDEDVK.S	2
step03.13827.13827.2	4.818	0.4545	1709.489	1708.9404	1	803.3	75.0%	3	R.EQLLGVQQHLSNTLK.M	2
step02.17904.17904.3	4.8566	0.52	2689.233	2689.9163	1	1759.9	37.0%	2	K.VAELYSIHNSGDKSDIQDLLESVR.L	3
step02.17475.17475.2	4.2153	0.3975	1724.601	1724.9366	1	3191.3	85.7%	2	K.LHDNLIISDLENTVK.K	2
step02.17144.17144.2	3.2327	0.3005	1854.382	1853.1096	1	877.3	53.3%	1	K.LHDNLIISDLENTVKK.L	2
step02.10947.10947.2	2.901	0.2723	1259.037	1259.4164	1	1343.6	88.9%	1	R.VYNYMNAVER.D	2
step03.6460.6460.2	2.5246	0.2401	973.784	974.1569	1	307.0	68.8%	3	R.TPLSPSPM*K.T	2
step04.8169.8169.2	3.3351	0.4687	1226.166	1226.431	1	1001.3	72.7%	7	K.TPPAAAVSPMQR.H	2
step04.6257.6257.2	3.4407	0.4589	1241.544	1242.4304	1	1135.9	72.7%	8	K.TPPAAAVSPM*QR.H	2
step05.14317.14317.2	3.9696	0.4825	1821.766	1822.0605	1	592.2	71.4%	2	K.RPNYGEIPVQEHLLR.T	2

gi|55741849|ref|NP_00

13.7%

942

103963

5.8

DDB1- and CUL4-associated factor 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.13439.13439.2	2.3782	0.4183	1597.856	1597.7567	1	392.7	61.5%	1	R.GLHGDPLLTQDFQR.R	2
*	step06.18549.18549.2	2.819	0.3172	1620.254	1620.9032	1	1735.6	83.3%	1	R.VLLWHMEQAIHSR.V	2
*	step06.18316.18316.2	4.4569	0.5971	2033.422	2034.1713	1	1323.9	64.7%	2	K.GEHHSNIFCLAFNSGNTK.V	2
*	step05.18238.18238.3	4.4966	0.3357	3218.34	3218.5398	1	722.4	28.7%	4	R.ESPHGEPFCLANYPSAFHSVMFNPVEPR.L	3
*	step05.14374.14374.2	3.226	0.4621	1310.385	1310.5261	1	1026.7	85.0%	2	R.LPPVLYDIHSR.L	2
*	step03.13131.13131.2	4.227	0.4201	1769.848	1770.9808	1	1006.6	82.1%	3	R.FNPHTYMICSSGVEK.I	2
*	step04.9735.9736.2	2.5738	0.1	1319.745	1319.2952	1	479.5	63.0%	2	R.Y#SYISYSNNK.D	2
*	step03.18550.18550.2	2.9396	0.1076	2315.856	2315.2942	1	374.5	27.4%	1	K.LNGKALS#S#RAEEPPS#PPVPK.A	2

gi|4757834|ref|NP_004

13.7%

211

23772

6.7

BAG family molecular chaperone regulator 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14332.14332.3	5.4111	0.4987	2430.689	2430.6729	1	1396.2	40.5%	2	K.SHLMSLYSACSSEVPHGPVDQK.F	3
*	step04.12925.12925.2	2.5886	0.0965	900.969	901.0889	1	1017.6	100.0%	1	R.RLETLLR.N	2

gi|4507311|ref|NP_003

13.7%

117

13193

8.1

transcription elongation factor SPT4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12929.12929.2	3.9427	0.4331	1681.664	1681.9167	1	795.7	76.7%	2	R.VSNFKPGVYAVSVTGR.L	2
*	step05.12942.12942.3	3.5482	0.4064	1682.963	1681.9167	1	1396.4	45.0%	1	R.VSNFKPGVYAVSVTGR.L	3

gi|4504425|ref|NP_002

13.5%

215

24894

5.7

high mobility group protein B1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12419.12419.2	3.2423	0.1517	1651.945	1650.9644	10	421.0	53.8%	1	R.EMKTYIPPKGETKK.K	2
*	step05.12440.12440.2	3.1435	0.3668	1521.644	1521.7433	1	557.9	57.1%	2	K.IKGEHPGLSIGDVAK.K	2

gi|222144293|ref|NP_0

538

60222

5.0

importin subunit alpha-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13905.13905.2	2.3961	0.1796	938.685	939.1356	1	531.1	91.7%	2	R.FVEFLKR.K	2 2
*	step03.2098.2098.2	3.1694	0.4162	2149.757	2149.5083	1	425.5	47.1%	2	R.DYVLDCNILPPLLQLFSK.Q	2
	step05.15922.15922.2	3.1157	0.3788	1531.294	1531.8048	1	1038.8	81.8%	2	R.RLVELLMHNDYK.V	2 2 2
*	step03.778.778.2	4.6696	0.5531	2469.087	2468.922	1	987.9	52.5%	2	K.YLVELGCIKPLCDLLTVMDSK.I	2
*	step03.738.738.3	5.2356	0.5082	2469.087	2468.922	1	2035.6	43.8%	2	K.YLVELGCIKPLCDLLTVMDSK.I	3
	step03.18346.18346.2	3.9367	0.3665	1553.504	1552.8436	1	2172.8	84.6%	2	K.IVQVALNGLENILR.L	2 2 2

Similarities: gi|6912478|ref|NP_036(3:3)
gi|39812229|ref|NP_00(2:4)

gi|260099676|ref|NP_0

464

54240

6.7

insulin-degrading enzyme isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.216.216.3	5.7532	0.4762	2788.096	2788.2095	1	2759.0	40.2%	3	R.LLMTEVAWTKDELKEALDDVTLPR.L	3 3
step04.15577.15577.1	1.8211	0.0991	1045.303	1045.2598	28	337.9	56.2%	1	K.AFIPQLLSR.L	1 1
step04.15514.15514.2	2.5558	0.2537	1045.383	1045.2598	2	471.2	81.2%	2	K.AFIPQLLSR.L	2 2
step05.15175.15175.2	4.3797	0.5401	1595.82	1595.8239	1	2301.6	84.6%	2	R.TKEQLGYIVFSGPR.R	2 2
step05.15212.15212.3	3.8661	0.2663	1596.084	1595.8239	11	1011.9	42.3%	1	R.TKEQLGYIVFSGPR.R	3 3
step05.13890.13890.2	4.4786	0.4211	1844.628	1845.0908	1	1243.6	85.7%	2	R.FIIQSEKPPHYLESR.V	2 2
step05.13897.13897.3	3.7266	0.3476	1845.455	1845.0908	1	1487.7	51.8%	1	R.FIIQSEKPPHYLESR.V	3 3

Similarities: gi|155969707|ref|NP_0(7:0)

gi|39930523|ref|NP_61

381

41037

5.0

hypothetical protein LOC144097 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13518.13518.2	4.1852	0.429	2068.87	2069.2637	1	1274.9	61.8%	3	R.SHILEQHPHTLDLSPSEK.S	2
*	step04.13932.13932.3	5.1779	0.5393	2070.146	2069.2637	1	1248.3	50.0%	2	R.SHILEQHPHTLDLSPSEK.S	3
*	step03.1215.1215.2	3.3479	0.3389	2000.591	2001.2291	1	3026.6	73.5%	1	K.SNILEAWSEGVALLQDVR.A	2
*	step03.1226.1226.3	5.0036	0.313	2000.753	2001.2291	1	3681.6	57.4%	1	K.SNILEAWSEGVALLQDVR.A	3
*	step02.19361.19361.2	3.0884	0.3701	1759.805	1758.9767	1	1415.1	82.1%	1	R.MEEPPAVSLLQDWSR.H	2

gi|310115367|ref|XP_0

194

23079

8.3

PREDICTED: protein FAM115A-like isoform 1, partial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14678.14678.2	2.7589	0.3681	1220.833	1221.3927	1	645.3	75.0%	2	K.GLWGPVHELGR.N	2 2 2
	step03.20884.20884.2	2.8723	0.247	1818.564	1819.0967	1	848.3	64.3%	1	K.NLAPFFEAWAWPIQK.E	2 2 2

Similarities: gi|310115369|ref|XP_0(2:0)
gi|7662276|ref|NP_055(2:0)

U	gi\|14165464\|ref\|NP_11	4	8	13.3%	550	59037	9.2	polypyrimidine tract-binding protein 1 isoform b [Homo sapiens]
U	gi\|4506243\|ref\|NP_002	4	8	13.1%	557	59633	9.2	polypyrimidine tract-binding protein 1 isoform a [Homo sapiens]
U	gi\|14165466\|ref\|NP_11	4	8	13.7%	531	57221	9.2	polypyrimidine tract-binding protein 1 isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19058.19058.2	2.8098	0.3614	2114.765	2113.4824	1	464.5	44.7%	1	R.KLPIDVTEGEVISLGLPFGK.V	2
step05.12936.12936.2	3.1822	0.4165	1432.165	1432.6083	1	734.8	81.8%	2	R.GQPIYIQFSNHK.E	2
step05.17896.17896.2	5.1849	0.5367	2276.123	2276.6213	1	1238.4	63.6%	4	R.IAIPGLAGAGNSVLLVSNLNPER.V	2
step05.20942.20942.2	3.1001	0.3224	2040.561	2040.3501	1	1049.8	55.9%	1	R.VTPQSLFILFGVYGDVQR.V	2

gi|155030232|ref|NP_0

13.2%

1130

119700

4.3

proline-, glutamic acid- and leucine-rich protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.7933.7933.2	2.5107	0.4218	1303.422	1303.4521	1	682.9	62.5%	3	R.TGSAVAPVHPPNR.S	2
*	step03.15674.15674.2	3.2194	0.2951	1150.22	1150.3544	1	1139.1	88.9%	2	R.YAAQLPALFR.D	2
*	step05.20950.20951.3	4.3402	0.2835	3328.912	3327.8125	29	380.9	22.4%	1	R.DISM*NHLPGLLTSLLGLRPECEQSALEGMK.A	3
*	step04.14405.14405.2	3.0506	0.5645	1274.803	1275.4786	1	1594.2	87.5%	4	R.LPSLGAGFSQGLK.H	2
*	step03.11446.11446.2	2.672	0.3341	1180.069	1179.311	1	947.1	75.0%	1	K.NISLHGDGPLR.L	2
*	step05.17086.17087.2	4.1804	0.4154	1483.77	1483.7399	1	686.5	87.5%	3	R.LLPQVLNSWSIGR.D	2
*	step02.10226.10226.2	2.5998	0.1246	1773.499	1772.7915	4	204.6	42.9%	1	R.DSLSPGQERPYS#TVR.T	2
*	step06.19866.19866.3	5.6507	0.4996	2884.363	2884.3005	1	2279.4	39.4%	6	R.LHDLVLPLVMGVQQGEVLGSSPYTSSR.C	3
*	step05.17780.17780.3	6.396	0.5572	2900.936	2900.2998	1	2826.0	43.3%	3	R.LHDLVLPLVM*GVQQGEVLGSSPYTSSR.C	3
*	step06.19684.19684.2	3.1839	0.3717	1887.155	1887.1593	1	387.7	53.1%	1	R.CPPPLACALQAFSLGQR.E	2

gi|14269586|ref|NP_11

13.2%

205

24212

10.4

28S ribosomal protein S26, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.21666.21666.2	3.508	0.2783	2064.365	2063.429	1	530.9	50.0%	2	R.VNMPPAVDPAEFFVLMER.Y	2
*	step05.12173.12173.2	3.1602	0.3166	1166.341	1166.314	1	804.9	93.8%	2	R.KNYNWAITR.E	2

U	gi\|4885375\|ref\|NP_005	4	6	13.1%	213	21365	10.9	histone H1.2 [Homo sapiens]
U	gi\|4885379\|ref\|NP_005	4	6	12.8%	219	21865	11.0	histone H1.4 [Homo sapiens]
U	gi\|4885377\|ref\|NP_005	4	6	12.7%	221	22350	11.0	histone H1.3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.12185.12186.1	2.8807	0.4123	1327.529	1327.5518	1	152.7	54.2%	1	R.KASGPPVSELITK.A	1
step05.11926.11926.2	3.95	0.3971	1327.556	1327.5518	1	1112.6	79.2%	2	R.KASGPPVSELITK.A	2
step02.11122.11122.2	2.6888	0.3904	1198.873	1199.3789	1	602.0	72.7%	2	K.ASGPPVSELITK.A	2
step02.7486.7486.2	3.0759	0.4982	1579.736	1579.6965	1	2030.3	78.6%	1	K.ALAAAGYDVEKNNSR.I	2

gi|50301240|ref|NP_00

13.0%

885

100831

8.5

exosome component 10 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.19788.19788.3	5.8881	0.3684	2662.304	2662.9739	1	2548.9	44.3%	2	R.SKVTELEDKFDLLVDANDVILER.V	3 3
	step04.19404.19404.3	3.9315	0.2112	2447.565	2447.7231	1	966.3	33.8%	1	K.VTELEDKFDLLVDANDVILER.V	3 3
	step02.12458.12458.2	2.3081	0.1886	1315.363	1315.4979	1	488.6	62.5%	1	R.VGILLDEASGVNK.N	2 2
	step06.18347.18347.3	4.4594	0.3021	2786.526	2786.2197	1	1347.9	36.5%	2	R.VGILLDEASGVNKNQQPVLPAGLQVPK.T	3 3
	step04.13140.13140.2	3.3281	0.3159	1489.827	1489.7444	1	671.3	65.4%	1	K.NQQPVLPAGLQVPK.T	2 2
	step05.18968.18968.2	2.7668	0.2982	1628.327	1627.9242	1	931.1	65.4%	1	R.SFLGLTCLMQISTR.T	2 2
	step05.16752.16752.2	2.2313	0.0878	1644.837	1643.9236	10	220.0	42.3%	1	R.SFLGLTCLM*QISTR.T	2 2
	step02.18202.18202.2	2.2324	0.1984	1466.521	1465.6301	2	718.5	63.6%	1	R.TEDFIIDTLELR.S	2 2
	step06.19690.19690.2	5.9704	0.5842	1985.517	1985.2118	1	2053.7	71.9%	1	K.DFGLYVVNMFDTHQAAR.L	2 2
	step04.15983.15983.3	4.19	0.3165	1575.42	1575.8575	1	1407.9	56.2%	2	R.IRPLPEEMLSYAR.D	3 3
	step03.15900.15900.2	3.2157	0.4094	1575.846	1575.8575	1	506.1	58.3%	2	R.IRPLPEEMLSYAR.D	2 2
	step03.13091.13091.2	2.2133	0.1551	1592.736	1591.8569	1	186.6	66.7%	1	R.IRPLPEEM*LSYAR.D	2 2
*	step06.17338.17338.2	2.4225	0.1637	1057.989	1058.282	1	600.2	87.5%	2	R.MFLPSLGHR.A	2
*	step06.16185.16185.2	2.762	0.2626	1074.459	1074.2814	1	574.7	81.2%	2	R.M*FLPSLGHR.A	2

Similarities: gi|4505917|ref|NP_002(12:2)

gi|56550033|ref|NP_06

13.0%

577

65125

4.8

protein SHQ1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17694.17694.2	2.4905	0.2012	1205.733	1205.4316	1	567.9	87.5%	1	K.FYAKPYFLR.L	2
*	step06.20963.20963.2	3.0176	0.3405	2197.152	2196.5151	6	153.9	34.2%	2	K.ETPGQHFEGLNMLTALLAPR.K	2
*	step03.490.490.3	5.2344	0.4602	2556.55	2556.7637	1	2266.2	46.2%	2	K.FDPDHYLADFFEDEAIEQILK.Y	3
*	step03.1258.1258.3	5.0391	0.4039	2713.433	2712.0432	1	1132.3	32.3%	1	K.AQLGLELEELEAAALLVQEEETALK.A	3

gi|4506643|ref|NP_000

13.0%

10275

10.4

60S ribosomal protein L37a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12340.12340.2	3.0839	0.415	1406.184	1406.6227	1	1114.5	77.3%	2	R.AVGIWHCGSCMK.T	2
*	step05.10560.10560.2	3.2111	0.2598	1422.358	1422.6221	1	1059.5	81.8%	1	R.AVGIWHCGSCM*K.T	2

U	gi\|187960098\|ref\|NP_0	3	4	12.9%	425	47020	8.3	medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform b precursor [Homo sapiens]
U	gi\|4557231\|ref\|NP_000	3	4	13.1%	421	46588	8.4	medium-chain specific acyl-CoA dehydrogenase, mitochondrial isoform a precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19440.19440.2	3.2789	0.3521	1153.919	1154.3447	1	1488.1	87.5%	1	K.ANWYFLLAR.S	2
step06.15316.15316.2	4.6949	0.5212	1467.63	1466.7141	1	1187.0	82.1%	2	K.TRPVVAAGAVGLAQR.A	2
step03.1292.1292.3	3.7712	0.1775	3225.658	3225.5105	37	443.4	22.5%	1	K.AFAGDIANQLATDAVQILGGNGFNTEYPVEK.L	3

gi|108796661|ref|NP_0

12.9%

249

28660

7.7

spindlin-4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16457.16457.2	3.2461	0.2622	1890.2	1889.2681	1	1068.5	56.2%	1	K.GTVLEQVSVKPTLYIIK.Y	2
*	step05.16723.16723.2	2.7039	0.1701	1705.187	1704.0502	22	277.1	46.4%	1	R.VLALEILPERVPTPR.I	2

gi|310127973|ref|XP_0

12.9%

186

20454

9.4

PREDICTED: u2 small nuclear ribonucleoprotein A'-like, partial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.11170.11170.2	2.7859	0.1966	1347.574	1346.5137	1	811.9	70.8%	2	K.TFNPGAGLPTDKK.K	2 2
	step03.10942.10942.2	2.7343	0.1714	1126.405	1126.2913	1	1308.7	90.0%	2	K.GLLQSGQIPGR.E	2 2

Similarities: gi|50593002|ref|NP_00(2:0)

gi|10863945|ref|NP_06

12.8%

732

82705

5.8

X-ray repair cross-complementing protein 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13400.13400.2	2.7973	0.3948	1122.081	1122.4092	1	1070.6	87.5%	1	K.KVITMFVQR.Q	2
*	step04.20118.20118.2	4.4909	0.4091	1916.828	1916.1844	1	1574.4	80.0%	3	R.HLMLPDFDLLEDIESK.I	2
*	step02.20417.20417.2	3.6456	0.4301	1932.036	1932.1838	1	1175.0	63.3%	2	R.HLM*LPDFDLLEDIESK.I	2
*	step06.23075.23075.3	4.2963	0.515	2741.314	2741.068	1	1204.9	38.0%	1	R.DDEAAAVALSSLIHALDDLDM*VAIVR.Y	3
*	step05.13495.13495.2	2.6419	0.267	1379.709	1378.6038	1	664.1	66.7%	1	R.ANPQVGVAFPHIK.H	2
*	step02.21294.21294.3	4.5	0.3809	2322.129	2322.6208	1	2786.0	45.2%	2	K.YAPTEAQLNAVDALIDSMSLAK.K	3
*	step02.21275.21275.2	4.7217	0.5912	2322.131	2322.6208	1	1056.1	50.0%	1	K.YAPTEAQLNAVDALIDSMSLAK.K	2
*	step06.17343.17343.2	2.475	0.2603	1087.018	1087.2933	1	761.6	85.7%	2	R.LFQCLLHR.A	2

gi|38683855|ref|NP_06

12.8%

689

78550

6.4

pentatricopeptide repeat-containing protein 3, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16304.16304.2	2.921	0.4912	1342.256	1342.5697	1	1743.5	83.3%	1	K.VAVLQALASTVNR.D	2
*	step05.16342.16342.3	3.7221	0.2543	2257.978	2257.6123	5	547.1	35.3%	2	R.IFSLMPEKNEHSYCTMIR.G	3
*	step05.15586.15586.3	3.5248	0.229	2274.418	2273.6116	1	619.9	41.2%	1	R.IFSLMPEKNEHSYCTM*IR.G	3
*	step06.17697.17697.2	3.4255	0.4295	1516.473	1516.8097	1	808.2	83.3%	2	K.VKPNLQTFNTILK.C	2
*	step04.1325.1325.2	4.0362	0.4807	1762.489	1762.0839	1	1391.1	75.0%	2	R.SSFIIYDIMNELMGK.R	2
*	step03.446.446.3	3.8569	0.2281	3103.613	3104.4512	3	420.5	25.9%	1	K.VSNSPSQAIEVVELASAFSLPICEGLTQR.V	3

U	gi\|4506055\|ref\|NP_002	4	8	12.8%	351	40590	8.8	cAMP-dependent protein kinase catalytic subunit alpha isoform 1 [Homo sapiens]
U	gi\|46909584\|ref\|NP_99	4	8	13.1%	343	39822	8.7	cAMP-dependent protein kinase catalytic subunit alpha isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.18187.18187.2	3.8532	0.3979	1391.035	1389.7096	1	1376.9	81.8%	3	R.ILQAVNFPFLVK.L	2
step06.18809.18809.2	4.5075	0.4814	1662.935	1662.8702	1	1605.8	76.9%	2	R.FPSHFSSDLKDLLR.N	2 2
step03.14018.14018.2	2.8564	0.1358	1200.387	1200.4132	1	1258.0	88.9%	2	R.NLLQVDLTKR.F	2 2
step05.12233.12233.2	2.2706	0.0807	1029.567	1029.2571	1	981.3	81.2%	1	R.KVEAPFIPK.F	2 2

Similarities: gi|33636738|ref|NP_89(3:1)

gi|163792194|ref|NP_1

12.7%

733

81747

7.9

TRM1-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12700.12700.2	4.275	0.4384	1804.136	1805.108	1	583.9	59.4%	2	K.SSYIAASTAKPPKEILK.E	2
*	step02.22066.22066.3	5.998	0.5509	2550.37	2549.7776	1	1212.7	38.1%	1	R.SFDFIHLDPFGTSVNYLDSAFR.N	3
*	step04.180.180.2	4.7724	0.5288	2182.944	2182.5034	1	1794.0	63.2%	4	K.TAIELGPLWSSSLFNTGFLK.R	2
*	step04.19183.19183.3	3.7142	0.4102	2111.765	2111.4502	1	442.4	36.8%	1	R.MLFESLHHGLDDIQTLIK.T	3
*	step06.19997.19997.2	3.2634	0.2104	2111.934	2111.4502	1	595.6	47.1%	1	R.MLFESLHHGLDDIQTLIK.T	2
*	step04.13978.13978.3	4.2999	0.4667	1977.237	1977.1246	1	896.7	48.3%	1	K.TDVSTEHPPFYYNIHR.H	3

U	gi\|47458043\|ref\|NP_99	3	7	12.7%	385	42984	7.2	armadillo repeat-containing protein 8 isoform 3 [Homo sapiens]
U	gi\|47458045\|ref\|NP_05	3	7	12.7%	385	42984	7.2	armadillo repeat-containing protein 8 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14650.14650.2	4.1989	0.4018	1123.322	1123.3737	1	1983.0	90.0%	4	K.ANLIVLGAVPR.L	2 2
step06.22345.22345.2	4.1438	0.4503	2319.089	2317.7468	1	1105.4	57.5%	1	K.SLLDCHIIPALLQGLLSPDLK.F	2 2
step06.1090.1090.2	3.1337	0.3177	1939.967	1939.2643	1	400.8	53.1%	2	R.IASITDHLIAM*LADYFK.Y	2 2

Similarities: gi|32526896|ref|NP_05(3:0)

gi|40538736|ref|NP_06

620

67257

6.8

ran-binding protein 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10162.10162.2	3.2512	0.5217	1626.523	1626.8379	1	715.3	80.8%	1	R.LYPAVNQQETPLPR.S	2
*	step03.12886.12886.2	3.4788	0.43	1641.464	1641.8094	1	782.4	65.4%	1	K.DKYNYIGLSQGNLR.V	2
	step06.18163.18165.2	2.7202	0.2075	1938.044	1938.2081	1	581.1	50.0%	1	R.ATHPIPAACGIYYFEVK.I	2 2
*	step05.11866.11867.2	4.4059	0.5772	1473.037	1472.6674	1	1407.2	83.3%	1	K.VQGTVHCFPISAR.L	2
*	step02.15977.15977.2	2.3741	0.1226	2055.776	2055.3118	3	176.8	36.1%	1	R.EPVCAALNSAILESQNLPK.Q	2

Similarities: gi|39812378|ref|NP_00(1:4)

gi|148491070|ref|NP_0

591

66690

6.5

CTP synthase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20041.20041.2	2.8369	0.2576	2123.782	2123.464	1	354.8	44.1%	2	K.TVQVVPHITDAIQEWVMR.Q	2
*	step04.16915.16915.3	4.9023	0.3092	2807.988	2807.1614	1	1411.9	39.8%	1	K.ISMFCHVEPEQVICVHDVSSIYR.V	3
*	step03.74.74.2	3.4315	0.3725	1890.18	1891.1995	1	1447.7	66.7%	1	R.VPLLLEEQGVVDYFLR.R	2
*	step06.17435.17435.2	3.8674	0.5107	1626.603	1626.8778	1	1128.5	73.3%	2	K.LCSAHGVLVPGGFGVR.G	2

gi|115527078|ref|NP_0

258

29207

6.8

spindlin-3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17863.17863.2	4.727	0.4624	2047.561	2048.4373	1	1615.7	61.8%	1	R.TGMVIHQVEAKPSVYFIK.F	2 2
step06.17328.17328.3	3.8195	0.4319	2064.664	2064.4365	1	1054.9	42.6%	1	R.TGM*VIHQVEAKPSVYFIK.F	3 3
step06.17363.17363.2	4.3836	0.49	2064.719	2064.4365	1	644.7	64.7%	1	R.TGM*VIHQVEAKPSVYFIK.F	2 2
step05.18137.18137.2	3.7155	0.4345	1789.344	1789.9641	1	1390.6	69.2%	1	K.FDDDFHIYVYDLVK.T	2 2 2
step04.18201.18201.3	3.8998	0.3809	1789.997	1789.9641	1	795.8	48.1%	2	K.FDDDFHIYVYDLVK.T	3 3 3

Similarities: gi|112293285|ref|NP_0(5:0)
gi|117606320|ref|NP_0(2:3)

gi|31563374|ref|NP_85

226

23735

5.2

eukaryotic translation initiation factor 6 isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.10877.10877.2	3.3242	0.3819	1647.462	1647.7545	1	966.3	65.4%	1	R.ASFENNCEIGCFAK.L	2 2
	step02.8189.8189.2	3.7309	0.4014	1519.46	1519.706	1	1279.0	84.6%	2	K.LNEAQPSTIATSMR.D	2 2

Similarities: gi|31563378|ref|NP_85(2:0)

gi|4505917|ref|NP_002

12.3%

860

98089

8.4

exosome component 10 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.19788.19788.3	5.8881	0.3684	2662.304	2662.9739	1	2548.9	44.3%	2	R.SKVTELEDKFDLLVDANDVILER.V	3 3
step04.19404.19404.3	3.9315	0.2112	2447.565	2447.7231	1	966.3	33.8%	1	K.VTELEDKFDLLVDANDVILER.V	3 3
step02.12458.12458.2	2.3081	0.1886	1315.363	1315.4979	1	488.6	62.5%	1	R.VGILLDEASGVNK.N	2 2
step06.18347.18347.3	4.4594	0.3021	2786.526	2786.2197	1	1347.9	36.5%	2	R.VGILLDEASGVNKNQQPVLPAGLQVPK.T	3 3
step04.13140.13140.2	3.3281	0.3159	1489.827	1489.7444	1	671.3	65.4%	1	K.NQQPVLPAGLQVPK.T	2 2
step05.18968.18968.2	2.7668	0.2982	1628.327	1627.9242	1	931.1	65.4%	1	R.SFLGLTCLMQISTR.T	2 2
step05.16752.16752.2	2.2313	0.0878	1644.837	1643.9236	10	220.0	42.3%	1	R.SFLGLTCLM*QISTR.T	2 2
step02.18202.18202.2	2.2324	0.1984	1466.521	1465.6301	2	718.5	63.6%	1	R.TEDFIIDTLELR.S	2 2
step06.19690.19690.2	5.9704	0.5842	1985.517	1985.2118	1	2053.7	71.9%	1	K.DFGLYVVNMFDTHQAAR.L	2 2
step04.15983.15983.3	4.19	0.3165	1575.42	1575.8575	1	1407.9	56.2%	2	R.IRPLPEEMLSYAR.D	3 3
step03.15900.15900.2	3.2157	0.4094	1575.846	1575.8575	1	506.1	58.3%	2	R.IRPLPEEMLSYAR.D	2 2
step03.13091.13091.2	2.2133	0.1551	1592.736	1591.8569	1	186.6	66.7%	1	R.IRPLPEEM*LSYAR.D	2 2

Similarities: gi|50301240|ref|NP_00(12:0)

gi|20149594|ref|NP_03

12.3%

724

83264

5.0

heat shock protein HSP 90-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.13277.13277.2	2.2248	0.2831	1243.565	1243.4349	2	538.6	59.1%	1	K.ADLINNLGTIAK.S	2 2
*	step06.19342.19342.2	4.8042	0.4272	1809.583	1810.0848	1	1794.6	85.7%	6	K.HSQFIGYPITLYLEK.E	2
*	step02.1779.1779.2	3.5316	0.3669	1848.893	1848.9005	1	855.1	60.7%	3	R.NPDDITQEEYGEFYK.S	2
	step02.13506.13506.2	3.7826	0.3669	1528.368	1528.648	1	756.8	66.7%	2	K.SLTNDWEDHLAVK.H	2 2
*	step04.15447.15447.1	2.0799	0.1398	829.614	830.0523	11	435.4	66.7%	1	R.ALLFIPR.R	1
*	step06.17920.17920.2	3.0518	0.114	1365.194	1365.5619	2	818.4	75.0%	2	R.RAPFDLFENKK.K	2
*	step05.14840.14840.2	5.0633	0.4155	1911.875	1912.182	1	1478.0	76.7%	2	K.KHLEINPDHPIVETLR.Q	2

Similarities: gi|153792590|ref|NP_0(2:5)

gi|63055057|ref|NP_00

12.2%

376

42003

5.6

beta-actin-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17753.17753.3	4.6351	0.2964	3213.705	3213.6526	3	925.7	28.4%	2	R.TTGIVM*DSGDGVTHIVPIYEGYALPHAILR.L	3
	step02.14016.14016.2	3.5943	0.2628	1791.424	1791.94	1	1565.0	76.7%	1	R.SYELPDGQVITIGNER.F	2 2 2 2 2

Similarities: gi|4501885|ref|NP_001(1:1)
gi|4501881|ref|NP_001(1:1)
gi|213688375|ref|NP_0(1:1)
gi|134133226|ref|NP_0(1:1)

U	gi\|14141166\|ref\|NP_11	2	5	12.2%	362	38222	6.8	poly(rC)-binding protein 2 isoform b [Homo sapiens]
U	gi\|193083114\|ref\|NP_0	2	5	13.8%	318	33497	8.2	poly(rC)-binding protein 2 isoform g [Homo sapiens]
U	gi\|193083112\|ref\|NP_0	2	5	13.1%	335	35347	8.0	poly(rC)-binding protein 2 isoform f [Homo sapiens]
U	gi\|193083110\|ref\|NP_0	2	5	12.2%	361	38151	6.8	poly(rC)-binding protein 2 isoform e [Homo sapiens]
U	gi\|193083108\|ref\|NP_0	2	5	12.1%	365	38580	6.8	poly(rC)-binding protein 2 isoform d [Homo sapiens]
U	gi\|148833484\|ref\|NP_0	2	5	13.3%	331	34917	8.0	poly(rC)-binding protein 2 isoform c [Homo sapiens]
U	gi\|14141168\|ref\|NP_00	2	5	12.0%	366	38651	6.8	poly(rC)-binding protein 2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15874.15874.2	3.3078	0.3631	1359.497	1359.6387	1	945.1	75.0%	4	R.IITLAGPTNAIFK.A	2
	step05.20305.20305.3	3.7765	0.3947	3369.817	3369.8127	1	682.7	28.3%	1	K.AFAMIIDKLEEDISSSM*TNSTAASRPPVTLR.L	3

gi|6005860|ref|NP_009

12.2%

123

14551

11.0

60S ribosomal protein L35 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11585.11585.2	4.0631	0.4876	1656.243	1656.9087	1	1823.2	84.6%	3	R.VLTVINQTQKENLR.K	2
*	step05.12084.12084.2	3.8896	0.4729	1784.651	1785.0817	1	1071.7	75.0%	2	R.VLTVINQTQKENLRK.F	2

U	gi\|25092737\|ref\|NP_73	3	6	12.2%	131	14233	10.9	histone H2A type 1-A [Homo sapiens]
U	gi\|4504255\|ref\|NP_002	3	6	12.5%	128	13553	10.6	histone H2A.Z [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.12281.12281.1	1.9196	0.1569	944.699	945.1002	13	247.0	56.2%	2	R.AGLQFPVGR.I	1 1 1 1 1
step03.12248.12248.2	3.1352	0.2058	945.084	945.1002	1	766.3	81.2%	2	R.AGLQFPVGR.I	2 2 2 2 2
step05.12773.12773.2	2.7622	0.2776	851.278	851.0316	1	774.7	100.0%	2	R.HLQLAIR.N	2 2 2 2 2

gi|23111018|ref|NP_69

12.1%

852

94370

6.7

RNA-binding protein 10 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.17168.17168.2	3.918	0.4028	1724.883	1725.8849	1	1981.5	82.1%	6	R.GFAFVEFSHLQDATR.W	2 2
step03.14674.14674.2	5.1893	0.5195	1768.969	1770.0059	1	1838.5	85.7%	4	R.WMEANQHSLNILGQK.V	2 2
step03.13768.13768.2	4.8132	0.4511	1785.672	1786.0052	1	1011.7	78.6%	2	R.WM*EANQHSLNILGQK.V	2 2
step02.8675.8675.2	2.6673	0.2399	1191.607	1192.2968	1	727.6	87.5%	2	K.INEDWLCNK.C	2 2
step02.7972.7972.2	2.4325	0.2335	1329.038	1329.4846	1	455.1	68.2%	1	K.SEAEQKLPLGTR.L	2 2
step02.8385.8385.2	3.6709	0.4483	1198.066	1198.3542	1	1142.7	90.0%	2	R.LDQQTLPLGGR.E	2 2
step06.19806.19806.3	3.796	0.3954	2844.78	2845.1812	1	1406.3	31.7%	3	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	3 3
step05.18914.18914.2	2.7454	0.3877	2845.189	2845.1812	1	247.8	36.5%	1	R.NLNPHSTM*DSILGALAPYAVLSSSNVR.V	2 2
step01.11978.11978.2	2.5481	0.1546	1440.019	1439.5496	1	436.8	57.7%	1	R.ESATADAGYAILEK.K	2 2

Similarities: gi|20127479|ref|NP_00(9:0)

U	gi\|301171467\|ref\|NP_0	6	9	12.1%	661	73156	7.2	ATP-dependent RNA helicase DDX3X isoform 2 [Homo sapiens]
U	gi\|87196351\|ref\|NP_00	6	9	12.1%	662	73244	7.2	ATP-dependent RNA helicase DDX3X isoform 1 [Homo sapiens]
U	gi\|301171475\|ref\|NP_0	6	9	12.4%	646	71355	6.6	ATP-dependent RNA helicase DDX3X isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.1067.1067.2	3.9976	0.4926	2333.434	2333.6682	1	1843.3	59.5%	1	K.TAAFLLPILSQIYSDGPGEALR.A	2
step03.1000.1000.3	5.7445	0.4913	2334.506	2333.6682	1	2758.6	46.4%	2	K.TAAFLLPILSQIYSDGPGEALR.A	3
step06.17940.17940.2	3.1702	0.317	1487.322	1486.7837	1	1043.9	75.0%	1	R.KQYPISLVLAPTR.E	2 2
step05.12840.12840.2	4.3905	0.4549	1888.904	1889.1418	1	962.8	65.6%	2	R.VRPCVVYGGADIGQQIR.D	2 2
step05.10751.10751.2	2.3278	0.2674	1181.662	1181.3635	3	545.9	60.0%	1	R.GCHLLVATPGR.L	2 2
step04.18065.18065.3	4.6034	0.3364	2084.259	2084.2766	1	1121.5	46.9%	2	K.HVINFDLPSDIEEYVHR.I	3 3

Similarities: gi|13514809|ref|NP_00(4:2)

U	gi\|35493811\|ref\|NP_90	4	7	12.1%	530	59380	10.1	RNA-binding protein 39 isoform a [Homo sapiens]
U	gi\|4757926\|ref\|NP_004	4	7	12.2%	524	58657	10.1	RNA-binding protein 39 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15235.15235.2	2.6155	0.2088	865.155	865.05505	1	511.8	85.7%	2	K.IGLPHSIK.L	2
step03.19738.19738.3	4.5319	0.3841	2393.526	2392.7356	1	1632.9	35.2%	1	K.GIAYVEFVDVSSVPLAIGLTGQR.V	3
step05.18224.18224.2	2.3343	0.2255	1909.485	1909.1984	2	345.1	46.7%	1	R.LYVGSLHFNITEDMLR.G	2
step05.17983.17983.2	4.6815	0.5366	1693.012	1692.9377	1	1439.3	65.6%	3	K.CPSIAAAIAAVNALHGR.W	2

gi|24307971|ref|NP_05

12.1%

464

54003

6.8

serine/threonine-protein kinase 38-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.13180.13180.2	3.1215	0.4584	1210.587	1211.3832	1	1815.2	90.0%	1	K.LSDFGLCTGLK.K	2 2
	step04.13639.13639.2	2.7244	0.3592	1339.934	1339.556	1	711.9	72.7%	2	K.LSDFGLCTGLKK.A	2 2
*	step04.13482.13482.2	3.7188	0.3958	2078.992	2079.2388	1	535.3	52.9%	2	R.NLTHNPPSDFSFQNMNSK.R	2
*	step03.16910.16910.2	4.2942	0.4641	1726.655	1726.8746	1	1210.6	76.9%	2	K.GHPFFEGVDWEHIR.E	2
*	step04.16950.16950.3	3.8855	0.3876	1727.079	1726.8746	1	682.4	55.8%	3	K.GHPFFEGVDWEHIR.E	3
*	step06.18364.18364.2	4.1146	0.3883	1564.463	1564.765	1	1536.3	81.8%	2	K.SKDWVFLNYTYK.R	2

Similarities: gi|6005814|ref|NP_009(2:4)

gi|21265040|ref|NP_05

12.1%

206

23641

9.9

39S ribosomal protein L22, mitochondrial isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12881.12881.2	2.2546	0.3332	1366.306	1366.5897	1	520.6	72.7%	1	K.IVYPPQLPGEPR.R	2
	step03.8352.8352.2	2.9787	0.4458	1354.283	1354.5757	1	1249.6	75.0%	3	K.LVEGPPPPPEPPK.T	2

gi|57863269|ref|NP_05

12.0%

758

84428

9.8

ribosomal RNA processing protein 1 homolog B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19218.19218.2	4.3962	0.357	1641.696	1640.8599	1	1415.6	83.3%	5	R.FHFIDIYLDELSK.V	2
*	step02.15734.15734.2	3.2443	0.2622	2334.473	2335.462	1	454.7	44.7%	1	R.GRDDCGTFEDTGPLLQFDYK.A	2
*	step05.12742.12742.2	4.4767	0.3324	1642.319	1642.8723	1	1143.7	73.3%	2	K.KAGPGSLELCGLPSQK.T	2
*	step02.11682.11682.2	2.3114	0.1258	1514.78	1514.6993	5	442.9	50.0%	1	K.AGPGSLELCGLPSQK.T	2
*	step06.13914.13914.2	3.2095	0.3948	1605.662	1605.7771	1	676.5	60.0%	4	K.SSTATHPPGPAVQLNK.T	2
*	step03.10470.10470.2	2.5042	0.3224	1114.427	1114.2772	1	723.3	70.0%	1	K.SILVSPTGPSR.V	2
*	step05.13775.13775.2	2.9223	0.4151	1678.773	1678.9559	1	591.6	64.3%	1	R.VAFDPEQKPLHGVLK.T	2

gi|58761484|ref|NP_00

12.0%

507

56431

6.5

T-complex protein 1 subunit gamma isoform c [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.1046.1046.3	6.6556	0.4963	3419.417	3419.9216	1	1225.5	34.3%	2	R.ILQMEEEYIQQLCEDIIQLKPDVVITEK.G	3 3
step05.492.492.3	3.619	0.4228	3435.727	3435.921	5	584.6	24.1%	1	R.ILQM*EEEYIQQLCEDIIQLKPDVVITEK.G	3 3
step04.15453.15453.2	3.2693	0.4534	1404.754	1404.6199	1	1350.5	72.7%	4	K.GISDLAQHYLMR.A	2 2
step03.14522.14522.2	2.6053	0.4285	1421.937	1420.6193	1	427.6	63.6%	1	K.GISDLAQHYLM*R.A	2 2
step02.8578.8578.2	2.5057	0.3484	1235.308	1235.3898	1	752.4	77.8%	1	R.NLQDAMQVCR.N	2 2
step03.16432.16432.2	2.8176	0.2225	1186.923	1186.4265	1	770.6	90.0%	1	K.TAVETAVLLLR.I	2 2

Similarities: gi|63162572|ref|NP_00(6:0)

gi|56676391|ref|NP_05

12.0%

357

41228

5.5

activating signal cointegrator 1 complex subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13726.13726.3	4.497	0.4231	2234.172	2234.4983	1	859.8	38.8%	2	K.TSISIPKPGQDGEIVITGQHR.N	3
*	step05.17280.17280.2	3.2104	0.4137	1349.603	1349.5607	1	986.0	80.0%	2	R.TRIDVLLDTFR.R	2
*	step05.16026.16026.2	2.3804	0.2719	1303.593	1303.5587	1	648.8	65.0%	2	K.LHATVMNTLFR.K	2

gi|157694511|ref|NP_0

11.9%

749

84905

5.6

nucleolar complex protein 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12726.12726.2	2.9275	0.2439	1430.592	1430.6987	1	654.2	70.8%	2	K.KNSVPVTVAMVER.W	2
*	step05.14750.14750.2	3.0066	0.3207	1246.491	1246.4421	1	810.7	88.9%	2	K.LFHEVVQAFR.A	2
*	step06.19174.19174.2	3.8043	0.417	1019.087	1018.2774	1	1342.0	93.8%	3	R.VLAFLVLSR.V	2
*	step06.1312.1312.3	4.2428	0.2628	2838.896	2839.356	1	1137.5	31.7%	2	R.VLSTAGPSEALQPLVYPLAQVIIGCIK.L	3
*	step06.18238.18238.2	2.6426	0.2675	1464.705	1464.7982	1	566.8	75.0%	1	R.MSSKPINFSVILK.L	2
*	step05.16680.16680.3	4.8789	0.3656	2123.926	2123.356	1	2177.3	53.1%	1	K.LTREEGTPLTLYYSHWR.K	3

U	gi\|66346679\|ref\|NP_00	6	14	11.8%	408	44965	8.6	plasminogen activator inhibitor 1 RNA-binding protein isoform 1 [Homo sapiens]
U	gi\|66346683\|ref\|NP_00	6	14	12.2%	393	43135	8.4	plasminogen activator inhibitor 1 RNA-binding protein isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.1803.1803.2	5.0253	0.3981	1945.282	1945.0713	1	2106.3	80.0%	4	R.FDQLFDDESDPFEVLK.A	2 2
step06.15191.15191.2	2.3408	0.2238	1478.922	1478.7615	3	703.5	65.4%	2	R.KNPLPPSVGVVDKK.E	2 2
step06.14885.14885.3	3.875	0.1973	1479.121	1478.7615	1	1470.5	55.8%	2	R.KNPLPPSVGVVDKK.E	3 3
step05.10063.10063.2	2.4768	0.3838	1349.883	1350.5886	1	453.4	70.8%	3	K.NPLPPSVGVVDKK.E	2 2
step04.11197.11197.2	2.9796	0.3794	1113.08	1113.2046	1	951.9	88.9%	1	R.SSFSHYSGLK.H	2
step06.14897.14897.2	2.5173	0.2443	977.173	977.1423	1	516.4	85.7%	2	R.AKVEFNIR.K	2 2

Similarities: gi|66346681|ref|NP_00(5:1)

gi|52632383|ref|NP_00

11.7%

589

64133

8.2

heterogeneous nuclear ribonucleoprotein L isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23499.23499.3	4.4364	0.2657	3089.205	3089.5913	28	502.1	23.2%	1	R.GLIDGVVEADLVEALQEFGPISYVVVMPK.K	3
	step02.8015.8015.3	5.2935	0.5494	2891.172	2891.9172	1	1718.6	37.0%	1	K.NDQDTWDYTNPNLSGQGDPGSNPNKR.Q	3 3
	step05.14377.14377.2	3.0176	0.299	1635.076	1635.8716	1	637.5	69.2%	2	R.AITHLNNNFMFGQK.L	2 2

Similarities: gi|52632385|ref|NP_00(2:1)

U	gi\|31542947\|ref\|NP_00	7	7	11.7%	573	61055	5.9	60 kDa heat shock protein, mitochondrial [Homo sapiens]
U	gi\|41399285\|ref\|NP_95	7	7	11.7%	573	61055	5.9	60 kDa heat shock protein, mitochondrial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.2027.2027.2	2.6443	0.0905	1185.296	1184.3707	7	541.4	70.0%	1	K.ISKGANPVEIR.R	2
step02.7358.7358.1	2.4606	0.2995	1185.667	1184.3707	14	81.7	50.0%	1	K.ISKGANPVEIR.R	1
step06.21130.21130.2	4.0816	0.3775	1557.602	1557.9236	1	1940.0	71.4%	1	R.GVMLAVDAVIAELKK.Q	2
step05.17024.17024.2	3.0846	0.3604	1919.698	1920.2024	1	297.9	38.2%	1	K.ISSIQSIVPALEIANAHR.K	2
step05.17050.17050.3	3.6372	0.3774	1920.235	1920.2024	1	808.7	36.8%	1	K.ISSIQSIVPALEIANAHR.K	3
step02.13596.13596.2	2.615	0.1869	1632.419	1631.9594	4	337.9	39.3%	1	K.VGEVIVTKDDAMLLK.G	2
step04.13397.13397.2	2.7972	0.1192	942.609	942.18097	1	1098.6	92.9%	1	K.IGIEIIKR.T	2

gi|18105007|ref|NP_00

11.6%

2225

242981

6.5

CAD protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17645.17645.2	2.2954	0.3793	2286.643	2286.535	2	193.2	36.8%	1	R.TLHEWLQQHGIPGLQGVDTR.E	2
*	step04.17880.17880.3	4.0288	0.2773	3019.007	3019.441	1	548.6	26.9%	3	K.LVQNGTEPSSLPFLDPNARPLVPEVSIK.T	3
*	step02.13068.13068.3	5.665	0.4537	2682.419	2681.8777	1	1722.2	39.0%	1	R.MAEIGEHVAPSEAANSLEQAQAAAER.L	3
*	step03.17595.17595.2	2.5037	0.3659	1192.177	1192.4758	1	548.5	85.0%	1	K.LALGIPLPELR.N	2
*	step05.11173.11173.2	3.2108	0.2173	1384.408	1384.6432	2	686.6	63.6%	2	K.LRQELGICPAVK.Q	2
*	step02.5081.5081.2	3.6552	0.4071	1560.407	1559.6604	1	1100.5	75.0%	2	R.VLGTSPEAIDSAENR.F	2
*	step03.12156.12156.1	1.8243	0.131	967.638	968.0907	2	245.6	71.4%	1	K.VPQFSFSR.L	1
*	step05.15565.15565.2	2.379	0.1117	1251.262	1250.5122	1	845.8	85.0%	1	K.KNILLTIGSYK.N	2
*	step05.16462.16462.2	3.2965	0.4512	1650.672	1650.9857	1	1623.5	80.0%	4	K.LFVEALGQIGPAPPLK.V	2
*	step05.15856.15856.3	4.2381	0.5087	2543.574	2543.8127	1	758.4	42.9%	2	R.GLPVTCEVAPHHLFLSHDDLER.L	3
*	step03.12899.12899.2	2.581	0.4179	1201.277	1201.3152	1	660.0	72.2%	2	K.AHWTPFEGQK.V	2
*	step03.13654.13654.3	4.6341	0.4054	2509.686	2509.8564	1	857.9	34.1%	2	R.KVAEPELMGTPDGTCYPPPPVPR.Q	3
*	step03.12443.12443.3	4.3553	0.4481	2525.116	2525.8557	1	915.1	34.1%	1	R.KVAEPELM*GTPDGTCYPPPPVPR.Q	3
*	step05.15581.15581.3	4.3345	0.3495	1669.72	1669.8895	1	1490.9	55.8%	1	K.DQMSHLFNVAHTLR.M	3
*	step05.15560.15560.2	4.1559	0.3856	1669.725	1669.8895	1	1364.1	80.8%	1	K.DQMSHLFNVAHTLR.M	2
*	step06.19703.19703.3	5.345	0.3846	2734.307	2735.0603	1	2035.0	40.9%	1	R.FGSTQEYEACFGQFILTPHIMTR.A	3
*	step06.15378.15378.2	2.7532	0.2403	1098.186	1098.4346	2	1005.3	93.8%	2	K.MVVMHPMPR.V	2
*	step04.17333.17333.2	3.7612	0.4341	1045.252	1045.3247	1	2026.6	94.4%	3	R.MALLATVLGR.F	2
*	step06.20997.20997.2	2.3549	0.5321	1192.062	1192.4994	1	817.1	85.0%	1	R.MALLATVLGRF.-	2
*	step05.19454.19454.2	3.4243	0.4846	1208.491	1208.4988	1	976.3	90.0%	2	R.M*ALLATVLGRF.-	2

gi|5454088|ref|NP_006

11.6%

251

28788

4.1

acidic leucine-rich nuclear phosphoprotein 32 family member B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17163.17163.2	4.4738	0.4081	1420.957	1421.627	1	1029.2	87.5%	2	K.LPNLTHLNLSGNK.L	2
	step02.1971.1971.2	3.542	0.3401	1973.579	1974.1108	1	1112.1	60.0%	1	K.SLDLFNCEVTNLNDYR.E	2 2

Similarities: gi|5453880|ref|NP_006(1:1)

gi|5453880|ref|NP_006

11.6%

249

28585

4.1

acidic leucine-rich nuclear phosphoprotein 32 family member A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12112.12112.2	3.3529	0.3971	1469.315	1468.6339	1	815.4	79.2%	2	K.CPNLTHLNLSGNK.I	2
	step02.1971.1971.2	3.542	0.3401	1973.579	1974.1108	1	1112.1	60.0%	1	K.SLDLFNCEVTNLNDYR.E	2 2

Similarities: gi|5454088|ref|NP_006(1:1)

gi|10801345|ref|NP_03

11.5%

218

25060

4.9

eukaryotic translation initiation factor 3 subunit K [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10923.10923.1	1.8352	0.1395	1321.512	1320.4331	1	136.3	55.0%	1	R.YNPENLATLER.Y	1
*	step04.14350.14350.2	3.9946	0.4451	1631.528	1631.8479	1	882.0	76.9%	2	K.ALTNLPHTDFTLCK.C	2

gi|5454106|ref|NP_006

11.5%

218

21711

6.5

transcription initiation factor TFIID subunit 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.7976.7976.2	3.8763	0.4703	1964.508	1965.117	1	553.0	43.8%	2	K.ASPAGTAGGPGAGAAAGGTGPLAAR.A	2
*	step05.7968.7968.3	3.8519	0.4027	1966.22	1965.117	3	1284.8	37.5%	1	K.ASPAGTAGGPGAGAAAGGTGPLAAR.A	3

gi|53759103|ref|NP_00

11.3%

1037

119938

5.2

importin-8 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13011.13011.2	2.8636	0.3916	1297.544	1297.5688	4	424.9	68.2%	1	R.IIQALKGTIDPK.L	2
*	step05.16178.16178.2	3.0734	0.2384	1144.074	1144.3914	1	1064.8	83.3%	3	K.IINFAPSLLR.I	2
*	step02.18676.18676.3	5.2178	0.4468	3372.908	3371.6858	1	1159.7	28.7%	1	K.NMVTQYWPDREPPPGEAIFPFNIHENDR.Q	3
	step05.19817.19817.3	5.7273	0.4803	2798.889	2798.1597	1	1481.8	34.4%	4	R.MKFDIFEDYASPTTAAQTLLYTAAK.K	3 3
	step06.1407.1407.2	3.3793	0.3355	1650.029	1649.956	1	645.7	56.7%	1	K.DGALHVIGSLAEILLK.K	2 2
	step03.15849.15849.2	3.9248	0.4445	1229.8	1229.5278	1	1604.1	88.9%	4	K.LLEVIILQCK.G	2 2 2
	step03.1152.1152.2	3.5432	0.2982	1900.323	1901.2324	1	753.5	60.0%	1	R.GIDQCIPLFVQLVLER.L	2 2

Similarities: gi|5453998|ref|NP_006(1:6)
gi|300360505|ref|NP_0(4:3)

U	gi\|56118219\|ref\|NP_00	6	14	11.3%	556	61843	8.3	insulin-like growth factor 2 mRNA-binding protein 2 isoform b [Homo sapiens]
U	gi\|64085377\|ref\|NP_00	6	14	10.5%	599	66121	8.5	insulin-like growth factor 2 mRNA-binding protein 2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17644.17644.2	2.5367	0.4053	1180.48	1180.5082	1	757.5	75.0%	2	R.KLPLAGQVLLK.S	2
	step03.12939.12939.2	2.975	0.3584	1457.368	1457.5714	1	607.0	72.7%	1	K.LSGHQFENYSFK.I	2
2	step05.19210.19210.2	3.9637	0.5048	1456.455	1456.7975	1	842.2	84.6%	5	R.ILVPTQFVGAIIGK.E	2 2
2	step05.19195.19195.3	3.8674	0.2859	1457.557	1456.7975	1	1433.4	51.9%	2	R.ILVPTQFVGAIIGK.E	3 3
	step02.13334.13334.2	3.4736	0.4403	1431.261	1431.7251	1	936.0	70.8%	2	R.MVIITGPPEAQFK.A	2 2 2 2
	step06.16623.16623.2	3.3816	0.4855	1477.798	1476.6643	1	1236.2	79.2%	2	R.IIGHFFASQTAQR.K	2

Similarities: gi|56237027|ref|NP_00(1:5)
gi|238624257|ref|NP_0(1:5)
gi|30795212|ref|NP_00(3:3)

U	gi\|33636738\|ref\|NP_89	4	9	11.3%	398	46236	8.7	cAMP-dependent protein kinase catalytic subunit beta isoform 1 [Homo sapiens]
U	gi\|4506057\|ref\|NP_002	4	9	12.8%	351	40623	8.8	cAMP-dependent protein kinase catalytic subunit beta isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.18479.18479.2	3.4365	0.4969	1417.472	1417.723	1	1407.9	81.8%	4	R.ILQAVNFPFLVR.L	2
step06.18809.18809.2	4.5075	0.4814	1662.935	1662.8702	1	1605.8	76.9%	2	R.FPSHFSSDLKDLLR.N	2 2
step03.14018.14018.2	2.8564	0.1358	1200.387	1200.4132	1	1258.0	88.9%	2	R.NLLQVDLTKR.F	2 2
step05.12233.12233.2	2.2706	0.0807	1029.567	1029.2571	1	981.3	81.2%	1	R.KVEAPFIPK.F	2 2

Similarities: gi|4506055|ref|NP_002(3:1)

U	gi\|16905526\|ref\|NP_38	5	8	11.3%	398	45566	8.9	28S ribosomal protein S29, mitochondrial [Homo sapiens]
U	gi\|4758118\|ref\|NP_004	5	8	11.3%	398	45566	8.9	28S ribosomal protein S29, mitochondrial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16474.16474.3	6.0916	0.488	2188.432	2188.4727	1	2862.6	51.4%	2	K.REDKSPIAPEELALVHNLR.K	3
step03.16078.16078.2	4.1632	0.3774	1659.901	1659.911	1	1398.4	78.6%	1	K.SPIAPEELALVHNLR.K	2
step03.16084.16084.3	4.1725	0.3602	1660.471	1659.911	1	1157.1	55.4%	2	K.SPIAPEELALVHNLR.K	3
step04.14434.14434.2	3.0652	0.4648	1260.331	1260.5071	1	1177.2	85.0%	2	R.KAYLPQELLGK.E	2
step02.17762.17762.2	5.2932	0.2913	1718.342	1716.9594	1	1610.0	71.4%	1	K.ELLFLSNANPSLLER.H	2

U	gi\|13027644\|ref\|NP_07	5	18	11.2%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|4507135\|ref\|NP_003	5	18	11.2%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|4507125\|ref\|NP_003	5	18	11.7%	231	23656	10.9	small nuclear ribonucleoprotein-associated proteins B and B' isoform B [Homo sapiens]
U	gi\|38150007\|ref\|NP_93	5	18	11.2%	240	24610	11.2	small nuclear ribonucleoprotein-associated proteins B and B' isoform B' [Homo sapiens]
U	gi\|13027650\|ref\|NP_07	5	18	11.2%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|13027648\|ref\|NP_07	5	18	11.2%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]
U	gi\|13027646\|ref\|NP_07	5	18	11.2%	240	24614	11.2	small nuclear ribonucleoprotein-associated protein N [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.14682.14682.3	5.778	0.4273	2329.566	2329.6052	1	1052.1	47.1%	2	K.AFDKHM*NLILCDCDEFRK.I	3
step04.15277.15277.2	3.0883	0.3505	1851.902	1852.092	2	380.7	53.8%	2	K.HMNLILCDCDEFRK.I	2
step06.18732.18732.2	3.254	0.2492	1039.122	1039.343	1	859.9	93.8%	3	K.RVLGLVLLR.G	2
step05.17002.17002.2	2.9199	0.3325	882.724	883.1566	1	807.7	92.9%	5	R.VLGLVLLR.G	2
step04.17175.17176.1	2.3978	0.169	884.269	883.1566	1	549.6	78.6%	6	R.VLGLVLLR.G	1

gi|4504517|ref|NP_001

11.2%

205

22783

6.4

heat shock protein beta-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17973.17973.2	2.4615	0.2075	988.63	988.2114	1	1035.1	92.9%	1	R.RVPFSLLR.G	2
*	step06.19137.19137.2	3.212	0.3863	1903.773	1904.0355	2	253.7	53.6%	2	R.GPSWDPFRDWYPHSR.L	2

gi|4502643|ref|NP_001

11.1%

531

58024

6.7

T-complex protein 1 subunit zeta isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15926.15926.2	4.7396	0.4352	2315.677	2316.666	1	1233.2	55.0%	2	K.DGNVLLHEMQIQHPTASLIAK.V	2
*	step06.18070.18070.3	4.3796	0.3642	2316.617	2316.666	1	1086.1	35.0%	1	K.DGNVLLHEMQIQHPTASLIAK.V	3
*	step05.13975.13975.2	3.3898	0.3209	2332.198	2332.6653	1	387.1	47.5%	1	K.DGNVLLHEM*QIQHPTASLIAK.V	2
*	step05.13945.13945.3	5.0263	0.4641	2333.481	2332.6653	1	659.3	32.5%	2	K.DGNVLLHEM*QIQHPTASLIAK.V	3
	step06.23305.23305.2	3.5138	0.4358	2206.898	2207.5527	1	1016.7	47.5%	2	K.VHAELADVLTEAVVDSILAIK.K	2 2
	step06.21168.21168.2	2.9177	0.3076	1770.27	1769.1206	1	725.6	56.2%	1	R.AQLGVQAFADALLIIPK.V	2 2

Similarities: gi|58331171|ref|NP_00(2:4)

gi|5031973|ref|NP_005

11.1%

440

48121

5.1

protein disulfide-isomerase A6 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17339.17339.3	6.2997	0.5369	2581.973	2582.8555	1	2569.6	43.8%	2	K.VGAVDADKHHSLGGQYGVQGFPTIK.I	3
*	step03.18126.18126.3	4.7843	0.3494	2647.848	2647.9558	1	1411.0	38.0%	2	R.TCEEHQLCVVAVLPHILDTGAAGR.N	3

gi|9506931|ref|NP_061

547

61590

9.3

probable ATP-dependent RNA helicase DDX56 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16961.16961.2	5.8254	0.5395	2169.48	2169.5093	1	1978.9	72.2%	2	R.LLQAVTDLGWSRPTLIQEK.A	2
*	step05.16967.16967.3	4.1387	0.3473	2169.556	2169.5093	1	1244.7	38.9%	2	R.LLQAVTDLGWSRPTLIQEK.A	3
*	step04.14397.14397.2	3.0193	0.1923	1277.046	1277.5376	1	583.0	85.0%	1	K.ELILHNPVTLK.L	2
*	step02.21030.21030.2	2.8832	0.3197	2348.542	2347.7314	2	242.0	34.2%	1	R.LFLEQFSIPTCVLNGELPLR.S	2
*	step05.15977.15977.2	3.6186	0.3947	1204.52	1204.4452	1	684.1	83.3%	2	R.GPILLPYQFR.M	2

gi|40556376|ref|NP_11

553

60547

9.2

putative oxidoreductase GLYR1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21022.21022.2	3.758	0.2778	1907.677	1906.3221	1	549.1	50.0%	2	K.IGFLGLGLM*GSGIVSNLLK.M	2
*	step06.17871.17871.2	3.5779	0.4293	1706.584	1707.0109	1	1137.3	59.4%	2	K.DLVLGPSGVLQGIRPGK.C	2
*	step06.18030.18030.3	5.3821	0.5071	2594.254	2594.9744	1	850.0	34.4%	2	R.LAIALGDAVNHPTPMAAAANEVYKR.A	3

gi|6912478|ref|NP_036

536

60030

5.0

importin subunit alpha-7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13905.13905.2	2.3961	0.1796	938.685	939.1356	1	531.1	91.7%	2	R.FVEFLKR.N	2 2
*	step06.162.164.3	3.7435	0.0802	3277.46	3278.5286	30	594.3	17.2%	1	R.DYVLNCS#ILNPLLTLLTKSTRLT#MT#R.N	3
	step05.15922.15922.2	3.1157	0.3788	1531.294	1531.8048	1	1038.8	81.8%	2	R.RLVELLMHNDYK.V	2 2 2
	step03.18346.18346.2	3.9367	0.3665	1553.504	1552.8436	1	2172.8	84.6%	2	K.IVQVALNGLENILR.L	2 2 2

Similarities: gi|222144293|ref|NP_0(3:1)
gi|39812229|ref|NP_00(2:2)

U	gi\|14523054\|ref\|NP_11	3	7	11.0%	418	49219	8.1	zinc finger protein 566 isoform 1 [Homo sapiens]
U	gi\|223890215\|ref\|NP_0	3	6	11.0%	418	49219	8.1	zinc finger protein 566 isoform 1 [Homo sapiens]
U	gi\|223890212\|ref\|NP_0	3	7	11.0%	418	49219	8.1	zinc finger protein 566 isoform 1 [Homo sapiens]
U	gi\|223890210\|ref\|NP_0	3	7	11.0%	419	49290	8.1	zinc finger protein 566 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.16422.16422.2	3.1377	0.2936	1864.512	1863.9425	2	490.0	43.6%	2	R.HQRIHTGEKPY#ECK.E	2
step03.13077.13077.2	2.6736	0.1067	1729.418	1729.6516	4	494.8	36.5%	2	K.ECGNAFS#QS#SQLIK.H	2
step05.12676.12677.2	3.5998	0.1421	2331.672	2330.5298	1	990.0	50.0%	3	K.HQRIHTGEKPYECKECEK.A	2

U	gi\|284448556\|ref\|NP_0	2	2	11.0%	445	47974	8.0	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 1 precursor [Homo sapiens]
U	gi\|7657118\|ref\|NP_055	2	2	11.7%	419	45285	8.0	2-amino-3-ketobutyrate coenzyme A ligase, mitochondrial isoform 2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17294.17294.2	2.9614	0.3153	1945.558	1945.2087	1	403.5	37.5%	1	K.ALGGASGGYTTGPGPLVSLLR.Q	2
	step02.14259.14259.3	3.7985	0.1542	3249.163	3248.4016	126	390.3	15.9%	1	R.FRS#KMEAAGFTIS#GAS#HPICPVMLGDAR.L	3

gi|14719402|ref|NP_05

365

41193

10.7

ribosome biogenesis regulatory protein homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.19541.19541.3	4.1264	0.4547	2569.656	2569.855	1	529.0	30.7%	1	K.ELELQFDLGNLLASDRNPPTGLR.C	3
*	step03.7576.7576.2	2.53	0.2164	1015.945	1015.1691	1	398.0	75.0%	2	K.MNSGPPGLGGK.R	2
*	step03.10892.10892.2	2.6248	0.0879	1793.634	1793.927	8	314.6	33.3%	2	K.M*NS#GPPGLGGKRKGGQR.P	2

gi|4508005|ref|NP_003

10.9%

539

62166

5.0

tripartite motif-containing protein 26 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15083.15083.3	3.8953	0.4651	2291.753	2291.5715	1	597.1	36.8%	1	R.SCTTDVRPISGSRPVCPLCK.K	3
*	step03.15874.15874.2	2.4877	0.1398	1813.065	1813.0504	1	380.5	50.0%	1	R.KGDLSLRPEDGVWALR.L	2
*	step03.15858.15858.3	3.8326	0.391	1813.248	1813.0504	1	932.9	46.7%	1	R.KGDLSLRPEDGVWALR.L	3
*	step05.18406.18406.2	2.7073	0.2299	2500.583	2500.7942	14	127.9	31.8%	2	R.LSSSGIWANTSPEAELFPALRPR.R	2

gi|11342680|ref|NP_00

10.9%

376

42293

6.4

beta-centractin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12815.12815.2	2.9757	0.3207	1401.282	1401.5876	1	710.9	75.0%	2	K.YCFPNYVGRPK.H	2 2
	step04.17767.17767.3	5.7508	0.4219	3159.105	3159.5854	1	1218.3	31.9%	3	R.TTGVVLDSGDGVTHAVPIYEGFAMPHSIMR.V	3 3

Similarities: gi|5031569|ref|NP_005(2:0)

U	gi\|4501881\|ref\|NP_001	5	5	10.9%	377	42051	5.4	actin, alpha skeletal muscle [Homo sapiens]
U	gi\|4885049\|ref\|NP_005	5	5	10.9%	377	42019	5.4	actin, alpha cardiac muscle 1 proprotein [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17530.17530.2	3.2004	0.4355	1518.004	1516.6869	1	1062.3	85.0%	1	K.IWHHTFYNELR.V	2 2 2
step02.14016.14016.2	3.5943	0.2628	1791.424	1791.94	1	1565.0	76.7%	1	K.SYELPDGQVITIGNER.F	2 2 2 2 2
step03.12402.12402.2	2.9353	0.1445	1549.61	1549.8818	1	1144.5	69.2%	1	R.MQKEITALAPSTMK.I	2 2 2
step02.8979.8979.1	1.8758	0.2438	1161.523	1162.3821	1	252.7	60.0%	1	K.EITALAPSTMK.I	1 1 1
step02.8931.8931.2	2.3177	0.1916	1162.257	1162.3821	2	651.0	70.0%	1	K.EITALAPSTMK.I	2 2 2

Similarities: gi|4501885|ref|NP_001(5:0)
gi|63055057|ref|NP_00(1:4)
gi|213688375|ref|NP_0(4:1)
gi|134133226|ref|NP_0(2:3)

gi|56181387|ref|NP_00

10.9%

303

34856

5.9

E3 ubiquitin-protein ligase CHIP [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17317.17317.2	2.4849	0.1822	1914.036	1915.0547	16	240.3	34.2%	1	K.GKEEKEGGARLGAGGGSPEK.S	2
*	step03.13043.13043.2	2.7676	0.2918	1600.296	1599.7295	5	240.8	58.3%	1	R.IHQESELHSYLSR.L	2

U	gi\|11024714\|ref\|NP_06	2	10	10.9%	229	25762	7.4	polyubiquitin-B precursor [Homo sapiens]
U	gi\|77539055\|ref\|NP_00	2	5	19.5%	128	14728	9.8	ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
U	gi\|67191208\|ref\|NP_06	2	10	3.6%	685	77029	7.7	polyubiquitin-C [Homo sapiens]
U	gi\|4507761\|ref\|NP_003	2	5	19.5%	128	14728	9.8	ubiquitin-60S ribosomal protein L40 precursor [Homo sapiens]
U	gi\|4506713\|ref\|NP_002	2	5	16.0%	156	17965	9.6	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
U	gi\|294459921\|ref\|NP_0	2	5	16.0%	156	17965	9.6	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]
U	gi\|208022622\|ref\|NP_0	2	5	16.0%	156	17965	9.6	ubiquitin-40S ribosomal protein S27a precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.15194.15194.2	3.7821	0.3544	1789.99	1788.9744	1	567.7	50.0%	8	K.TITLEVEPSDTIENVK.A	2
	step03.14096.14096.2	2.6355	0.2292	1068.265	1068.2517	1	255.9	81.2%	2	K.ESTLHLVLR.L	2

U	gi\|14110414\|ref\|NP_00	4	8	10.8%	306	32835	8.2	heterogeneous nuclear ribonucleoprotein D0 isoform c [Homo sapiens]
U	gi\|51477708\|ref\|NP_00	4	8	11.5%	287	30672	8.4	heterogeneous nuclear ribonucleoprotein D0 isoform d [Homo sapiens]
U	gi\|14110420\|ref\|NP_11	4	8	9.3%	355	38434	7.8	heterogeneous nuclear ribonucleoprotein D0 isoform a [Homo sapiens]
U	gi\|14110417\|ref\|NP_11	4	8	9.8%	336	36272	8.1	heterogeneous nuclear ribonucleoprotein D0 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.7220.7220.2	2.7164	0.4451	1168.379	1168.3151	1	1180.4	88.9%	1	K.FGEVVDCTLK.L	2 2 2
	step04.17871.17871.1	1.9975	0.1364	914.533	915.11255	6	566.5	64.3%	2	R.GFGFVLFK.E	1 1
	step05.17800.17800.2	2.8441	0.4086	915.025	915.11255	1	683.1	85.7%	4	R.GFGFVLFK.E	2 2
	step03.16203.16203.2	4.215	0.4495	1859.815	1860.1356	1	1269.8	67.9%	1	R.GFCFITFKEEEPVKK.I	2

Similarities: gi|55956919|ref|NP_11(1:3)
gi|14110407|ref|NP_11(3:1)

gi|45827798|ref|NP_99

10.8%

286

32595

6.1

serine/threonine-protein phosphatase PP1-alpha catalytic subunit isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.19186.19186.2	2.2707	0.1316	1440.518	1440.7135	3	515.2	65.0%	1	K.IKYPENFFLLR.G	2 2 2
step05.17682.17682.3	4.3279	0.3395	1441.215	1440.7135	1	1284.4	62.5%	2	K.IKYPENFFLLR.G	3 3 3
step05.15062.15062.3	3.9873	0.3215	2405.479	2405.7065	1	854.6	35.5%	1	K.IFCCHGGLSPDLQSMEQIRR.I	3 3 3

Similarities: gi|4506005|ref|NP_002(3:0)
gi|4506003|ref|NP_002(3:0)

gi|20127408|ref|NP_00

10.6%

763

83000

9.0

trifunctional enzyme subunit alpha, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18761.18761.2	4.6128	0.5204	2136.893	2136.481	1	1122.8	54.8%	1	R.KTVLGTPEVLLGALPGAGGTQR.L	2
*	step05.16132.16132.3	4.2453	0.3773	2420.098	2419.826	1	630.7	34.5%	1	K.KM*GLVDQLVEPLGPGLKPPEER.T	3
*	step03.17058.17058.2	2.7246	0.2782	1383.438	1383.6837	1	1060.0	77.3%	1	K.LTAYAMTIPFVR.Q	2
*	step05.14226.14226.2	2.8896	0.3262	1490.537	1490.7893	1	1500.4	79.2%	1	K.ALMGLYHGQVLCK.K	2
*	step04.14331.14331.2	3.4099	0.4411	1392.993	1393.6355	1	1019.2	77.3%	2	K.VIGMHYFSPVDK.M	2

gi|32469511|ref|NP_86

10.6%

480

51618

9.0

B-cell CLL/lymphoma 6 member B protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15041.15041.3	3.6636	0.2135	2916.233	2915.2463	10	554.5	24.0%	1	R.TVHTGEKPYHCSICGARFNRPANLK.T	3
*	step06.13375.13375.2	2.5823	0.1075	960.054	960.1149	1	733.7	78.6%	4	R.FNRPANLK.T	2
	step05.10889.10890.1	2.2535	0.15	970.17	970.15295	1	339.7	71.4%	13	R.FVQVAHLR.A	1 1 1
	step05.11578.11579.2	3.0245	0.2822	971.064	970.15295	1	1001.0	92.9%	24	R.FVQVAHLR.A	2 2 2
	step05.10350.10350.2	3.0297	0.4378	1105.338	1105.272	1	997.1	83.3%	2	R.AHVLIHTGEK.P	2 2 2
	step06.15873.15873.2	2.3077	0.1535	1023.157	1023.2174	2	629.9	78.6%	1	K.SQLRLHLR.Q	2 2 2

Similarities: gi|195927002|ref|NP_0(4:2)
gi|197927147|ref|NP_0(4:2)

U	gi\|310128730\|ref\|XP_0	3	4	10.6%	329	35882	6.7	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 2, partial [Homo sapiens]
U	gi\|310128732\|ref\|XP_0	3	4	10.6%	329	35882	6.7	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 4, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14275.14275.2	5.0326	0.3897	1765.768	1766.032	1	1643.2	79.4%	2	K.KGVNLPGAAVDLPAVSEK.D	2 2 2
step03.16548.16548.3	5.7152	0.3805	2479.518	2478.827	1	1518.9	39.1%	1	K.KGVNLPGAAVDLPAVSEKDIQDLK.F	3 3 3
step03.12862.12862.2	2.3182	0.0921	1141.383	1142.2842	25	321.2	50.0%	1	R.GDLGIEIPAEK.V	2 2

Similarities: gi|33286418|ref|NP_00(3:0)
gi|310128734|ref|XP_0(2:1)

gi|126362983|ref|NP_0

10.6%

282

31484

5.5

RRP15-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14343.14343.2	2.507	0.3579	1202.88	1203.4156	1	1062.0	70.0%	1	R.GVVQLFNAVQK.H	2
*	step03.14276.14276.2	3.0512	0.1963	978.337	978.17017	1	764.6	92.9%	2	K.KDFISVLR.G	2
*	step02.13544.13544.2	2.296	0.1775	1244.417	1245.3662	1	592.0	80.0%	1	K.SEEGPGWTILR.D	2

U	gi\|17986258\|ref\|NP_06	2	5	10.6%	151	16930	4.7	myosin light polypeptide 6 isoform 1 [Homo sapiens]
U	gi\|88999583\|ref\|NP_52	2	5	10.6%	151	16961	4.6	myosin light polypeptide 6 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.20281.20281.2	3.9759	0.4237	1889.071	1889.2501	1	779.7	56.7%	2	K.VLDFEHFLPMLQTVAK.N	2
	step05.18677.18677.2	3.05	0.4007	1904.716	1905.2495	1	393.2	46.7%	3	K.VLDFEHFLPM*LQTVAK.N	2

U	gi\|74099697\|ref\|NP_00	3	3	10.5%	449	49264	6.3	heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]
U	gi\|9624998\|ref\|NP_062	3	3	10.5%	449	49264	6.3	heterogeneous nuclear ribonucleoprotein H2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.16181.16181.2	2.8079	0.2104	1842.468	1842.9838	1	804.8	53.1%	1	R.STGEAFVQFASQEIAEK.A	2 2
step02.11500.11500.2	2.5513	0.3379	1602.242	1602.7039	1	773.4	66.7%	1	R.DLNYCFSGMSDHR.Y	2 2
step02.19221.19221.2	2.3704	0.1213	2030.247	2030.2493	1	322.1	40.6%	1	R.ATENDIYNFFSPLNPMR.V	2

Similarities: gi|5031753|ref|NP_005(2:1)

gi|13899231|ref|NP_11

10.5%

267

30243

10.1

39S ribosomal protein L9, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14222.14222.2	2.479	0.1536	1730.17	1729.0133	2	255.2	53.3%	1	R.LLPQGLAVYASPENKK.L	2
*	step05.12821.12821.2	3.2081	0.392	1249.369	1248.4995	3	1005.4	68.2%	2	K.NLGVVVAPHTLK.L	2

gi|70980549|ref|NP_05

10.4%

1871

208699

8.9

protein RRP5 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11634.11634.2	2.4006	0.2758	1125.366	1126.3213	2	1127.1	81.2%	1	R.ACILCVHPR.T	2
*	step02.19343.19343.2	3.2513	0.3499	2207.974	2208.4927	1	727.3	42.1%	1	R.LSCQNLGAVLDDVPVQGFFK.K	2
*	step03.12028.12028.2	3.1546	0.4512	1105.95	1106.2999	1	977.4	83.3%	2	R.LKDGVLAYAR.L	2
*	step06.16499.16499.2	3.9948	0.4285	1700.912	1700.8785	1	680.1	71.4%	2	K.NVFNPEAFKPGNTHK.C	2
*	step06.19797.19797.2	3.0084	0.3808	1534.809	1535.9431	1	452.9	76.9%	4	R.GLVPPMHLADILMK.N	2
*	step06.18934.18935.2	2.2784	0.1674	1551.325	1551.9425	4	240.4	53.8%	1	R.GLVPPMHLADILM*K.N	2
*	step06.17767.17767.2	2.8859	0.2819	1568.195	1567.9419	1	235.2	57.7%	2	R.GLVPPMHLADILMK.N	2
*	step05.14288.14288.3	4.2011	0.2483	1663.194	1662.9149	1	1626.9	58.9%	1	K.TKDGLEVAVLPHNIR.A	3
*	step05.19612.19612.2	3.7479	0.4358	1802.427	1803.1605	1	622.2	56.7%	3	K.NFSEIHPGMLLIGFVK.S	2
*	step05.18379.18379.2	3.8761	0.4696	1818.444	1819.1599	1	570.0	60.0%	2	K.NFSEIHPGM*LLIGFVK.S	2
*	step03.4358.4358.3	3.6561	0.4468	2391.357	2391.5254	1	554.3	33.3%	1	K.DSETVDEDEEVDPALTVGTIKK.H	3
*	step06.19977.19977.2	3.5253	0.3309	1233.666	1232.5367	1	1542.2	90.0%	5	R.IPLLLTSLSFK.V	2
*	step05.15227.15227.2	3.6938	0.5202	1564.348	1564.7715	1	1229.1	80.8%	3	R.GYVGSIQPHGVFFR.L	2
*	step03.11734.11734.1	2.1608	0.4136	968.614	969.16327	4	188.9	61.1%	1	R.LGPSVVGLAR.Y	1
*	step04.11838.11838.2	2.3273	0.3086	968.948	969.16327	1	1122.5	88.9%	1	R.LGPSVVGLAR.Y	2
*	step02.19310.19310.3	5.2218	0.3468	2930.424	2930.2993	1	1480.9	33.3%	4	K.NLVELSFLPGDTGKPDVLSASLEGQLTK.Q	3
*	step05.16259.16259.2	3.8882	0.5377	1290.475	1290.5349	1	2408.8	90.0%	2	K.VFLHLADIYAK.S	2

gi|186928850|ref|NP_0

10.4%

414

47611

6.2

28S ribosomal protein S27, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15874.15874.3	5.5425	0.5085	2473.103	2472.6914	1	2275.9	46.1%	1	R.LIDNISSREEIDHAEYYLYK.F	3
*	step02.8729.8729.2	2.2682	0.2111	1572.812	1573.684	1	404.4	77.3%	1	R.EEIDHAEYYLYK.F	2
*	step04.17290.17290.2	3.5717	0.4437	1230.484	1230.481	1	2217.5	90.9%	6	R.NFGASLLLPGLK.Q	2
*	step02.16977.16977.2	2.4669	0.3832	1128.006	1128.3438	1	1134.5	85.0%	1	R.EALDVLGAVLK.A	2

gi|74319833|ref|NP_00

2555

291075

5.9

probable ubiquitin carboxyl-terminal hydrolase FAF-Y [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15337.15339.2	2.2243	0.4086	937.759	938.19073	2	608.5	78.6%	1	R.WVVPVLPK.G	2 2
	step05.16072.16072.2	3.4301	0.4498	1519.81	1518.7012	1	765.5	75.0%	6	K.FGTLNGFQILHDR.F	2 2
	step02.12424.12424.2	2.265	0.2997	1106.932	1107.2847	11	579.9	66.7%	1	R.LLQISSFNGK.M	2 2
	step05.10381.10381.2	3.0479	0.5067	1312.618	1312.4558	1	888.2	80.0%	4	K.VISSVSYYTHR.H	2 2
	step02.18276.18276.2	2.7496	0.2092	1828.241	1829.0466	1	652.3	65.6%	1	K.ALTLQDLDNIWAAQAGK.H	2 2
	step05.18431.18431.3	4.0809	0.3847	2507.998	2506.842	1	676.7	33.0%	2	K.ALTLQDLDNIWAAQAGKHEAIVK.N	3 3
	step03.15040.15040.2	3.0616	0.2616	1285.738	1285.5166	1	983.5	75.0%	3	R.TNDKWVIPALK.Q	2 2
	step02.19763.19763.2	2.2117	0.1977	2580.497	2580.7568	11	196.4	23.6%	1	R.Y#S#HVQEVQERLNFLRFLLK.D	2 2
	step06.18630.18630.2	4.6658	0.3657	1888.538	1889.2234	1	1907.8	70.0%	2	R.FLLKDGQLWLCAPQAK.Q	2 2
	step05.19309.19309.2	4.9748	0.4714	1716.9	1717.0026	1	1683.0	75.0%	3	R.AIDLLKEIYTNLGPR.L	2 2
	step06.16038.16038.2	2.599	0.1083	1027.721	1027.2859	3	725.4	81.2%	1	R.KLIGQLNLK.D	2 2
	step03.12477.12477.2	2.8609	0.1566	898.506	899.1129	1	435.8	92.9%	2	K.LIGQLNLK.D	2 2
	step04.12088.12088.2	2.6349	0.2134	1142.32	1142.3737	1	564.4	72.2%	1	K.LIGQLNLKDK.S	2 2
	step06.18186.18186.2	3.6021	0.5296	1313.24	1313.5732	1	1210.3	81.8%	2	K.LLLTAIGYGHVR.A	2 2
*	step05.11353.11353.2	2.3577	0.1303	1476.36	1475.3094	1	639.4	53.3%	1	K.Y#S#GDYFT#LLR.H	2
	step05.19424.19424.3	3.5884	0.283	2548.351	2547.9297	1	1129.3	36.9%	1	K.NAGATCYMNSVIQQLYM*IPSIR.N	3 3
	step03.12296.12296.2	2.9555	0.1837	1092.115	1092.2732	1	1072.5	93.8%	2	R.KEYNIGVLR.H	2 2
	step06.23064.23064.3	4.5614	0.3912	2421.01	2421.6013	1	1650.3	40.0%	8	R.EQHDALEFFNSLVDSLDEALK.A	3 3
	step06.23077.23077.2	5.229	0.5497	2422.849	2421.6013	1	1065.3	55.0%	22	R.EQHDALEFFNSLVDSLDEALK.A	2 2
	step02.8331.8331.2	3.9385	0.4164	1577.417	1577.6709	1	1700.8	80.8%	2	K.GDLLEGANAYHCEK.C	2 2
	step02.11874.11874.2	2.5828	0.0873	1188.262	1187.2454	1	1030.1	92.9%	1	K.RFDYDWER.E	2 2
	step02.15020.15020.2	3.2508	0.3841	1235.46	1235.3284	1	1605.0	93.8%	2	K.FNDYFEFPR.E	2 2
	step02.15998.15998.2	3.4335	0.3486	1178.805	1178.406	1	1798.9	94.4%	2	K.LYSVVSQLIR.C	2 2
	step05.20143.20143.2	4.4402	0.4147	1918.552	1919.1283	1	2199.6	78.6%	2	R.KWTWAVEWLGDELER.R	2 2
	step02.21324.21324.2	5.0568	0.4489	1791.3	1790.9553	1	1932.5	80.8%	3	K.WTWAVEWLGDELER.R	2 2

Similarities: gi|145309309|ref|NP_0(24:1)

gi|42544159|ref|NP_00

858

96865

5.4

heat shock protein 105 kDa [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10174.10174.2	3.703	0.4508	1717.351	1716.8364	1	731.6	71.4%	2	K.NQQITHANNTVSNFK.R	2
*	step04.17928.17928.3	3.8764	0.3118	3283.098	3283.668	44	362.5	21.4%	1	K.LKETAENSLKKPVTDCVISVPSFFTDAER.R	3
	step03.14950.14950.2	3.8498	0.4957	1536.099	1536.7848	1	1964.8	84.6%	2	R.GCALQCAILSPAFK.V	2 2 2
*	step02.11807.11807.2	2.9527	0.3516	1608.047	1607.745	1	1192.2	81.8%	1	K.FICEQDHQNFLR.L	2
*	step05.10348.10348.3	3.6806	0.219	2097.315	2096.407	1	1378.5	45.6%	1	K.IKELNNTCEPVVTQPKPK.I	3

Similarities: gi|38327039|ref|NP_00(1:4)
gi|31541941|ref|NP_05(1:4)

gi|34419635|ref|NP_00

643

71028

6.1

heat shock 70 kDa protein 6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.1400.1400.2	3.8819	0.5418	1489.123	1488.5806	1	1079.7	79.2%	26	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
step02.14919.14919.2	5.0348	0.4407	1689.542	1688.906	1	2130.6	83.3%	3	R.IINEPTAAAIAYGLDR.R	2 2
step02.4887.4887.2	3.6188	0.4887	1676.423	1676.6827	1	1340.6	73.3%	1	K.ATAGDTHLGGEDFDNR.L	2 2 2
step02.15939.15939.2	3.3977	0.3198	1543.098	1543.6992	1	1108.1	81.8%	4	R.ARFEELCSDLFR.S	2 2
step02.1257.1257.2	2.7786	0.2761	1317.258	1316.4347	1	955.0	83.3%	1	R.FEELCSDLFR.S	2 2
step02.14472.14472.1	1.9365	0.1651	1081.389	1082.2336	1	351.8	75.0%	1	K.LLQDFFNGK.E	1 1 1 1
step02.15059.15059.2	2.6762	0.3737	1083.415	1082.2336	1	829.5	87.5%	3	K.LLQDFFNGK.E	2 2 2 2

gi|23308577|ref|NP_00

533

56651

6.7

D-3-phosphoglycerate dehydrogenase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15211.15213.2	2.9036	0.1393	899.941	900.1009	1	1042.6	93.8%	2	K.TLGILGLGR.I	2
*	step02.12239.12239.2	2.8723	0.2497	1100.023	1100.2506	2	1066.5	75.0%	1	R.GGIVDEGALLR.A	2
*	step04.13173.13173.3	4.2733	0.4737	2049.052	2049.2673	1	1305.7	43.1%	2	R.ALVDHENVISCPHLGASTK.E	3
*	step04.13188.13188.2	5.1793	0.4941	2050.607	2049.2673	1	1288.5	63.9%	4	R.ALVDHENVISCPHLGASTK.E	2
*	step03.18264.18264.2	4.4874	0.2505	1626.409	1626.916	1	1513.9	76.7%	5	K.NAGNCLSPAVIVGLLK.E	2
*	step03.18322.18322.3	5.353	0.4756	1627.123	1626.916	1	3447.0	63.3%	4	K.NAGNCLSPAVIVGLLK.E	3

U	gi\|194306567\|ref\|NP_8	2	3	10.3%	319	36105	6.9	replication factor C subunit 5 isoform 2 [Homo sapiens]
U	gi\|6677723\|ref\|NP_031	2	3	9.7%	340	38497	7.2	replication factor C subunit 5 isoform 1 [Homo sapiens]
U	gi\|194306571\|ref\|NP_0	2	3	10.3%	319	36105	6.9	replication factor C subunit 5 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18795.18795.3	5.7202	0.446	2485.192	2484.7932	1	1959.6	41.2%	2	K.YRPQTLNDLISHQDILSTIQK.F	3
	step03.16346.16346.2	2.4158	0.3222	1357.414	1357.6462	1	714.1	77.3%	1	R.FGPLTPELMVPR.L	2

gi|149999611|ref|NP_0

136

14570

10.0

signal recognition particle 14 kDa protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15991.15991.2	3.443	0.3376	1714.18	1713.9822	1	446.7	65.4%	1	K.EVNKFQMAYSNLLR.A	2
*	step04.15257.15257.2	2.6923	0.2931	1729.786	1729.9816	1	249.0	53.8%	1	K.EVNKFQM*AYSNLLR.A	2

gi|68800360|ref|NP_00

10.2%

322

36637

4.8

epiphycan precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11128.11128.2	3.043	0.1181	1674.597	1673.7861	55	260.8	38.5%	1	K.KINKNDFASLS#DLK.R	2
*	step03.20231.20231.2	2.3607	0.1133	2475.07	2476.4075	1	327.8	25.6%	1	K.RIDLT#S#NLIS#EIDEDAFRK.L	2

gi|47174864|ref|NP_06

10.2%

235

25249

7.6

exosome complex exonuclease RRP46 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13992.13992.2	2.3929	0.1924	1140.995	1140.401	2	1109.8	77.8%	1	K.ATLEVILRPK.I	2
*	step04.13980.13980.2	3.3742	0.3863	1568.691	1567.7655	1	675.6	73.1%	1	R.NTCEAVVLGTLHPR.T	2

U	gi\|16306492\|ref\|NP_20	3	5	10.0%	240	27503	7.1	cell division protein kinase 1 isoform 2 [Homo sapiens]
U	gi\|4502709\|ref\|NP_001	3	5	8.1%	297	34095	8.4	cell division protein kinase 1 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17013.17013.2	3.6297	0.409	1802.377	1803.0109	1	822.4	71.4%	1	K.KPLFHGDSEIDQLFR.I	2
step04.17004.17004.3	4.8844	0.4527	1802.464	1803.0109	1	2489.2	55.4%	2	K.KPLFHGDSEIDQLFR.I	3
step03.12424.12424.2	2.9008	0.1793	1107.24	1107.3513	41	691.3	75.0%	2	K.MLIYDPAKR.I	2

gi|30348954|ref|NP_06

9.9%

1006

110136

6.9

E3 ubiquitin-protein ligase MIB1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16072.16072.3	4.2765	0.3894	2733.868	2733.9292	1	949.7	32.3%	1	K.VTEIQDWSASSPHSAAYVLWDNGAK.N	3
*	step05.15904.15904.3	6.3659	0.5114	2028.924	2029.2476	1	3341.4	58.3%	2	R.AVHHAAFGDEGAVIEVLHR.G	3
*	step06.18073.18073.2	6.4401	0.5287	2029.198	2029.2476	1	2270.0	77.8%	3	R.AVHHAAFGDEGAVIEVLHR.G	2
*	step02.16254.16254.3	6.9641	0.5657	2855.624	2855.0566	1	3172.1	45.0%	2	K.TLLDFGCHPSLQDSEGDTPLHDAISK.K	3
*	step06.17027.17027.2	2.2651	0.11	1253.772	1253.4746	9	414.7	66.7%	1	K.LPRPWIVDEK.K	2
*	step06.16751.16751.2	3.0502	0.483	1325.406	1325.5927	1	1819.4	85.0%	2	R.RVPFIMCCGGK.S	2
*	step02.6440.6440.2	2.4785	0.298	1114.063	1114.2772	1	496.5	68.8%	2	K.LQQQLQDIK.E	2

gi|20806097|ref|NP_07

800

92548

9.2

nucleolar complex protein 3 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18936.18936.3	4.4705	0.4115	2188.611	2188.5957	1	1089.3	36.1%	2	R.TLQTAPEKELIHLLPIKDK.S	3
*	step05.15865.15865.2	3.5571	0.3749	1319.647	1319.6177	1	570.7	85.0%	2	K.ELIHLLPIKDK.S	2
*	step03.18878.18878.2	2.2105	0.1182	2193.878	2193.5256	6	293.0	31.4%	1	K.LVIVSLM*ELFKDITPSY#K.I	2
*	step02.10752.10752.2	3.0102	0.1801	1280.127	1279.4907	1	1084.3	77.8%	2	R.NYEVRPEMLK.T	2
*	step05.12750.12750.2	2.2415	0.1162	986.919	987.24365	9	402.7	71.4%	1	R.ILMHTFPK.T	2
*	step06.17099.17100.2	4.5368	0.3731	2280.965	2280.5686	1	949.1	47.7%	3	R.FAAHLIAGAPSEGSGALKPELSR.R	2

U	gi\|33286418\|ref\|NP_00	4	7	9.8%	531	57937	7.8	pyruvate kinase isozymes M1/M2 isoform M2 [Homo sapiens]
U	gi\|33286422\|ref\|NP_87	4	7	9.8%	531	58062	7.7	pyruvate kinase isozymes M1/M2 isoform M1 [Homo sapiens]
U	gi\|33286420\|ref\|NP_87	4	7	9.8%	531	58062	7.7	pyruvate kinase isozymes M1/M2 isoform M1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14275.14275.2	5.0326	0.3897	1765.768	1766.032	1	1643.2	79.4%	2	K.KGVNLPGAAVDLPAVSEK.D	2 2 2
step03.16548.16548.3	5.7152	0.3805	2479.518	2478.827	1	1518.9	39.1%	1	K.KGVNLPGAAVDLPAVSEKDIQDLK.F	3 3 3
step03.12862.12862.2	2.3182	0.0921	1141.383	1142.2842	25	321.2	50.0%	1	R.GDLGIEIPAEK.V	2 2
step06.19799.19799.2	4.134	0.5681	1878.718	1878.284	1	1422.7	71.9%	3	R.AGKPVICATQMLESMIK.K	2

Similarities: gi|310128730|ref|XP_0(3:1)
gi|310128734|ref|XP_0(2:2)

gi|111955139|ref|NP_1

387

42933

9.0

GTP-binding protein 10 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18261.18261.2	3.1391	0.1922	1372.836	1372.6805	1	851.3	72.7%	1	K.LLTNFLPLKGQK.R	2
	step03.19128.19128.3	3.7366	0.3162	2955.494	2955.3486	1	687.5	27.0%	1	R.TVEFQHIIPISAVTGEGIEELKNCIR.K	3

gi|21735621|ref|NP_00

338

35503

8.7

malate dehydrogenase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15850.15850.2	2.2775	0.105	1524.339	1524.7085	90	257.0	41.0%	1	-.M*LS#ALARPASAALR.R	2
*	step06.19961.19962.2	5.9345	0.5471	1794.223	1794.1715	1	1814.5	69.4%	4	K.VAVLGASGGIGQPLSLLLK.N	2

gi|7661806|ref|NP_054

296

33420

10.0

39S ribosomal protein L15, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11612.11612.2	3.974	0.3655	1326.425	1325.5392	1	1117.3	75.0%	2	R.VSLANLKPNPGSK.K	2
*	step05.17533.17533.2	3.8493	0.4561	1943.647	1944.2592	1	1302.1	70.0%	2	R.KYGYILPDITKDELFK.M	2

U	gi\|117606320\|ref\|NP_0	3	4	9.7%	258	29188	7.2	spindlin-2A [Homo sapiens]
U	gi\|56682949\|ref\|NP_00	3	4	9.7%	258	29158	7.2	spindlin-2B [Homo sapiens]
U	gi\|56682947\|ref\|NP_00	3	4	9.7%	258	29158	7.2	spindlin-2B [Homo sapiens]
U	gi\|56682945\|ref\|NP_00	3	4	9.7%	258	29158	7.2	spindlin-2B [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.8998.8998.2	2.2608	0.3926	1190.537	1191.49	4	549.4	60.0%	1	R.GMVLAQAPIMK.A	2
step05.18137.18137.2	3.7155	0.4345	1789.344	1789.9641	1	1390.6	69.2%	1	K.FDDDFHIYVYDLVK.K	2 2 2
step04.18201.18201.3	3.8998	0.3809	1789.997	1789.9641	1	795.8	48.1%	2	K.FDDDFHIYVYDLVK.K	3 3 3

Similarities: gi|112293285|ref|NP_0(2:1)
gi|115527078|ref|NP_0(2:1)

gi|32526896|ref|NP_05

9.6%

659

73994

6.7

armadillo repeat-containing protein 8 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14650.14650.2	4.1989	0.4018	1123.322	1123.3737	1	1983.0	90.0%	4	K.ANLIVLGAVPR.L	2 2
	step06.22345.22345.2	4.1438	0.4503	2319.089	2317.7468	1	1105.4	57.5%	1	K.SLLDCHIIPALLQGLLSPDLK.F	2 2
	step06.1090.1090.2	3.1337	0.3177	1939.967	1939.2643	1	400.8	53.1%	2	R.IASITDHLIAM*LADYFK.Y	2 2
*	step06.17592.17592.2	3.3772	0.3075	1688.443	1688.9744	1	866.9	65.4%	2	R.TSFQDHAVWKPLMK.V	2

Similarities: gi|47458043|ref|NP_99(3:1)

U	gi\|21735596\|ref\|NP_05	3	10	9.6%	469	51735	5.2	programmed cell death protein 4 isoform 1 [Homo sapiens]
U	gi\|21735598\|ref\|NP_66	3	10	9.8%	458	50576	5.5	programmed cell death protein 4 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.17688.17689.2	3.6358	0.5183	1440.461	1440.7101	1	1202.6	71.4%	5	K.SGVPVLAVSLALEGK.A	2
step04.13813.13813.2	3.5371	0.3925	1199.628	1200.4149	1	1443.7	85.0%	3	R.APQLVGQFIAR.A	2
step05.12506.12506.2	2.5126	0.2198	1984.233	1984.1619	4	283.5	38.9%	2	R.KDSVWGSGGGQQSVNHLVK.E	2

gi|21071032|ref|NP_05

9.5%

622

69838

6.8

probable ATP-dependent RNA helicase DDX41 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12697.12697.1	2.1596	0.1736	787.555	787.9723	1	233.5	83.3%	1	K.FPAAILR.G	1
*	step04.12701.12701.2	2.2389	0.1576	788.014	787.9723	6	665.5	91.7%	1	K.FPAAILR.G	2
*	step04.14164.14164.2	2.2246	0.2225	1659.21	1658.8413	14	291.8	35.9%	1	K.GQRQTLLFS#ATMPK.K	2
*	step05.12763.12763.2	2.8166	0.3914	1353.833	1354.6237	1	563.1	75.0%	4	K.SALVKPVTINVGR.A	2
*	step03.19966.19966.3	3.5838	0.2274	3001.151	3001.3213	1	696.6	31.2%	1	K.GLDFPAIQHVINYDMPEEIENYVHR.I	3

gi|5730023|ref|NP_006

9.5%

463

51157

5.6

ruvB-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15380.15380.2	3.1673	0.3193	1215.271	1215.4945	1	1005.7	80.0%	1	R.RAAGVVLEMIR.E	2
*	step06.18325.18325.3	4.4763	0.3199	2139.231	2139.4001	1	1173.1	41.7%	1	R.IRGTSYQSPHGIPIDLLDR.L	3
*	step04.17280.17280.2	3.2736	0.3967	1579.781	1579.8593	1	940.7	57.7%	1	R.YAIQLITAASLVCR.K	2

U	gi\|212274337\|ref\|NP_0	2	5	9.5%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]
U	gi\|5174445\|ref\|NP_006	2	5	9.5%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]
U	gi\|212274477\|ref\|NP_0	2	5	9.5%	399	45283	7.8	lanC-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.17909.17909.3	3.9291	0.3259	2511.095	2509.7944	66	730.2	28.6%	3	K.IPQSHIQQICETILTSGENLAR.K	3
	step06.17237.17237.2	4.2133	0.4146	1886.974	1887.2058	1	1549.3	80.0%	2	K.LHSLVKPSVDYVCQLK.F	2

U	gi\|66346681\|ref\|NP_00	5	13	9.5%	402	44257	8.7	plasminogen activator inhibitor 1 RNA-binding protein isoform 2 [Homo sapiens]
U	gi\|66346685\|ref\|NP_05	5	13	9.8%	387	42427	8.4	plasminogen activator inhibitor 1 RNA-binding protein isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.1803.1803.2	5.0253	0.3981	1945.282	1945.0713	1	2106.3	80.0%	4	R.FDQLFDDESDPFEVLK.A	2 2
step06.15191.15191.2	2.3408	0.2238	1478.922	1478.7615	3	703.5	65.4%	2	R.KNPLPPSVGVVDKK.E	2 2
step06.14885.14885.3	3.875	0.1973	1479.121	1478.7615	1	1470.5	55.8%	2	R.KNPLPPSVGVVDKK.E	3 3
step05.10063.10063.2	2.4768	0.3838	1349.883	1350.5886	1	453.4	70.8%	3	K.NPLPPSVGVVDKK.E	2 2
step06.14897.14897.2	2.5173	0.2443	977.173	977.1423	1	516.4	85.7%	2	R.AKVEFNIR.K	2 2

Similarities: gi|66346679|ref|NP_00(5:0)

gi|4504183|ref|NP_000

9.5%

210

23356

5.6

glutathione S-transferase P [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18586.18586.2	5.0621	0.5926	2127.877	2127.4292	1	1104.3	68.4%	3	K.ALPGQLKPFETLLSQNQGGK.T	2
*	step06.18574.18574.3	3.67	0.32	2128.33	2127.4292	1	807.5	34.2%	1	K.ALPGQLKPFETLLSQNQGGK.T	3

gi|21361647|ref|NP_00

9.4%

530

58951

6.9

putative adenosylhomocysteinase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13188.13188.2	3.2269	0.3649	1537.464	1537.7045	1	735.0	66.7%	1	R.SQVDHVIWPDGKR.V	2 2
	step03.13234.13234.2	2.7823	0.338	1267.403	1267.498	1	1079.4	83.3%	2	R.YKQDVYLLPK.K	2 2
*	step03.17950.17950.3	4.6439	0.3672	3075.55	3076.3833	5	682.9	29.8%	1	K.KMDEYVASLHLPSFDAHLTELTDDQAK.Y	3

Similarities: gi|195539337|ref|NP_0(2:1)

gi|39780588|ref|NP_06

9.3%

804

91810

7.4

pre-rRNA-processing protein TSR1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18103.18103.3	5.729	0.4471	2692.236	2692.0217	1	1985.0	45.7%	2	R.RAYLFAHAVDFVPSEENNLVGTLK.I	3
*	step02.18684.18684.3	3.7993	0.2367	2536.631	2535.8354	1	1136.1	38.6%	1	R.AYLFAHAVDFVPSEENNLVGTLK.I	3
*	step06.17519.17519.2	3.023	0.2282	1537.315	1537.8077	1	1097.9	70.8%	2	R.LLHIVGYGDFQM*K.Q	2
*	step03.14667.14667.2	3.973	0.4435	1416.478	1416.5657	1	1551.1	90.0%	3	R.IFQFQNFTNTR.K	2
*	step04.14808.14808.2	3.8773	0.5	1507.566	1507.7117	1	1294.7	81.8%	1	K.AKEELIFHCGFR.R	2
*	step02.18504.18504.2	2.3119	0.2059	1890.488	1891.1565	1	306.2	46.4%	1	K.WTYDPYVPEPVPWLK.S	2

U	gi\|28557677\|ref\|NP_11	2	3	9.3%	365	41290	8.7	PHD finger protein 6 isoform 1 [Homo sapiens]
U	gi\|62865858\|ref\|NP_00	2	3	9.3%	365	41290	8.7	PHD finger protein 6 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.12694.12694.2	5.2714	0.5665	2079.762	2080.3665	1	2146.5	70.6%	2	K.LMCSLCHCPGATIGCDVK.T	2
	step05.16392.16392.2	2.8198	0.184	1957.199	1955.9534	18	311.8	31.7%	1	K.CT#LCS#QPGATIGCEIK.A	2

gi|54112117|ref|NP_03

1304

145830

7.1

splicing factor 3B subunit 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12968.12968.2	3.5432	0.4355	2010.716	2011.1841	1	942.9	58.8%	2	K.KLSSWDQAETPGHTPSLR.W	2
*	step05.12944.12944.3	4.2649	0.1926	2011.62	2011.1841	1	1660.6	45.6%	1	K.KLSSWDQAETPGHTPSLR.W	3
*	step06.17839.17839.3	4.9453	0.4826	2390.473	2390.725	1	1353.4	42.9%	2	R.KLTATPTPLGGMTGFHMQTEDR.T	3
*	step06.17088.17088.3	4.3291	0.3528	2405.409	2406.7246	1	647.2	36.9%	2	R.KLTATPTPLGGMTGFHM*QTEDR.T	3
*	step04.20253.20253.2	2.259	0.289	2036.722	2035.3685	1	472.0	43.8%	1	K.ILVVIEPLLIDEDYYAR.V	2
*	step02.19222.19222.2	4.627	0.3741	1839.258	1838.0518	1	1523.8	70.0%	2	R.SLVEIIEHGLVDEQQK.V	2
*	step02.7440.7440.2	2.3633	0.1078	1724.2	1722.8777	5	376.9	50.0%	1	R.IVDDLKDEAEQYRK.M	2
*	step05.11195.11195.2	2.5209	0.2519	1098.072	1098.3444	1	1034.8	77.8%	2	K.AIVNVIGM*HK.M	2
*	step02.6303.6303.2	2.3935	0.2901	1304.455	1303.4407	1	271.0	65.0%	1	K.VQENCIDLVGR.I	2
*	step05.12673.12673.2	2.5809	0.1083	1342.229	1341.5403	4	579.6	59.1%	1	R.RATVNTFGYIAK.A	2

gi|38327039|ref|NP_00

840

94331

5.2

heat shock 70 kDa protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16700.16700.2	5.0634	0.5203	2000.592	1999.2052	1	654.9	63.3%	3	R.KFDEVLVNHFCEEFGK.K	2
*	step05.16736.16736.2	2.9272	0.3021	2126.665	2127.3782	1	371.0	43.8%	1	R.KFDEVLVNHFCEEFGKK.Y	2
	step03.14950.14950.2	3.8498	0.4957	1536.099	1536.7848	1	1964.8	84.6%	2	R.GCALQCAILSPAFK.V	2 2 2
*	step06.19547.19547.2	3.5169	0.3809	1991.242	1992.307	1	967.5	59.4%	2	K.VREFSITDVVPYPISLR.W	2
*	step02.10060.10060.2	3.1026	0.3642	1558.14	1558.6741	1	707.9	62.5%	1	K.FVSEDDRNSFTLK.L	2
*	step06.14958.14958.2	2.2715	0.366	1786.627	1787.0845	1	298.4	46.7%	2	K.ELTSTCSPIISKPKPK.V	2

Similarities: gi|42544159|ref|NP_00(1:5)
gi|31541941|ref|NP_05(1:5)

gi|45333883|ref|NP_69

674

76138

6.1

kelch repeat and BTB domain-containing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13984.13984.2	3.002	0.2447	1419.004	1418.658	1	848.7	77.3%	3	R.RLDLTNCTAILK.F	2 2
	step06.18144.18144.2	2.6811	0.2114	1233.595	1233.4669	1	648.4	83.3%	1	K.EMVIFFGHPR.D	2 2
*	step05.18002.18002.3	5.2666	0.3893	3184.343	3184.525	1	1040.6	31.7%	2	R.DPFLCCDPYSGDLYKVPSPLTCLAHTR.T	3
*	step04.15930.15930.2	3.2712	0.216	1729.669	1729.9971	1	370.8	58.3%	1	R.MFCYDPSHNMWLK.C	2

Similarities: gi|21359972|ref|NP_11(2:2)

gi|310114721|ref|XP_0

477

50568

6.1

PREDICTED: putative tubulin beta-4q chain-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.18610.18610.3	8.4842	0.5422	3441.755	3441.7993	1	4986.2	41.4%	8	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3
2	step02.17018.17018.3	6.608	0.6359	3313.031	3313.6262	1	2685.9	35.5%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLLSK.I	3 3 3 3 3 3
	step02.11320.11320.2	3.0929	0.3358	1130.76	1131.2664	1	905.4	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2
	step05.10818.10818.1	1.8152	0.1126	1258.713	1259.4392	1	313.3	60.0%	1	R.FPGQLNADLRK.L	1 1 1 1 1 1 1 1 1
	step05.11218.11219.2	2.7952	0.2822	1260.2	1259.4392	1	953.1	85.0%	6	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2

gi|13376840|ref|NP_07

305

33581

5.5

WD repeat-containing protein 61 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13509.13509.2	2.7426	0.4061	1177.772	1178.3629	1	959.3	85.0%	2	K.VNIFGVESGKK.E	2
*	step04.15971.15971.3	4.7182	0.3608	2104.8	2105.291	1	1264.4	43.8%	2	R.TCVHTFFDHQDQVWGVK.Y	3

U	gi\|24797095\|ref\|NP_72	2	3	9.2%	316	33341	6.8	pyrroline-5-carboxylate reductase 1, mitochondrial isoform 2 [Homo sapiens]
U	gi\|24797097\|ref\|NP_00	2	3	9.1%	319	33361	7.6	pyrroline-5-carboxylate reductase 1, mitochondrial isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12844.12844.2	3.3004	0.5037	1142.994	1143.3203	1	1197.2	86.4%	2	K.GFTAAGVLAAHK.I	2
	step05.16492.16492.2	2.2986	0.1531	1926.452	1926.0325	120	190.0	29.2%	1	R.ELQS#MADQEQVSPAAIK.K	2

gi|7662276|ref|NP_055

9.1%

921

102140

6.5

hypothetical protein LOC9747 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16476.16476.2	3.4573	0.3203	1100.332	1100.3385	1	961.1	94.4%	2	K.LGPFLLNAVR.W	2 2
	step02.19083.19083.3	5.6654	0.5194	2583.473	2583.9468	1	1907.3	43.5%	3	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	3 3
	step05.10524.10524.2	2.2145	0.0954	976.385	976.1575	3	568.5	71.4%	1	R.YRLPVATR.E	2 2
*	step03.9428.9428.2	2.4033	0.1944	770.23	768.92737	3	783.6	91.7%	1	R.GPLVINR.C	2
	step05.14678.14678.2	2.7589	0.3681	1220.833	1221.3927	1	645.3	75.0%	2	K.GLWGPVHELGR.N	2 2 2
	step03.20884.20884.2	2.8723	0.247	1818.564	1819.0967	1	848.3	64.3%	1	K.NLAPFFEAWAWPIQK.E	2 2 2
	step03.12887.12887.2	2.4802	0.2039	1132.394	1132.3577	1	1034.4	81.2%	2	K.LYLLTQM*PH.-	2 2

Similarities: gi|310115369|ref|XP_0(3:4)
gi|310115367|ref|XP_0(2:5)
gi|310115365|ref|XP_0(3:4)

gi|5032179|ref|NP_005

9.1%

835

88550

5.8

transcription intermediary factor 1-beta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16540.16540.3	7.2501	0.5894	3139.774	3140.4673	1	3670.2	43.8%	3	R.TVYCNVHKHEPLVLFCESCDTLTCR.D	3
*	step05.13471.13471.1	1.9803	0.2531	871.717	872.1306	2	350.3	64.3%	1	R.KLLASLVK.R	1
*	step06.17716.17716.2	2.6182	0.2917	1090.294	1090.3022	1	898.1	92.9%	2	K.LIYFQLHR.A	2
*	step05.7405.7405.3	4.3103	0.463	2021.257	2020.3024	1	1381.9	50.0%	5	K.IVAERPGTNSTGPAPMAPPR.A	3
*	step05.7764.7764.2	3.3136	0.3491	2021.678	2020.3024	1	412.5	44.7%	3	K.IVAERPGTNSTGPAPMAPPR.A	2
*	step02.14967.14967.2	3.0244	0.261	1659.533	1659.8615	1	1045.9	67.9%	2	R.LDLDLTADSQPPVFK.V	2

gi|32189392|ref|NP_00

9.1%

198

21892

6.0

peroxiredoxin-2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19100.19100.2	5.0368	0.5109	1863.917	1864.1787	1	1587.0	70.6%	3	R.KEGGLGPLNIPLLADVTR.R	2
*	step05.19116.19116.3	4.5128	0.3904	1864.58	1864.1787	1	1395.6	50.0%	1	R.KEGGLGPLNIPLLADVTR.R	3
*	step02.20076.20076.2	3.3265	0.3805	1736.233	1736.0059	1	641.6	56.2%	2	K.EGGLGPLNIPLLADVTR.R	2

U	gi\|301336155\|ref\|NP_0	4	7	9.0%	732	82393	7.0	tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 2 [Homo sapiens]
U	gi\|39995082\|ref\|NP_06	4	7	8.6%	767	86471	6.8	tRNA (cytosine-5-)-methyltransferase NSUN2 isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13806.13806.2	2.873	0.3514	1983.414	1984.2603	1	566.9	55.9%	3	R.LSSPCIMVVNHDASSIPR.L	2
step02.7107.7107.2	2.9872	0.3178	1581.294	1581.761	1	623.3	76.9%	1	R.ILCDVPCSGDGTMR.K	2
step02.21214.21214.3	4.8474	0.3452	2599.98	2599.9297	1	1213.6	35.2%	2	R.M*VYSTCSLNPIEDEAVIASLLEK.S	3
step02.16928.16928.2	2.4756	0.3087	1378.101	1378.6005	3	524.4	75.0%	1	K.ILLTQENPFFR.K	2

U	gi\|22547136\|ref\|NP_05	2	3	9.0%	311	34919	9.7	39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]
U	gi\|22547138\|ref\|NP_66	2	3	9.0%	311	34919	9.7	39S ribosomal protein L4, mitochondrial isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14934.14934.2	2.9179	0.3428	1341.832	1341.5435	1	664.8	80.0%	2	R.RPVQAWVESLR.G	2
	step04.19378.19378.2	3.7198	0.436	1925.828	1926.2454	1	1003.1	56.2%	1	K.HQTLVLTLPTVAFLEDK.L	2

gi|20270337|ref|NP_62

666

75404

4.5

RNA polymerase-associated protein LEO1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19098.19098.2	2.8713	0.123	2151.108	2150.0325	5	363.3	25.0%	1	-.MADMEDLFGS#DADS#EAER.K	2
*	step06.16066.16066.2	2.778	0.2899	1518.927	1518.7043	1	593.2	70.8%	2	K.APLQGDHNHLFIR.Q	2
*	step02.15984.15984.3	3.9776	0.2988	3102.242	3102.263	1	667.8	27.8%	2	R.GLSASYLEPDRYDEEEEGEESISLAAIK.N	3

gi|7706254|ref|NP_057

529

59578

8.9

nucleolar protein 58 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.21720.21720.2	6.0697	0.5815	1916.38	1915.1565	1	2983.0	76.5%	4	K.FQDTAEALAAFTALMEGK.I	2
*	step05.16681.16681.2	4.8304	0.5268	1884.01	1883.199	1	951.7	66.7%	1	K.LNLSCIHSPVVNELMR.G	2
*	step06.17715.17715.2	3.6119	0.4397	1320.75	1321.5936	1	1640.7	83.3%	2	R.LIAHAGSLLNLAK.H	2

gi|38455427|ref|NP_00

539

57924

7.8

T-complex protein 1 subunit delta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13990.13990.3	4.0195	0.285	1457.678	1457.656	1	1535.5	52.1%	1	K.GIHPTIISESFQK.A	3
*	step06.18585.18585.2	3.7436	0.4129	1347.299	1347.6213	1	1121.0	77.3%	4	K.IGLIQFCLSAPK.T	2
*	step02.19690.19690.2	4.3206	0.4905	1458.383	1457.656	1	2045.9	83.3%	3	R.DALSDLALHFLNK.M	2
*2	step03.13929.13929.2	3.2663	0.3758	1185.384	1184.3641	1	738.3	88.9%	3	R.SIHDALCVIR.C	2 2

Similarities: gi|24307939|ref|NP_03(1:3)

U	gi\|33469970\|ref\|NP_87	2	2	8.9%	425	47352	7.0	kynurenine/alpha-aminoadipate aminotransferase, mitochondrial [Homo sapiens]
U	gi\|7705897\|ref\|NP_057	2	2	8.9%	425	47352	7.0	kynurenine/alpha-aminoadipate aminotransferase, mitochondrial [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.3760.3760.2	2.2953	0.104	2863.766	2862.7712	1	227.4	18.3%	1	K.NTPKFLYTVPNGNNPTGNS#LT#S#ER.K	2
	step01.7203.7203.2	2.2115	0.344	1722.011	1720.868	1	222.5	43.6%	1	K.FRVPT#FLSMDVDGR.V	2

gi|50053872|ref|NP_94

246

28661

10.5

60S ribosomal protein L7-like 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16000.16000.2	2.5329	0.3032	1264.25	1264.582	6	368.6	65.0%	3	R.KIPLVPENLLK.K	2
*	step05.15665.15665.2	2.8737	0.3487	1446.223	1446.595	1	861.2	85.0%	1	K.RLESFLHDSWR.Q	2

gi|155969707|ref|NP_0

8.8%

1019

117968

6.6

insulin-degrading enzyme isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.17488.17488.2	2.9452	0.2563	1548.517	1548.8071	1	1129.7	66.7%	1	R.NLYVTFPIPDLQK.Y	2
*	step02.18579.18579.2	2.4905	0.1819	1804.44	1805.0634	1	582.7	60.7%	1	K.NEFIPTNFEILPLEK.E	2
	step03.216.216.3	5.7532	0.4762	2788.096	2788.2095	1	2759.0	40.2%	3	R.LLMTEVAWTKDELKEALDDVTLPR.L	3 3
	step04.15577.15577.1	1.8211	0.0991	1045.303	1045.2598	28	337.9	56.2%	1	K.AFIPQLLSR.L	1 1
	step04.15514.15514.2	2.5558	0.2537	1045.383	1045.2598	2	471.2	81.2%	2	K.AFIPQLLSR.L	2 2
	step05.15175.15175.2	4.3797	0.5401	1595.82	1595.8239	1	2301.6	84.6%	2	R.TKEQLGYIVFSGPR.R	2 2
	step05.15212.15212.3	3.8661	0.2663	1596.084	1595.8239	11	1011.9	42.3%	1	R.TKEQLGYIVFSGPR.R	3 3
	step05.13890.13890.2	4.4786	0.4211	1844.628	1845.0908	1	1243.6	85.7%	2	R.FIIQSEKPPHYLESR.V	2 2
	step05.13897.13897.3	3.7266	0.3476	1845.455	1845.0908	1	1487.7	51.8%	1	R.FIIQSEKPPHYLESR.V	3 3

Similarities: gi|260099676|ref|NP_0(7:2)

U	gi\|13514809\|ref\|NP_00	4	6	8.8%	660	73154	7.6	ATP-dependent RNA helicase DDX3Y [Homo sapiens]
U	gi\|169881239\|ref\|NP_0	4	6	8.8%	660	73154	7.6	ATP-dependent RNA helicase DDX3Y [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17940.17940.2	3.1702	0.317	1487.322	1486.7837	1	1043.9	75.0%	1	R.KQYPISLVLAPTR.E	2 2
step05.12840.12840.2	4.3905	0.4549	1888.904	1889.1418	1	962.8	65.6%	2	R.VRPCVVYGGADIGQQIR.D	2 2
step05.10751.10751.2	2.3278	0.2674	1181.662	1181.3635	3	545.9	60.0%	1	R.GCHLLVATPGR.L	2 2
step04.18065.18065.3	4.6034	0.3364	2084.259	2084.2766	1	1121.5	46.9%	2	R.HVINFDLPSDIEEYVHR.I	3 3

Similarities: gi|301171467|ref|NP_0(4:0)

gi|52632385|ref|NP_00

8.8%

456

50561

7.5

heterogeneous nuclear ribonucleoprotein L isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.8015.8015.3	5.2935	0.5494	2891.172	2891.9172	1	1718.6	37.0%	1	K.NDQDTWDYTNPNLSGQGDPGSNPNKR.Q	3 3
	step05.14377.14377.2	3.0176	0.299	1635.076	1635.8716	1	637.5	69.2%	2	R.AITHLNNNFMFGQK.L	2 2

Similarities: gi|52632383|ref|NP_00(2:0)

U	gi\|28557709\|ref\|NP_78	2	2	8.8%	318	34839	6.4	ribose-phosphate pyrophosphokinase 3 [Homo sapiens]
U	gi\|84875539\|ref\|NP_00	2	2	8.7%	321	35054	6.4	ribose-phosphate pyrophosphokinase 2 isoform 1 [Homo sapiens]
U	gi\|4506129\|ref\|NP_002	2	2	8.8%	318	34769	6.6	ribose-phosphate pyrophosphokinase 2 isoform 2 [Homo sapiens]
U	gi\|4506127\|ref\|NP_002	2	2	8.8%	318	34834	7.0	ribose-phosphate pyrophosphokinase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14866.14866.2	2.5498	0.1235	1395.732	1394.6365	1	527.4	68.2%	1	R.VTAVIPCFPYAR.Q	2
	step04.18133.18133.2	3.0351	0.2516	1786.942	1787.953	1	345.9	50.0%	1	R.THNGESVSYLFSHVPL.-	2

gi|29648305|ref|NP_14

8.7%

403

43547

8.5

zinc finger CCHC domain-containing protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19722.19722.2	2.4609	0.3514	910.128	910.1374	1	553.8	91.7%	2	K.TLFILFR.N	2
*	step06.18477.18477.2	2.4848	0.0891	1315.679	1315.5045	1	313.8	68.2%	1	R.HLPGAFFLGAER.G	2
*	step05.11810.11810.2	4.856	0.6037	1532.495	1532.6863	1	1953.8	80.0%	2	K.AVHNSVAAQLTGVAGH.-	2

gi|8922438|ref|NP_060

8.6%

280

31323

9.9

borealin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18211.18211.2	2.4953	0.2596	1776.924	1776.6082	1	323.3	28.6%	1	R.IY#NISGNGS#PLADS#K.E	2
*	step06.34387.34387.2	2.3023	0.1919	1209.426	1208.172	5	481.2	50.0%	1	R.LAQICS#S#IR.T	2

gi|310115365|ref|XP_0

8.5%

492

53673

6.5

PREDICTED: protein FAM115A-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16476.16476.2	3.4573	0.3203	1100.332	1100.3385	1	961.1	94.4%	2	K.LGPFLLNAVR.W	2 2
step02.19083.19083.3	5.6654	0.5194	2583.473	2583.9468	1	1907.3	43.5%	3	K.LGPDGAAFLQIPAEEIPAYMSVHR.L	3 3
step05.10524.10524.2	2.2145	0.0954	976.385	976.1575	3	568.5	71.4%	1	R.YRLPVATR.E	2 2

Similarities: gi|7662276|ref|NP_055(3:0)

U	gi\|310128734\|ref\|XP_0	2	3	8.5%	281	30720	7.0	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 3 [Homo sapiens]
U	gi\|310128738\|ref\|XP_0	2	3	11.2%	215	23515	7.0	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 5, partial [Homo sapiens]
U	gi\|310128736\|ref\|XP_0	2	3	8.5%	281	30720	7.0	PREDICTED: pyruvate kinase isozymes M1/M2-like isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14275.14275.2	5.0326	0.3897	1765.768	1766.032	1	1643.2	79.4%	2	K.KGVNLPGAAVDLPAVSEK.D	2 2 2
	step03.16548.16548.3	5.7152	0.3805	2479.518	2478.827	1	1518.9	39.1%	1	K.KGVNLPGAAVDLPAVSEKDIQDLK.F	3 3 3

Similarities: gi|310128730|ref|XP_0(2:0)
gi|33286418|ref|NP_00(2:0)

gi|32483374|ref|NP_00

8.4%

594

66050

9.2

nucleolar protein 56 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13882.13882.2	2.8446	0.3671	1151.346	1151.3806	1	1005.0	83.3%	2	R.LLLETHLPSK.K	2
*	step06.16605.16605.2	2.4648	0.2421	1279.664	1279.5535	1	734.6	70.0%	1	R.LLLETHLPSKK.K	2
*	step06.22867.22867.3	3.5317	0.28	2928.617	2927.344	1	606.9	29.2%	1	R.VDNMIIQSISLLDQLDKDINTFSM*R.V	3
*	step06.18709.18709.3	3.702	0.3049	1823.853	1824.0734	1	1323.3	48.1%	1	R.VREWYGYHFPELVK.I	3
*	step06.18682.18682.2	3.7197	0.394	1824.737	1824.0734	1	1385.8	80.8%	3	R.VREWYGYHFPELVK.I	2

U	gi\|187830823\|ref\|NP_0	3	7	8.4%	346	38501	6.0	cellular tumor antigen p53 isoform c [Homo sapiens]
U	gi\|187830855\|ref\|NP_0	3	7	8.5%	341	37826	5.8	cellular tumor antigen p53 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.12667.12667.1	1.9522	0.3104	1030.612	1031.19	1	372.2	66.7%	1	R.LGFLHSGTAK.S	1 1
step05.12550.12550.2	2.4953	0.2511	1031.355	1031.19	1	899.5	83.3%	1	R.LGFLHSGTAK.S	2 2
step06.19626.19626.2	5.1771	0.5253	2069.931	2069.3914	1	820.3	66.7%	5	R.RPILTIITLEDSSGNLLGR.N	2 2 2

Similarities: gi|187830894|ref|NP_0(1:2)
gi|120407068|ref|NP_0(3:0)

gi|21361454|ref|NP_03

8.4%

320

33637

7.8

pyrroline-5-carboxylate reductase 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9432.9432.2	3.011	0.3857	1019.273	1019.2425	1	941.6	93.8%	2	K.LM*AFQPAPK.V	2
*	step04.12312.12312.2	5.3384	0.4808	1829.731	1829.0848	1	2214.8	76.5%	3	R.VKLESPTVSTLTPSSPGK.L	2

gi|4506727|ref|NP_000

8.4%

263

29456

10.2

40S ribosomal protein S4, Y isoform 1 Y isoform [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15215.15215.1	1.8076	0.2861	1215.604	1216.3745	1	289.9	60.0%	1	K.GIPHLVTHDAR.T	1 1 1
step06.15162.15162.2	3.1896	0.384	1216.455	1216.3745	1	834.4	80.0%	2	K.GIPHLVTHDAR.T	2 2 2
step06.15504.15504.3	3.9085	0.3891	1222.969	1222.3774	1	1245.8	62.5%	2	R.HPGSFDVVHVK.D	3 3
step06.15486.15486.2	2.4273	0.3106	1223.647	1222.3774	1	376.8	75.0%	1	R.HPGSFDVVHVK.D	2 2

Similarities: gi|4506725|ref|NP_000(4:0)
gi|88703062|ref|NP_00(2:2)

gi|193211480|ref|NP_0

8.3%

1042

117805

6.5

superkiller viralicidic activity 2-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18062.18062.2	3.0735	0.3039	1427.491	1427.6715	1	869.9	81.8%	3	R.NFQPVIIFSFSK.K	2
*	step06.18593.18593.2	2.995	0.2072	1386.594	1386.7073	1	1230.8	81.8%	1	K.LPQVEHVLPLLK.R	2
*	step03.17291.17291.2	2.4423	0.2531	1999.035	1998.1838	55	141.2	35.3%	1	K.VKNEGDDFGWGVVVNFSK.K	2
*	step03.1913.1913.2	3.0706	0.305	2341.92	2342.6768	1	586.1	42.5%	1	K.SNVKPNSGELDPLYVVEVLLR.C	2
*	step03.1900.1900.3	4.4139	0.3585	2342.434	2342.6768	1	1045.2	37.5%	1	K.SNVKPNSGELDPLYVVEVLLR.C	3
*	step02.19542.19542.3	3.5051	0.437	2682.36	2683.0767	57	434.5	27.2%	1	K.RFPDGIPLLDPIDDMGIQDQGLKK.V	3

gi|150378533|ref|NP_0

8.2%

1102

128302

5.6

ubiquitin carboxyl-terminal hydrolase 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19811.19811.3	3.9881	0.2799	2379.569	2379.6523	1	826.3	41.7%	1	K.INDRFEFPEQLPLDEFLQK.T	3
*	step03.592.592.3	5.4589	0.437	2585.248	2584.8467	1	2233.5	43.2%	1	K.NSSLAEFVQSLSQTMGFPQDQIR.L	3
*	step06.16165.16165.2	3.9551	0.4691	1813.238	1814.0188	1	752.3	67.9%	1	R.SLNYCGHIYTPISCK.I	2
*	step03.15088.15088.2	3.1143	0.2771	1389.354	1388.6553	1	991.7	75.0%	1	K.IRDLLPVMCDR.A	2
*	step03.13402.13403.2	2.7491	0.1627	1405.901	1404.6548	2	269.5	70.0%	2	K.IRDLLPVM*CDR.A	2
*	step05.17590.17590.2	2.8346	0.3229	1163.953	1164.3811	1	1274.3	93.8%	2	R.DLLQFFKPR.Q	2
*	step05.20888.20888.2	3.2689	0.5018	1496.769	1496.777	1	872.2	70.8%	2	K.EVFGTFGIPFLLR.I	2

U	gi\|183603929\|ref\|NP_0	2	4	8.2%	342	38947	6.2	serine/threonine-protein phosphatase 6 catalytic subunit isoform a [Homo sapiens]
U	gi\|4506029\|ref\|NP_002	2	4	9.2%	305	35144	5.7	serine/threonine-protein phosphatase 6 catalytic subunit isoform b [Homo sapiens]
U	gi\|183603931\|ref\|NP_0	2	4	9.9%	283	32532	6.0	serine/threonine-protein phosphatase 6 catalytic subunit isoform c [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13492.13492.2	3.9439	0.3146	1429.615	1428.6179	1	771.8	72.7%	3	K.VTNEFVHINNLK.L	2
	step05.12252.12252.2	2.6373	0.2615	2001.386	2002.0635	4	315.5	28.3%	1	R.CGNIAS#IM*VFKDVNT#R.E	2

gi|110618253|ref|NP_0

8.1%

1230

138620

9.0

DNA-directed RNA polymerase, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.912.912.2	3.4684	0.3855	1673.152	1673.9264	1	811.6	79.2%	2	R.FSLYPFLCLLDER.E	2
*	step04.10774.10774.2	2.6917	0.2238	1499.696	1500.6443	1	526.3	66.7%	2	R.VSGQVQALQNHYR.K	2
*	step06.18933.18933.2	2.6836	0.3155	1493.537	1493.7764	1	457.7	81.8%	2	R.LVPVLYHVYSFR.N	2
*	step06.18205.18205.2	2.4171	0.232	1478.484	1478.7021	2	403.6	65.0%	2	R.VFWLPHNM*DFR.G	2
*	step06.17784.17784.2	2.7203	0.3881	1108.443	1108.359	1	798.7	88.9%	3	K.IHLVNLTGLK.K	2
*	step03.1235.1235.3	4.2707	0.4774	2407.297	2407.6394	1	2450.3	46.4%	1	R.LAFAEEVMDDILDSADQPLTGR.K	3
*	step04.14532.14532.2	3.739	0.3466	2128.559	2127.4292	1	422.0	47.2%	3	K.ETLQAVPKPGAFDLEQVKR.S	2

gi|300360505|ref|NP_0

8.1%

832

96036

5.0

importin-8 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.19817.19817.3	5.7273	0.4803	2798.889	2798.1597	1	1481.8	34.4%	4	R.MKFDIFEDYASPTTAAQTLLYTAAK.K	3 3
step06.1407.1407.2	3.3793	0.3355	1650.029	1649.956	1	645.7	56.7%	1	K.DGALHVIGSLAEILLK.K	2 2
step03.15849.15849.2	3.9248	0.4445	1229.8	1229.5278	1	1604.1	88.9%	4	K.LLEVIILQCK.G	2 2 2
step03.1152.1152.2	3.5432	0.2982	1900.323	1901.2324	1	753.5	60.0%	1	R.GIDQCIPLFVQLVLER.L	2 2

Similarities: gi|5453998|ref|NP_006(1:3)
gi|53759103|ref|NP_00(4:0)

U	gi\|21361437\|ref\|NP_05	5	6	8.1%	755	85853	4.4	HIV Tat-specific factor 1 [Homo sapiens]
U	gi\|253970456\|ref\|NP_0	5	6	8.1%	755	85853	4.4	HIV Tat-specific factor 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.13510.13510.2	2.2603	0.1338	736.913	736.9488	1	635.3	90.0%	1	K.FGIIMR.D	2
step04.15720.15720.2	2.4517	0.1407	1939.171	1939.2676	91	226.0	33.3%	1	K.FGIIMRDPQTEEFKVK.L	2
step02.20511.20511.3	3.8763	0.3464	2847.242	2847.176	1	815.0	34.1%	1	K.NMFHPMDFEDDPLVLNEIREDLR.V	3
step05.15312.15312.2	2.8081	0.2053	905.053	905.11914	1	869.2	100.0%	2	R.KLLLFDR.H	2
step04.16492.16492.2	3.8695	0.4514	1744.782	1744.9346	1	913.9	71.4%	1	R.LRGWEAFLNAPEANR.G	2

gi|14110407|ref|NP_11

8.1%

420

46437

9.6

heterogeneous nuclear ribonucleoprotein D-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.7220.7220.2	2.7164	0.4451	1168.379	1168.3151	1	1180.4	88.9%	1	R.FGEVVDCTIK.T	2 2 2
	step04.17871.17871.1	1.9975	0.1364	914.533	915.11255	6	566.5	64.3%	2	R.GFGFVLFK.D	1 1
	step05.17800.17800.2	2.8441	0.4086	915.025	915.11255	1	683.1	85.7%	4	R.GFGFVLFK.D	2 2
*	step05.15362.15362.2	3.231	0.2493	1992.178	1991.2262	1	365.1	46.7%	1	R.RGFCFITYTDEEPVKK.L	2

Similarities: gi|55956919|ref|NP_11(1:3)
gi|14110414|ref|NP_00(3:1)

gi|7661952|ref|NP_055

963

109935

5.6

squamous cell carcinoma antigen recognized by T-cells 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15359.15359.2	2.2107	0.0857	1870.889	1870.7589	20	209.6	29.7%	1	-.MATAAET#SASEPEAES#K.A	2
*	step06.21605.21605.2	2.341	0.1332	2002.589	2002.9945	12	310.2	28.0%	1	R.S#VFERALS#SVGLHMT#K.G	2
*	step05.11850.11850.2	2.6274	0.439	1143.862	1144.37	1	1085.3	80.0%	2	R.ALSSVGLHMTK.G	2
*	step03.16658.16658.2	3.2237	0.3179	1371.394	1370.6117	1	656.1	68.2%	1	K.LFISGLPFSCTK.E	2
*	step05.8322.8322.3	4.9186	0.3423	2966.933	2967.2861	1	1447.0	30.6%	3	R.ALQRPSAAAPQAENGPAAAPAVAAPAATEAPK.M	3

gi|39812378|ref|NP_00

729

77847

6.8

ran-binding protein 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13715.13715.2	5.0817	0.5777	1656.146	1655.8362	1	1969.3	84.6%	2	K.DKFSYIGLSQNNLR.V	2
*	step03.13737.13737.3	4.9758	0.4082	1656.451	1655.8362	1	1887.0	53.8%	2	K.DKFSYIGLSQNNLR.V	3
	step06.18163.18165.2	2.7202	0.2075	1938.044	1938.2081	1	581.1	50.0%	1	R.ATHPIPAACGIYYFEVK.I	2 2
*	step03.15544.15544.1	1.9661	0.2884	1059.552	1060.2711	6	335.7	68.8%	1	R.NPNLLFTLK.V	1
*	step03.15491.15491.2	2.6648	0.359	1060.154	1060.2711	1	554.2	87.5%	3	R.NPNLLFTLK.V	2
*	step03.13898.13898.3	3.5431	0.2835	2041.592	2041.2352	1	1665.6	45.6%	1	K.HQSSNLNVPELNSINMSR.S	3
*	step03.13038.13038.3	3.5983	0.2402	2056.562	2057.2346	1	1437.2	44.1%	1	K.HQSSNLNVPELNSINM*SR.S	3
*	step03.13046.13046.2	4.5874	0.5032	2056.584	2057.2346	1	1238.3	73.5%	2	K.HQSSNLNVPELNSINM*SR.S	2

Similarities: gi|40538736|ref|NP_06(1:7)

gi|13676857|ref|NP_06

639

70021

5.7

heat shock-related 70 kDa protein 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.1400.1400.2	3.8819	0.5418	1489.123	1488.5806	1	1079.7	79.2%	26	R.TTPSYVAFTDTER.L	2 2 2 2 2 2
step02.14061.14061.2	4.8032	0.4163	1789.678	1789.0656	1	1538.0	78.1%	4	R.IINEPTAAAIAYGLDKK.G	2 2 2
step02.15332.15332.2	4.0813	0.4627	1481.6	1481.6377	1	1015.9	81.8%	3	R.ARFEELNADLFR.G	2 2 2
step02.14472.14472.1	1.9365	0.1651	1081.389	1082.2336	1	351.8	75.0%	1	K.LLQDFFNGK.E	1 1 1 1
step02.15059.15059.2	2.6762	0.3737	1083.415	1082.2336	1	829.5	87.5%	3	K.LLQDFFNGK.E	2 2 2 2

U	gi\|213688375\|ref\|NP_0	4	4	8.0%	377	42009	5.4	actin, aortic smooth muscle [Homo sapiens]
U	gi\|4501889\|ref\|NP_001	4	4	8.0%	376	41877	5.5	actin, gamma-enteric smooth muscle propeptide [Homo sapiens]
U	gi\|4501883\|ref\|NP_001	4	4	8.0%	377	42009	5.4	actin, aortic smooth muscle [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14016.14016.2	3.5943	0.2628	1791.424	1791.94	1	1565.0	76.7%	1	K.SYELPDGQVITIGNER.F	2 2 2 2 2
step03.12402.12402.2	2.9353	0.1445	1549.61	1549.8818	1	1144.5	69.2%	1	R.MQKEITALAPSTMK.I	2 2 2
step02.8979.8979.1	1.8758	0.2438	1161.523	1162.3821	1	252.7	60.0%	1	K.EITALAPSTMK.I	1 1 1
step02.8931.8931.2	2.3177	0.1916	1162.257	1162.3821	2	651.0	70.0%	1	K.EITALAPSTMK.I	2 2 2

Similarities: gi|4501885|ref|NP_001(4:0)
gi|63055057|ref|NP_00(1:3)
gi|4501881|ref|NP_001(4:0)
gi|134133226|ref|NP_0(1:3)

gi|143770802|ref|NP_0

325

36909

8.8

39S ribosomal protein L1, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20631.20631.2	2.2374	0.1051	1978.979	1979.0203	34	293.3	33.9%	1	K.MVYQTS#LCS#CSVNIR.V	2
*	step05.16066.16066.2	3.2363	0.2306	1324.937	1324.5496	1	1233.4	85.0%	1	K.KFQILDFTSPK.Q	2

gi|88703062|ref|NP_00

263

29295

10.1

40S ribosomal protein S4, Y isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.15215.15215.1	1.8076	0.2861	1215.604	1216.3745	1	289.9	60.0%	1	K.GIPHLVTHDAR.T	1 1 1
step06.15162.15162.2	3.1896	0.384	1216.455	1216.3745	1	834.4	80.0%	2	K.GIPHLVTHDAR.T	2 2 2
step05.13711.13711.2	2.228	0.1555	1216.295	1216.4542	5	443.3	77.8%	1	R.TIRYPDPLIK.V	2 2

Similarities: gi|4506725|ref|NP_000(3:0)
gi|4506727|ref|NP_000(2:1)

gi|76880486|ref|NP_00

7.9%

2202

251458

7.1

activating signal cointegrator 1 complex subunit 3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13138.13138.2	3.1751	0.4606	1789.354	1789.9924	1	626.6	60.7%	1	K.IHYPHVYDSQAEAMK.T	2
*	step04.13087.13087.3	3.6231	0.4128	1790.655	1789.9924	1	1787.6	51.8%	1	K.IHYPHVYDSQAEAMK.T	3
*	step06.1728.1728.2	2.3806	0.1823	1907.322	1907.8435	1	450.7	33.8%	1	R.IPY#S#EPMPLS#FEEK.P	2
*	step03.249.249.3	6.6994	0.536	3499.316	3498.9854	1	1616.4	37.1%	2	R.IPYSEPMPLSFEEKPVYIQDLDEIGQLAFK.G	3
*	step02.21837.21837.3	6.3956	0.5253	3514.399	3514.9849	1	1648.5	37.1%	1	R.IPYSEPM*PLSFEEKPVYIQDLDEIGQLAFK.G	3
*	step06.19198.19198.2	4.6406	0.3755	1512.699	1511.8151	1	2405.5	83.3%	2	K.TNIAMLTVLHEIR.Q	2
*	step03.14129.14129.2	3.9257	0.4421	1373.011	1372.5958	1	2399.2	87.5%	2	R.KSVGDVALSQIVR.L	2
*	step06.20551.20551.3	3.867	0.4393	2737.7	2738.1782	1	1362.4	33.7%	1	R.LLILDEVHLLHEDRGPVLESIVAR.T	3
*	step05.17514.17514.3	4.6658	0.4962	2478.705	2478.739	1	819.0	38.8%	1	K.NCGHIPFFFPTQGHDYVLAEK.Q	3
*	step05.17566.17566.2	4.4621	0.4908	2479.322	2478.739	1	647.1	52.5%	2	K.NCGHIPFFFPTQGHDYVLAEK.Q	2
*	step03.17190.17190.2	4.4466	0.3194	1485.949	1485.6694	1	1698.4	83.3%	2	R.NLVENLFSNGHIK.V	2
*	step06.17939.17939.2	2.9418	0.2947	1345.364	1345.572	1	1227.7	85.0%	1	K.LSHYLTLLTQR.N	2
*	step05.11033.11033.2	2.6773	0.4335	1171.141	1171.3304	1	751.0	85.0%	1	R.ANPLAYGISHK.A	2
*	step04.16817.16817.2	2.4257	0.1485	1086.066	1086.2704	18	350.3	68.8%	2	R.LWGWASPLR.Q	2
*	step03.17.17.2	4.3844	0.5039	1786.818	1786.1086	1	2046.3	85.7%	4	R.YVDFPITDVLQMMGR.A	2

gi|20270253|ref|NP_11

7.9%

757

86360

5.2

activating signal cointegrator 1 complex subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.20443.20443.3	3.9762	0.4122	2794.779	2795.2234	1	626.6	31.8%	1	R.YFVLYKPPPKDNIPALVEEYLER.A	3
*	step05.17718.17718.2	2.6434	0.2258	983.205	983.1884	1	611.2	85.7%	1	R.SVFLTFLR.M	2
*	step04.1689.1689.3	4.1718	0.3915	3314.971	3313.6592	1	976.0	25.0%	1	R.FLRDYDALFPVAEDISLLQQASSVLDETR.T	3

U	gi\|38569503\|ref\|NP_68	4	13	7.9%	491	55217	9.7	probable ATP-dependent RNA helicase DDX52 isoform b [Homo sapiens]
U	gi\|38569505\|ref\|NP_00	4	13	6.5%	599	67498	9.7	probable ATP-dependent RNA helicase DDX52 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.20546.20546.2	4.3977	0.4391	1476.563	1475.8641	1	1144.8	75.0%	3	K.TLAFSIPILMQLK.Q	2
step05.19342.19342.2	3.5658	0.495	1491.544	1491.8635	1	780.7	70.8%	3	K.TLAFSIPILM*QLK.Q	2
step04.14170.14170.2	3.8755	0.3431	1305.393	1304.5199	1	1582.3	80.0%	4	K.KFDILVTTPNR.L	2
step05.20573.20573.2	4.174	0.4272	1702.493	1702.9775	1	1325.0	78.6%	3	K.GFNPPVLVFVQSIER.A	2

U	gi\|217272892\|ref\|NP_0	4	5	7.8%	972	109436	5.0	116 kDa U5 small nuclear ribonucleoprotein component isoform a [Homo sapiens]
U	gi\|217272894\|ref\|NP_0	4	5	8.1%	937	105384	5.2	116 kDa U5 small nuclear ribonucleoprotein component isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.21260.21260.2	2.382	0.1577	1485.414	1485.7478	5	496.4	50.0%	1	R.SFVEFILEPLYK.I	2
step05.9786.9786.2	2.9941	0.3227	1308.8	1307.5238	1	1583.0	83.3%	2	R.VLSGTIHAGQPVK.V	2
step04.17868.17868.3	4.6113	0.4196	2848.662	2847.2632	1	983.7	35.4%	1	R.YHIEVNRVPAGNWVLIEGVDQPIVK.T	3
step02.19164.19164.2	3.0891	0.4978	2759.478	2759.0168	1	772.8	38.0%	1	R.SIWAFGPDATGPNILVDDTLPSEVDK.A	2

gi|58331171|ref|NP_00

7.8%

486

53289

7.3

T-complex protein 1 subunit zeta isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.23305.23305.2	3.5138	0.4358	2206.898	2207.5527	1	1016.7	47.5%	2	K.VHAELADVLTEAVVDSILAIK.K	2 2
	step06.21168.21168.2	2.9177	0.3076	1770.27	1769.1206	1	725.6	56.2%	1	R.AQLGVQAFADALLIIPK.V	2 2

Similarities: gi|4502643|ref|NP_001(2:0)

U	gi\|157151755\|ref\|NP_0	2	3	7.8%	322	35564	9.6	ribonuclease P protein subunit p30 isoform a [Homo sapiens]
U	gi\|5454024\|ref\|NP_006	2	3	9.3%	268	29321	8.9	ribonuclease P protein subunit p30 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.13958.13958.2	3.3951	0.2597	1725.308	1724.9764	1	602.6	60.7%	2	R.LTIIVSDPSHCNVLR.A	2
	step06.14746.14746.2	2.8295	0.1781	1151.022	1151.3439	1	415.6	77.8%	1	K.RPPINVAIDR.G	2

gi|19923268|ref|NP_00

7.6%

761

87704

5.9

52 kDa repressor of the inhibitor of the protein kinase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18146.18146.2	3.8361	0.4132	2263.922	2263.455	1	806.1	50.0%	2	R.DNAIPTIFDLTSHLNNPHSR.H	2
*	step03.20478.20478.3	3.5262	0.1662	3254.503	3253.6055	4	349.2	25.0%	1	R.FVDESHNLREEFIGFLPYEADAEILAVK.F	3
*	step05.18953.18953.2	2.2426	0.3584	1212.054	1212.4641	1	524.6	83.3%	1	K.FFPNVYALLK.V	2

gi|6912366|ref|NP_036

7.6%

447

50146

8.9

F-box only protein 5 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.16074.16074.2	2.2084	0.0835	1975.504	1975.8077	7	316.0	26.2%	1	R.CS#CS#ASPSAVT#AAGRPR.P	2
*	step03.134.134.2	2.2574	0.1017	2406.623	2407.3604	7	280.8	23.3%	1	R.PRPS#DS#CKEESS#TLSVKMK.C	2

gi|55770868|ref|NP_06

7.6%

434

48488

5.3

putative tubulin beta-4q chain [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step06.18610.18610.3	8.4842	0.5422	3441.755	3441.7993	1	4986.2	41.4%	8	R.KEAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	3 3 3 3 3 3
2	step02.17018.17018.3	6.608	0.6359	3313.031	3313.6262	1	2685.9	35.5%	5	K.EAESCDCLQGFQLTHSLGGGTGSGMGTLLISK.I	3 3 3 3 3 3

gi|27597061|ref|NP_05

7.5%

1755

200537

6.2

E3 ubiquitin-protein ligase UBR2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12787.12787.2	2.9107	0.1363	1483.977	1484.6832	3	562.6	68.2%	1	R.EVYQHLAHYVPK.I	2 2
	step03.8109.8109.2	2.4913	0.17	885.392	885.00165	4	497.2	71.4%	1	R.GPNPFPQK.E	2 2
*	step05.15618.15618.2	2.4626	0.1007	1185.51	1185.4418	55	404.3	66.7%	1	R.RVQSLILDLK.Y	2
*	step03.1883.1883.2	4.1212	0.4235	1543.113	1542.7993	1	2205.2	91.7%	2	K.FLEGFDAFLELLK.C	2
*	step05.12911.12911.2	2.5448	0.3438	1008.477	1008.19946	1	599.2	81.2%	1	K.VSIHLPVSR.L	2
*	step06.288.288.3	6.0979	0.5071	3107.694	3107.6548	1	1567.3	37.5%	2	K.SEVAYKFPELLPLSELSPPMLIEHPLR.C	3
*	step03.16554.16554.2	3.9525	0.3518	1481.801	1481.7856	1	1552.5	83.3%	2	R.VLHLIGMALQEEK.Q	2
*	step05.15584.15584.2	2.7196	0.3841	1106.219	1106.3666	1	1364.0	83.3%	1	R.AMVLAAFVQR.S	2
*	step02.15887.15887.3	3.9154	0.3572	2489.34	2488.6973	1	936.6	35.0%	1	K.NSENVDELQLPEGFRPDFRPK.I	3
*	step03.15459.15459.2	2.4374	0.1562	877.052	877.1292	7	855.2	92.9%	1	R.AGIMPFLK.C	2
*	step03.12891.12891.2	2.481	0.1517	892.567	893.1286	7	715.1	85.7%	2	R.AGIM*PFLK.C	2

Similarities: gi|296317280|ref|NP_0(2:9)

gi|4503659|ref|NP_001

7.5%

133

14390

10.2

ubiquitin-like protein fubi and ribosomal protein S30 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14044.14044.1	2.3774	0.4103	1107.484	1108.3143	1	575.1	77.8%	3	R.FVNVVPTFGK.K	1
*	step03.14010.14013.2	3.4131	0.3406	1108.985	1108.3143	1	774.8	83.3%	4	R.FVNVVPTFGK.K	2

gi|7549793|ref|NP_036

7.4%

447

49798

9.4

transducin beta-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.10490.10490.2	2.2701	0.0843	2090.663	2090.214	11	244.1	25.0%	1	K.FIM*T#AS#SDTTVLIWSLK.G	2
*	step05.12708.12708.2	3.3007	0.2972	1691.137	1690.7576	1	378.1	53.3%	1	K.GHSAAVHSFAFSNDSR.R	2

gi|117647226|ref|NP_0

7.4%

403

47347

9.4

mitochondrial ribonuclease P protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17476.17476.2	3.0401	0.3546	1667.418	1667.882	1	627.0	66.7%	1	R.NVDPFHIYFCNLK.I	2
*	step04.15198.15198.2	5.2246	0.4937	2044.676	2044.2158	1	1022.3	68.8%	1	K.HTGFLEISQHSQEFINR.L	2

U	gi\|21361368\|ref\|NP_00	4	9	7.3%	795	87302	7.1	delta-1-pyrroline-5-carboxylate synthase isoform 1 [Homo sapiens]
U	gi\|62912457\|ref\|NP_00	4	9	7.3%	793	87089	7.1	delta-1-pyrroline-5-carboxylate synthase isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16510.16510.2	3.0728	0.33	1280.373	1280.4585	1	1020.3	80.0%	2	R.NLNGTLHELLR.M	2
step05.14762.14762.3	5.2571	0.4011	2594.169	2594.928	1	1790.7	40.2%	2	K.KVGTFFSEVKPAGPTVEQQGEMAR.S	3
step03.1119.1119.2	4.1386	0.5538	1462.825	1462.7393	1	1774.4	81.8%	2	R.TPLFDQIIDMLR.V	2
step04.12993.12993.2	3.0519	0.3069	1380.464	1380.5765	1	1296.6	85.0%	3	K.YLHENLPIPQR.N	2

gi|224589071|ref|NP_0

7.2%

1282

145807

6.4

ribosome biogenesis protein BMS1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19573.19573.2	3.0963	0.29	1770.68	1771.1998	1	371.3	56.2%	2	R.TPLEPPPIVVVVMGPPK.V	2
*	step05.16390.16390.2	3.8005	0.4251	1361.518	1361.6349	1	2108.5	90.9%	2	K.IMGVLTHLDSFK.H	2
*	step04.15209.15209.2	3.4512	0.3975	1377.553	1377.6343	1	1031.3	86.4%	2	K.IM*GVLTHLDSFK.H	2
*	step02.20384.20384.3	4.7092	0.3932	2301.389	2301.5635	1	2204.9	47.2%	1	R.FLVEAPHDWDLEEVMNSIR.D	3
*	step04.14093.14093.2	2.5406	0.1047	1602.558	1602.8416	1	798.5	66.7%	1	R.VQYEGFRPGMYVR.I	2
*	step05.16423.16423.3	4.98	0.3937	2023.252	2023.2397	1	1692.1	46.7%	1	R.RFQTIPLYYIEDHNGR.Q	3
*	step06.19761.19761.2	5.0849	0.4316	1610.209	1609.892	1	2234.6	82.1%	2	K.ILALLDALSTVHSQK.M	2

gi|62988322|ref|NP_00

7.1%

437

49192

5.5

testis-specific Y-encoded-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.21466.21466.2	2.4911	0.0941	2243.994	2243.4807	56	154.6	31.6%	1	R.MDPLEAIQLELDTVNAQADR.A	2
*	step04.16246.16246.2	2.5379	0.3332	1271.677	1271.5331	1	604.6	70.0%	1	R.VVSLSTPIIWR.R	2

gi|4504327|ref|NP_000

7.0%

474

51294

9.4

trifunctional enzyme subunit beta, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13180.13180.2	2.9026	0.4498	951.473	952.1359	1	776.0	87.5%	2	R.AALTGLLHR.T	2
*	step04.16917.16917.3	5.2673	0.3598	2027.912	2028.3376	6	1937.0	50.0%	3	K.KAQDEGLLSDVVPFKVPGK.D	3
*	step04.16914.16914.2	5.049	0.4921	2028.761	2028.3376	1	1214.3	63.9%	2	K.KAQDEGLLSDVVPFKVPGK.D	2
*	step05.16760.16762.3	4.8432	0.3893	2573.064	2572.9387	1	1168.5	34.8%	1	K.KAQDEGLLSDVVPFKVPGKDTVTK.D	3

gi|39725634|ref|NP_05

6.9%

1019

116465

9.1

la-related protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15970.15970.2	2.2116	0.1612	2026.103	2025.2092	7	319.2	36.1%	1	K.VGDFGDAINWPTPGEIAHK.S	2
*	step04.16360.16360.2	3.3807	0.3849	1708.796	1709.0487	1	482.2	76.9%	2	K.WVPLQIDMKPEVPR.E	2
*	step05.13920.13920.2	4.0083	0.4187	1473.462	1472.7805	1	1710.8	86.4%	2	K.ILIVTQTPHYMR.R	2
*	step05.12820.12820.2	3.8935	0.4379	1489.309	1488.7799	1	568.6	77.3%	2	K.ILIVTQTPHYM*R.R	2
	step06.20232.20232.2	2.5089	0.2597	1002.994	1003.1799	1	603.7	100.0%	3	R.FWSFFLR.D	2
*	step06.13402.13402.2	3.4745	0.4294	1862.047	1862.1432	1	479.0	50.0%	1	R.PAAM*ISQPPTPPTGQPVR.E	2

gi|4826988|ref|NP_005

6.9%

407

46296

10.4

60S ribosomal protein L3-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step06.17721.17721.2	3.2811	0.3782	1788.871	1788.981	1	403.2	66.7%	2	R.DDPSQPVHLTAFLGYK.A	2 2 2
	step06.15648.15648.2	4.147	0.3539	1366.692	1366.5896	1	2197.4	90.9%	1	R.KVACIGAWHPAR.V	2 2 2
	step05.11975.11976.2	3.5084	0.3253	1238.628	1238.4167	2	1074.7	75.0%	5	K.VACIGAWHPAR.V	2 2 2

Similarities: gi|76496472|ref|NP_00(3:0)
gi|4506649|ref|NP_000(3:0)

gi|66392146|ref|NP_11

6.9%

394

44403

5.4

phosphorylated adapter RNA export protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.9863.9863.2	3.9167	0.4876	1795.541	1794.9423	1	673.3	56.7%	2	R.AFQNTATACAPVSHYR.A	2
*	step05.17881.17881.2	3.424	0.4867	1159.535	1159.4027	1	1409.8	90.0%	3	R.TPGGVFLNLLK.N	2

gi|153791300|ref|NP_0

6.8%

687

79871

9.2

protein SDA1 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18232.18232.2	3.286	0.214	1948.671	1949.2438	1	680.8	65.6%	2	R.NNNKLPSNLPQLQNLIK.R	2
*	step05.16271.16272.2	3.2451	0.2017	1479.15	1478.7615	1	909.5	70.8%	3	K.LPSNLPQLQNLIK.R	2
*	step05.20743.20743.2	3.8172	0.3715	1728.473	1729.1034	1	1546.0	65.4%	1	K.VNVVLQNFMYTMLR.D	2
*	step06.18131.18131.2	2.2597	0.2871	901.296	900.1026	1	779.0	91.7%	1	R.TLIHLFR.T	2
*	step04.13416.13416.2	2.5439	0.106	1109.525	1108.2263	3	359.9	56.2%	1	R.VLTQEDFQK.I	2

U	gi\|16117787\|ref\|NP_00	2	3	6.8%	117	13293	11.5	60S ribosomal protein L34 [Homo sapiens]
U	gi\|16117789\|ref\|NP_29	2	3	6.8%	117	13293	11.5	60S ribosomal protein L34 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.9088.9088.1	2.0981	0.1654	977.415	978.1238	16	464.3	71.4%	1	R.AFLIEEQK.I	1
	step02.9144.9144.2	2.9652	0.1681	978.073	978.1238	1	880.6	92.9%	2	R.AFLIEEQK.I	2

U	gi\|255918192\|ref\|NP_0	4	6	6.7%	879	98485	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 4 [Homo sapiens]
U	gi\|255918198\|ref\|NP_0	4	6	7.0%	844	94445	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 2 [Homo sapiens]
U	gi\|255918196\|ref\|NP_0	4	6	6.8%	867	96957	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 1 [Homo sapiens]
U	gi\|255918194\|ref\|NP_0	4	6	6.8%	873	97669	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18738.18738.2	2.8088	0.1624	1004.233	1004.29065	2	755.4	92.9%	2	R.KLIEFLLK.A	2 2
step06.18103.18103.2	3.8432	0.4507	1609.366	1608.9056	1	769.7	73.1%	2	R.LGSFHELLLEPPKK.S	2
step06.17802.17802.3	4.1692	0.31	2507.494	2507.865	1	1283.1	33.0%	1	R.IANCIVHSTDKGPNSALVQQLIK.D	3 3
step02.2057.2057.2	2.4101	0.209	1600.188	1599.6399	1	349.0	57.7%	1	K.FADQDDIGNVSFDR.V	2 2

Similarities: gi|13489083|ref|NP_06(3:1)

gi|4503475|ref|NP_001

6.7%

463

50470

9.0

elongation factor 1-alpha 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.15457.15457.2	3.2726	0.4652	1315.339	1315.5427	1	879.0	86.4%	3	R.EHALLAYTLGVK.Q	2 2
step02.10736.10736.2	2.5074	0.2519	976.397	976.151	1	573.0	92.9%	2	R.LPLQDVYK.I	2 2
step03.10755.10755.2	3.4523	0.4318	1026.036	1026.2148	1	1126.2	90.0%	4	K.IGGIGTVPVGR.V	2 2

Similarities: gi|4503471|ref|NP_001(3:0)

gi|223468648|ref|NP_0

6.7%

269

31025

8.2

zinc finger protein 389 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13951.13951.2	2.5872	0.0869	1865.622	1866.9514	2	716.9	46.2%	1	K.HQRIHTGEKPY#EYK.E	2
*	step05.14117.14117.3	3.9718	0.2121	2341.373	2341.4556	1	976.0	32.4%	2	K.HQRIHTGEKPYEY#KECGK.A	3
*	step06.16252.16252.2	4.671	0.1061	2342.774	2341.4556	1	653.1	41.2%	10	K.HQRIHTGEKPYEY#KECGK.A	2

gi|151101459|ref|NP_0

6.6%

881

96724

4.6

serine/threonine-protein phosphatase 6 regulatory subunit 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12246.12246.2	2.3838	0.183	1385.342	1385.6312	2	517.7	65.0%	2	R.LLTCVERPQLR.Q	2
*	step03.15014.15014.3	6.3135	0.5727	3034.13	3034.2812	1	1797.2	37.0%	2	R.LIEQIHPSKDENQHSNASQSLCDIIR.L	3
*	step03.588.588.3	5.095	0.435	2606.736	2606.9175	1	1470.4	41.2%	1	K.EFNFPEEAVLQQAFMDFQMQR.M	3

U	gi\|294832006\|ref\|NP_0	2	5	6.6%	457	53000	6.5	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform 2 [Homo sapiens]
U	gi\|4506019\|ref\|NP_002	2	5	6.7%	447	51692	6.2	serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19005.19005.2	4.2992	0.3324	1845.916	1845.2224	1	811.4	63.3%	3	R.VPVFRPMDLMVEASPR.R	2
	step03.1300.1300.2	3.748	0.3	1560.791	1559.742	1	1323.6	69.2%	2	R.SFFSEIISSISDVK.F	2

U	gi\|149193319\|ref\|NP_0	2	2	6.6%	318	36613	5.7	G-rich sequence factor 1 isoform 2 [Homo sapiens]
U	gi\|149193321\|ref\|NP_0	2	2	4.4%	480	53136	6.2	G-rich sequence factor 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14992.14992.2	2.929	0.4041	1384.362	1384.5253	1	395.7	72.7%	1	R.NGENGIHFLLNR.D	2
	step04.14329.14329.2	2.2132	0.2472	1181.286	1181.3685	4	482.8	68.8%	1	R.YIEIFPSRR.N	2

U	gi\|187960109\|ref\|NP_0	4	9	6.5%	759	85738	9.2	RNA-binding protein 28 isoform 1 [Homo sapiens]
U	gi\|260898763\|ref\|NP_0	4	9	7.9%	618	69923	8.5	RNA-binding protein 28 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.1128.1128.2	6.1651	0.4599	2557.044	2555.7324	1	1513.2	57.1%	4	R.NLSFDSEEEELGELLQQFGELK.Y	2
step03.11615.11615.2	3.2195	0.4187	1221.341	1220.4031	1	1063.6	88.9%	2	K.LKDQNIFVSR.T	2
step06.15018.15018.2	2.2776	0.3256	893.208	893.0685	1	673.3	78.6%	1	K.VLALPSHR.G	2
step02.9179.9179.2	3.1996	0.3132	1170.093	1169.3113	1	1076.4	87.5%	2	R.FNQLVEQYK.Q	2

gi|109948283|ref|NP_0

6.5%

648

73584

9.6

KIAA0020 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16586.16586.2	4.0511	0.4741	1766.71	1767.1282	1	848.4	75.0%	1	K.FLMYGSKPQIAEIIR.S	2
*	step05.15542.15544.2	3.8252	0.4427	1783.283	1783.1276	1	659.0	67.9%	1	K.FLM*YGSKPQIAEIIR.S	2
*	step06.18778.18778.2	3.9066	0.3996	1202.766	1202.5139	1	1631.8	88.9%	1	R.KVLLYLLSPR.D	2
*	step05.16943.16943.2	2.9857	0.3098	1074.035	1074.341	1	1086.4	87.5%	4	K.VLLYLLSPR.D	2
*	step04.14322.14322.2	3.5035	0.3315	1836.263	1837.0719	1	1708.9	68.8%	2	K.DGELHIAEHPAGHLVLK.W	2
*	step04.14383.14383.3	3.8638	0.2769	1836.573	1837.0719	1	1227.8	43.8%	1	K.DGELHIAEHPAGHLVLK.W	3

gi|24497612|ref|NP_11

6.5%

649

72696

6.9

ubiquitin-associated and SH3 domain-containing protein B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18161.18161.2	3.9382	0.4408	1617.546	1616.8665	1	1088.4	71.4%	3	K.HGSALDVLLSM*GFPR.A	2
*	step05.15348.15348.2	4.778	0.5063	1748.868	1749.0463	1	1758.9	78.6%	2	R.EYVLYLRPTGPLAQK.L	2
*2	step04.16824.16824.2	3.1111	0.3379	1475.463	1475.7162	1	780.6	63.6%	2	K.IRVEPGLFEWTK.W	2

gi|28875797|ref|NP_05

6.5%

248

26397

12.2

Friend of PRMT1 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11217.11217.2	4.5831	0.3202	1784.931	1785.062	1	1106.3	63.3%	2	R.LAQQMENRPSVQAALK.L	2
*	step04.10547.10547.2	3.0941	0.2571	1800.748	1801.0614	1	481.2	63.3%	1	R.LAQQM*ENRPSVQAALK.L	2

gi|169218225|ref|XP_9

1700

194322

6.7

PREDICTED: u5 small nuclear ribonucleoprotein 200 kDa helicase-like, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.16482.16482.3	3.7926	0.4013	2921.356	2922.3237	1	889.4	33.0%	1	K.GYEEVHVPALKPKPFGSEEQLLPVEK.L	3 3
step02.19649.19649.3	4.8094	0.4885	2822.487	2822.1626	1	1410.6	37.0%	2	K.GLFYFDNSFRPVPLEQTYVGITEK.K	3 3
step06.21157.21157.2	3.7561	0.4038	1487.134	1487.8115	1	1855.8	79.2%	1	K.INVLLQAFISQLK.L	2 2
step05.1470.1470.3	4.637	0.3041	3069.214	3068.5137	1	879.1	32.3%	1	K.YAQDEHLITFFVPVFEPLPPQYFIR.V	3 3
step03.244.244.3	4.6763	0.3927	2410.314	2409.592	1	1359.0	41.2%	3	R.HLSDHLSELVEQTLSDLEQSK.C	3 3

Similarities: gi|40217847|ref|NP_05(5:0)

gi|7019419|ref|NP_037

731

83655

9.2

nucleolar GTP-binding protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13590.13590.2	2.5672	0.3125	1082.181	1082.3019	1	807.0	81.2%	2	K.LPMSLLHDR.I	2
*	step04.14173.14173.2	2.3073	0.1997	1065.008	1065.2495	1	751.5	85.7%	2	K.RIWGELYK.V	2
*	step06.17928.17928.2	2.7584	0.4023	983.854	984.21954	1	886.0	92.9%	2	K.HLIFVLNK.C	2
*	step03.15706.15706.2	2.573	0.0921	918.153	918.1179	3	1081.9	85.7%	1	K.GAFIQLLR.Q	2
*	step03.13539.13539.2	3.4546	0.4578	1564.508	1564.7682	1	1181.2	76.9%	2	K.IKSPEDHIGAVLER.A	2

gi|19923475|ref|NP_05

497

55799

7.5

tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit TRM6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20316.20316.2	2.9327	0.1288	1766.44	1765.8632	9	290.5	36.5%	1	K.KY#EAIIT#VVKPSTR.I	2
*	step05.17212.17212.2	4.5551	0.5276	1806.773	1807.1093	1	880.4	58.8%	2	R.MGGFGSIIQLYPGGGPVR.A	2

gi|116812577|ref|NP_0

392

46514

10.0

putative RNA-binding protein Luc7-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12943.12943.3	3.7735	0.4461	1867.26	1867.0433	1	1104.3	50.0%	2	K.SHLLNCCPHDVLSGTR.M	3
*	step05.12931.12931.2	5.6103	0.6187	1867.554	1867.0433	1	2405.9	80.0%	2	K.SHLLNCCPHDVLSGTR.M	2
*	step05.17561.17561.2	2.9482	0.3023	1098.375	1098.3226	1	1178.9	93.8%	4	K.LHLGFIEIR.E	2

gi|54112121|ref|NP_03

6.3%

1217

135577

5.3

splicing factor 3B subunit 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16864.16864.2	2.633	0.4209	1300.116	1299.5668	1	836.2	72.2%	2	-.MFLYNLTLQR.A	2
*	step03.12482.12482.2	2.7836	0.4154	1196.483	1196.3783	1	537.9	65.0%	2	R.LTISSPLEAHK.A	2
*	step06.18845.18845.2	4.8268	0.4759	1922.486	1922.2185	1	1049.6	62.5%	1	K.LGAVFNQVAFPLQYTPR.K	2
*	step04.16495.16495.3	7.5284	0.4711	3000.656	2999.3235	1	2331.8	42.0%	6	R.KFVIHPESNNLIIIETDHNAYTEATK.A	3
*	step04.13792.13792.2	3.2346	0.332	1541.715	1541.7761	1	586.5	66.7%	2	K.LVNNGEKLEFLHK.T	2

gi|6912246|ref|NP_036

6.3%

510

54986

8.5

DNA-directed RNA polymerase I subunit RPA34 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14980.14980.2	2.3359	0.3031	1991.8	1991.1863	1	480.5	47.1%	1	R.FSCPPNFTAKPPASESPR.F	2
*	step05.11670.11670.2	3.2041	0.4708	1476.95	1477.6425	1	753.8	65.4%	2	R.FCAFGGNPPVTGPR.S	2

gi|40217847|ref|NP_05

2136

244505

6.1

U5 small nuclear ribonucleoprotein 200 kDa helicase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.16482.16482.3	3.7926	0.4013	2921.356	2922.3237	1	889.4	33.0%	1	K.GYEEVHVPALKPKPFGSEEQLLPVEK.L	3 3
*	step06.21094.21094.3	4.3552	0.1111	2722.191	2722.1787	1	1483.7	35.9%	4	R.LIILDEIHLLHDDRGPVLEALVAR.A	3
	step02.19649.19649.3	4.8094	0.4885	2822.487	2822.1626	1	1410.6	37.0%	2	K.GLFYFDNSFRPVPLEQTYVGITEK.K	3 3
	step06.21157.21157.2	3.7561	0.4038	1487.134	1487.8115	1	1855.8	79.2%	1	K.INVLLQAFISQLK.L	2 2
	step05.1470.1470.3	4.637	0.3041	3069.214	3068.5137	1	879.1	32.3%	1	K.YAQDEHLITFFVPVFEPLPPQYFIR.V	3 3
	step03.244.244.3	4.6763	0.3927	2410.314	2409.592	1	1359.0	41.2%	3	R.HLSDHLSELVEQTLSDLEQSK.C	3 3

Similarities: gi|169218225|ref|XP_9(5:1)

gi|25777602|ref|NP_00

908

100200

5.2

26S proteasome non-ATPase regulatory subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18716.18716.2	3.5012	0.3177	1522.894	1521.8296	1	603.7	57.1%	2	R.AVPLALALISVSNPR.L	2
*	step06.17353.17355.2	4.4621	0.5545	2079.259	2080.3328	1	552.5	55.6%	1	K.TITGFQTHTTPVLLAHGER.A	2
*	step04.544.544.3	4.4676	0.3605	2458.546	2458.8772	1	1424.8	38.1%	2	R.AELATEEFLPVTPILEGFVILR.K	3

gi|11545835|ref|NP_07

693

79435

4.6

testis-specific Y-encoded-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5872.5872.2	2.2173	0.2289	1705.269	1704.8842	30	104.9	46.4%	1	R.LQEETEAAQVLADMR.G	2
*	step06.19953.19953.2	3.9633	0.4495	1566.471	1566.8705	1	1210.0	79.2%	4	R.DLIIQHIPGFWVK.A	2
*	step04.17460.17460.2	2.453	0.3046	1795.287	1795.1182	14	142.6	46.4%	1	R.IAEIIKNDLWVNPLR.Y	2

gi|115430110|ref|NP_6

452

52023

9.1

hypothetical protein LOC153643 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.14910.14910.2	2.3984	0.0942	1698.915	1699.6539	28	240.4	26.8%	1	K.AGKAS#IM*SSDT#NVNK.S	2
*	step05.12090.12090.2	2.6589	0.1306	1718.969	1718.9335	127	195.5	36.1%	1	K.MDLEKY#KVQKDLK.K	2

U	gi\|20149629\|ref\|NP_05	2	4	6.2%	455	50647	9.1	probable ATP-dependent RNA helicase DDX47 isoform 1 [Homo sapiens]
U	gi\|41327776\|ref\|NP_95	2	4	6.9%	406	45169	9.2	probable ATP-dependent RNA helicase DDX47 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.1102.1102.2	2.7354	0.2406	1926.179	1926.2485	2	414.4	41.2%	1	K.TGAFALPILNALLETPQR.L	2
	step05.16380.16380.2	3.4911	0.3785	1131.208	1131.3926	1	1516.9	94.4%	3	R.LFALVLTPTR.E	2

gi|56243583|ref|NP_07

432

47405

6.7

WD repeat-containing protein 18 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18957.18957.3	3.8813	0.3032	1745.378	1745.0559	1	1718.7	46.9%	1	R.GLALLNGEYLLAAQLGK.N	3
*	step02.7102.7102.2	2.2413	0.4192	1073.698	1073.1852	1	637.9	83.3%	1	K.SVLGGQDQLR.V	2

gi|13514831|ref|NP_00

875

100888

8.6

probable ATP-dependent RNA helicase DDX10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22660.22660.2	3.5991	0.4885	1606.42	1605.945	1	1221.8	80.8%	3	K.TLAFLVPVLEALYR.L	2
*	step04.13680.13680.2	3.3751	0.2375	1485.085	1484.7196	1	1596.3	79.2%	1	R.INNINILVCTPGR.L	2
*	step03.20724.20724.3	3.9654	0.3214	2829.643	2829.283	1	1173.4	34.0%	1	K.DKEVFDVSKLPIPEYALSLGLAVAPR.V	3
*	step06.20177.20177.2	4.9043	0.4893	1781.49	1781.1313	1	1957.1	81.2%	3	K.LPIPEYALSLGLAVAPR.V	2

gi|153218646|ref|NP_0

521

60102

8.8

cholesterol side-chain cleavage enzyme, mitochondrial isoform a precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13430.13430.2	2.3084	0.1001	2078.24	2079.1309	44	210.5	25.0%	1	K.GCQT#FLS#APREGLGRLR.V	2
*	step03.9194.9194.2	2.8059	0.0912	1915.815	1914.9323	43	160.4	34.4%	4	R.LRVPTGEGAGIS#TRS#PR.P	2

gi|15529978|ref|NP_21

477

54272

6.2

zinc finger protein 622 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16752.16752.2	2.6533	0.0841	1894.619	1894.1453	11	326.3	37.5%	2	R.RKVASM*APVTAEGFQER.V	2
*	step03.13599.13599.2	2.7656	0.4105	1441.167	1441.572	1	978.5	81.8%	2	K.FASFNAYENHLK.S	2

gi|17865802|ref|NP_00

444

49302

7.2

vacuolar protein sorting-associated protein 4B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.9610.9610.2	3.0265	0.1255	1575.57	1574.7598	13	557.7	50.0%	1	K.WSDVAGLEGAKEALK.E	2
	step05.15708.15708.2	3.7878	0.2818	1157.129	1157.3868	1	1258.5	81.8%	2	R.GILLFGPPGTGK.S	2

U	gi\|15147333\|ref\|NP_05	4	5	6.0%	964	107906	5.2	E3 ubiquitin-protein ligase TRIM37 [Homo sapiens]
U	gi\|52487176\|ref\|NP_00	4	5	6.0%	964	107906	5.2	E3 ubiquitin-protein ligase TRIM37 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18815.18815.2	3.9175	0.2058	1606.65	1606.8951	1	1901.6	79.2%	1	K.SSEILMMFQQVHR.K	2
step03.11103.11103.2	2.3417	0.2258	1318.01	1317.5187	1	730.0	63.6%	1	R.LKVYPDGNGVVR.G	2
step02.17591.17591.2	4.1142	0.4643	2273.715	2272.5432	1	825.2	52.6%	1	R.LDLLANEGYLNPQNDTVILR.F	2
step05.15504.15504.2	2.4823	0.3887	1334.362	1334.5891	1	1042.5	70.8%	2	R.ALIHGSIGDILPK.T	2

gi|17505907|ref|NP_07

6.0%

851

94087

10.0

probable ATP-dependent RNA helicase DDX31 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12347.12347.2	2.8909	0.2569	1629.458	1628.857	1	925.4	65.4%	1	K.NNPDIPELHRPVVK.Q	2 2
	step06.19666.19666.2	4.4343	0.2757	1277.148	1276.5862	1	1907.5	85.0%	2	R.LVCLAAFILQK.C	2 2
*	step05.17664.17664.3	6.7943	0.4377	2754.592	2755.0696	1	2549.5	43.0%	2	R.IGCHGSSLLILAPSEAEYVNSLASHK.I	3

Similarities: gi|20336298|ref|NP_61(2:1)

U	gi\|187475373\|ref\|NP_0	2	2	6.0%	450	50704	7.1	tyrosine-protein kinase CSK [Homo sapiens]
U	gi\|4758078\|ref\|NP_004	2	2	6.0%	450	50704	7.1	tyrosine-protein kinase CSK [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17336.17336.2	2.3254	0.1286	2111.235	2111.92	37	180.8	22.4%	1	K.VSDFGLTKEASS#T#QDT#GK.L	2
	step05.11455.11455.2	2.3909	0.4084	1037.791	1037.2808	1	788.2	87.5%	1	R.IPLKDVVPR.V	2

gi|7661672|ref|NP_056

6.0%

368

42033

8.6

polymerase delta-interacting protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.17163.17163.2	2.742	0.2069	1173.739	1173.3912	1	885.1	83.3%	2	R.GVVLFPWQAR.L	2
*	step04.15078.15078.2	3.0769	0.5765	1503.21	1503.6466	1	990.9	86.4%	2	K.NHPWLELSDVHR.E	2
*	step04.15091.15091.3	4.232	0.3077	1503.333	1503.6466	1	1384.9	59.1%	2	K.NHPWLELSDVHR.E	3

gi|226530908|ref|NP_0

6.0%

285

30315

7.5

protein-L-isoaspartate(D-aspartate) O-methyltransferase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18862.18862.2	3.9822	0.5073	1962.818	1963.4371	1	1508.9	75.0%	2	K.MKPLMGVIYVPLTDKEK.Q	2
*	step06.17391.17391.3	3.8799	0.1994	1995.092	1995.4359	5	670.2	39.1%	2	K.MKPLMGVIYVPLTDKEK.Q	3

gi|185135971|ref|NP_0

5.9%

614

68392

8.9

polyadenylate-binding protein 1-like [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.14659.14659.1	1.91	0.2521	1157.711	1158.3749	1	259.3	65.0%	1	K.FSPAGPILSIR.V	1 1 1 1
step05.14614.14614.2	2.2341	0.3204	1158.005	1158.3749	1	574.1	90.0%	2	K.FSPAGPILSIR.V	2 2 2 2
step05.13246.13246.2	2.3369	0.3136	1063.292	1063.275	2	663.1	72.2%	1	R.KSGVGNIFIK.N	2 2
step02.15089.15089.2	4.1756	0.5202	1664.202	1663.8021	1	1286.0	67.9%	1	K.GFGFVCFSSPEEATK.A	2 2 2 2

Similarities: gi|46367787|ref|NP_00(4:0)
gi|208431833|ref|NP_0(1:3)
gi|45238849|ref|NP_11(3:1)
gi|109948285|ref|NP_0(2:2)

gi|9945320|ref|NP_064

5.9%

526

59634

10.7

cyclin-L1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.586.586.2	3.1549	0.1878	1640.379	1640.9858	1	1214.3	71.4%	1	R.ILGCELIQAAGILLR.L	2
*	step05.14477.14477.2	4.4597	0.2655	1873.299	1874.1305	1	936.6	63.3%	1	K.RTPSPLILDQNYINTK.N	2

U	gi\|47174861\|ref\|NP_06	2	9	5.9%	473	53194	10.1	suppressor of SWI4 1 homolog [Homo sapiens]
U	gi\|99028871\|ref\|NP_00	2	9	3.5%	794	87918	9.5	PPAN-P2RY11 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.15262.15262.2	6.0066	0.5599	1838.803	1838.0153	1	1511.9	76.7%	7	R.NLEAYAANPHSFVFTR.G	2
	step05.13830.13830.2	2.8285	0.2889	1258.444	1258.4912	1	937.9	81.8%	2	R.LPGGPTLTFQVK.K	2

U	gi\|260898743\|ref\|NP_0	2	2	5.9%	457	51852	8.1	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 2 precursor [Homo sapiens]
U	gi\|4758786\|ref\|NP_004	2	2	5.8%	463	52546	7.6	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.16505.16505.2	2.6445	0.1978	1728.015	1729.0717	1	362.0	50.0%	1	R.IIAQCLNKM*PPGEIK.V	2
	step05.13730.13730.2	2.8434	0.3867	1197.612	1197.3679	1	960.3	81.8%	1	K.APGFAHLAGLDK.M	2

gi|26190616|ref|NP_75

5.9%

406

46720

6.1

kelch domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.11081.11081.1	2.2067	0.1414	1271.7	1271.2937	194	167.2	37.0%	1	K.LY#IFGGYDDK.G	1
*	step04.16504.16504.2	2.238	0.0941	1999.782	1999.9321	55	177.5	26.2%	1	K.GY#S#NRLYFVNLRT#R.D	2

gi|15147337|ref|NP_05

2799

309352

5.8

E3 ubiquitin-protein ligase UBR5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15794.15794.3	3.7139	0.3624	2053.32	2052.3193	6	824.9	38.2%	1	K.YNLNSHPPLNVLEQATIK.Q	3
	step04.15085.15085.3	4.1149	0.4184	2058.046	2058.3987	1	1312.8	38.2%	1	K.KLCIPEKTEILAVNVDSK.G	3 3
	step02.16164.16164.2	2.616	0.2741	1731.178	1730.0013	2	320.6	46.7%	1	R.NVAIFTAGQESPIILR.D	2 2
	step03.14442.14442.2	4.319	0.4456	1514.879	1513.7643	2	820.4	69.2%	2	R.LLTATNLVTLPNSR.G	2 2
	step03.14817.14817.3	5.3157	0.3253	2296.368	2296.568	1	3920.1	51.3%	2	R.IGHLLPEEQVYLNQQSGTIR.L	3 3
	step04.13511.13511.2	3.4747	0.3503	1603.716	1603.846	1	556.3	53.8%	1	K.YNHLVYSQIPAAVK.L	2 2
	step04.13487.13488.2	4.9523	0.5216	2202.806	2202.3667	1	553.6	52.5%	2	R.KEDLFGRPSQGLYSSSASSGK.C	2 2
	step05.19775.19775.3	4.0889	0.3983	2141.684	2141.5273	1	1314.1	41.2%	1	R.ILGLCLLQNELCPITLNR.H	3 3
	step04.14398.14398.2	4.1293	0.3306	1495.774	1495.8391	1	2111.4	87.5%	2	R.MLVVAEQPLHAMR.K	2 2
	step04.13308.13308.2	3.7916	0.4334	1511.156	1511.8385	1	822.6	79.2%	1	R.M*LVVAEQPLHAMR.K	2 2
	step04.12781.12781.2	3.5545	0.2411	1512.014	1511.8385	1	1162.5	83.3%	2	R.MLVVAEQPLHAM*R.K	2 2
	step05.15283.15283.2	3.0499	0.2751	983.279	983.22986	1	1038.9	93.8%	1	R.KGLLDVLPK.N	2 2

Similarities: gi|310128854|ref|XP_0(11:1)

gi|68508961|ref|NP_00

943

106834

9.4

centromere protein C 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.6892.6892.2	3.3224	0.2132	1700.264	1698.8959	1	553.8	57.1%	1	K.ECQKSHPKSVPVSSK.K	2
*	step05.9601.9601.2	2.2981	0.0851	1403.2	1402.3857	35	370.4	45.5%	1	K.PHPVETSQPS#DK.T	2
*	step06.17838.17838.2	2.3646	0.1749	1627.522	1627.7856	1	575.1	51.3%	2	K.KQM*PPVGS#KKSSTR.K	2
*	step06.23446.23446.2	2.9456	0.083	1588.908	1587.7804	2	463.5	53.8%	1	K.NEDNIMTAQNVPLK.P	2

gi|194097365|ref|NP_0

847

96558

8.4

putative rRNA methyltransferase 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20291.20291.3	5.1995	0.3738	3422.415	3421.8308	6	343.9	22.6%	2	K.VDVVLNDGAPNVGASWVHDAYSQAHLTLMALR.L	3
*	step02.18286.18286.2	3.0574	0.1716	1655.258	1654.9294	1	1229.6	65.6%	1	R.ILDPEGLALGAVIASSK.K	2

U	gi\|291084505\|ref\|NP_0	2	2	5.8%	705	79496	8.9	NF-kappa-B-repressing factor isoform 1 [Homo sapiens]
U	gi\|63003897\|ref\|NP_06	2	2	5.9%	690	77673	8.8	NF-kappa-B-repressing factor isoform 2 [Homo sapiens]
U	gi\|291084508\|ref\|NP_0	2	2	5.9%	690	77673	8.8	NF-kappa-B-repressing factor isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19276.19276.3	3.8268	0.2568	2891.388	2892.1316	1	1203.2	30.0%	1	K.HWTNFVITENANDAIGILNNSASFNK.M	3
	step02.12430.12430.2	4.4132	0.5296	1740.104	1738.9154	1	1224.3	71.4%	1	R.VFLQDHCLAEGYGTK.K	2

gi|5031579|ref|NP_005

692

76108

5.1

A-kinase anchor protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23659.23659.2	3.0202	0.3036	2084.131	2084.3132	1	1124.4	47.4%	1	K.ETPEEVAADVLAEVITAAVR.A	2
*	step02.3947.3947.2	4.2771	0.5789	1971.37	1971.0687	1	953.5	65.8%	1	R.VAPAPAAADAEVEQTDAESK.D	2

gi|55953087|ref|NP_03

634

73965

9.5

nucleolar GTP-binding protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.21342.21342.3	3.7128	0.3337	2740.132	2741.0698	1	1220.7	31.0%	1	K.LDDIHPFYADLMNILYDKDHYK.L	3
*	step06.20002.20002.2	4.076	0.4619	1682.316	1682.9696	1	1689.9	78.6%	1	R.NTIEMQAITALAHLR.A	2

gi|13375636|ref|NP_07

571

64062

7.1

PR domain zinc finger protein 14 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.21185.21185.2	2.5928	0.0806	2074.231	2072.9556	2	461.1	30.9%	1	K.QSEDGPKPS#NQEGKS#PAR.F	2
*	step01.4806.4806.2	2.8977	0.082	2227.5	2227.1804	4	313.3	35.7%	1	K.Y#Y#RDKHLKYT#PCVDK.G	2

gi|199559779|ref|NP_1

538

59374

8.6

coiled-coil domain-containing protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.7632.7632.2	3.3333	0.4572	1152.724	1153.3801	1	1085.5	88.9%	4	R.VQQMVTPPPR.L	2
*	step02.7528.7528.2	2.6738	0.3482	1541.216	1541.6849	1	1016.2	71.4%	2	R.LGNAGDVCVPQASPR.R	2
	step05.9018.9018.1	1.8723	0.1211	668.717	668.8477	1	251.8	80.0%	1	R.LPTLPK.R	1 1

Similarities: gi|41327749|ref|NP_03(1:2)

U	gi\|14165435\|ref\|NP_11	2	3	5.8%	463	50976	5.5	heterogeneous nuclear ribonucleoprotein K isoform b [Homo sapiens]
U	gi\|14165439\|ref\|NP_00	2	3	5.8%	464	51028	5.3	heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]
U	gi\|14165437\|ref\|NP_11	2	3	5.8%	464	51028	5.3	heterogeneous nuclear ribonucleoprotein K isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.568.568.2	3.4359	0.3947	1843.497	1844.1825	1	534.8	43.8%	1	R.ILSISADIETIGEILKK.I	2
	step04.11008.11008.2	3.0182	0.3725	1054.262	1054.2682	1	880.3	77.8%	2	R.VVLIGGKPDR.V	2

gi|11321607|ref|NP_00

432

48551

6.1

thyroid receptor-interacting protein 13 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14914.14914.2	3.4522	0.272	1597.51	1597.8844	1	1016.9	69.2%	2	R.VVNAVLTQIDQIKR.H	2
*	step04.15779.15779.2	2.2628	0.1391	1273.459	1272.5194	2	701.3	65.0%	1	K.LSLLLNDISRK.S	2

gi|93277122|ref|NP_00

364

40314

7.1

RNA-binding protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14290.14290.2	2.7845	0.1963	929.953	930.1287	1	697.6	92.9%	4	K.LFIGNLPR.E	2
*	step05.10285.10285.2	3.4051	0.3409	1441.693	1441.6084	1	1197.0	75.0%	2	K.LHVGNISPTCTNK.E	2

U	gi\|302699245\|ref\|NP_0	6	8	5.7%	1606	176206	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 6 [Homo sapiens]
U	gi\|38201627\|ref\|NP_93	6	8	6.1%	1512	166588	5.2	eukaryotic translation initiation factor 4 gamma 1 isoform 2 [Homo sapiens]
U	gi\|38201625\|ref\|NP_93	6	8	6.4%	1435	158516	5.2	eukaryotic translation initiation factor 4 gamma 1 isoform 3 [Homo sapiens]
U	gi\|38201623\|ref\|NP_93	6	8	5.8%	1599	175460	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 5 [Homo sapiens]
U	gi\|302699247\|ref\|NP_0	6	8	5.7%	1606	176206	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 6 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.6905.6905.2	2.8779	0.3815	725.114	724.8314	1	824.3	85.7%	2	R.GPAGLGPR.R	2
step05.11611.11611.2	2.4385	0.2559	1589.906	1589.8176	1	318.3	50.0%	1	K.VPTTEKPTVTVNFR.K	2 2
step05.6877.6877.2	2.3336	0.4625	935.064	935.06226	1	336.6	72.2%	1	R.GGPPGPPISR.G	2 2
step05.12438.12438.2	3.3803	0.4129	1972.613	1973.1791	1	700.5	50.0%	1	K.ITKPGSIDSNNQLFAPGGR.L	2 2
step03.10366.10366.3	3.6862	0.3088	2505.977	2504.6135	1	614.5	27.9%	1	K.GSSGGSGAKPSDAASEAARPATSTLNR.F	3 3
step06.23712.23712.2	2.9604	0.3247	1515.382	1514.8687	1	599.3	53.8%	2	K.AASLLLEILGLLCK.S	2 2

Similarities: gi|302699237|ref|NP_8(5:1)

gi|21281677|ref|NP_64

5.7%

951

105322

7.5

WD repeat-containing protein 36 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16516.16516.2	3.5151	0.3921	1538.461	1538.7755	1	943.5	73.1%	2	R.ALGLFSNDIPHVVR.F	2
*	step06.18552.18552.2	3.7061	0.3595	1711.103	1710.9166	1	899.3	76.9%	1	K.FRQDWGPITSISFR.T	2
*	step05.14501.14501.2	2.6225	0.4167	1225.489	1225.4612	1	1118.6	80.0%	2	K.STIGAYFLKPK.E	2
*	step06.20139.20139.2	3.2655	0.2985	1612.521	1612.9391	1	528.4	60.7%	2	K.SAPFFIPTIPGLVPR.Y	2

U	gi\|13489083\|ref\|NP_06	3	4	5.7%	793	88952	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 5 [Homo sapiens]
U	gi\|255918200\|ref\|NP_0	3	4	5.7%	791	88909	4.6	serine/threonine-protein phosphatase 6 regulatory subunit 3 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18738.18738.2	2.8088	0.1624	1004.233	1004.29065	2	755.4	92.9%	2	R.KLIEFLLK.A	2 2
step06.17802.17802.3	4.1692	0.31	2507.494	2507.865	1	1283.1	33.0%	1	R.IANCIVHSTDKGPNSALVQQLIK.D	3 3
step02.2057.2057.2	2.4101	0.209	1600.188	1599.6399	1	349.0	57.7%	1	K.FADQDDIGNVSFDR.V	2 2

Similarities: gi|255918192|ref|NP_0(3:0)

gi|4585643|ref|NP_003

5.7%

627

70587

7.5

zinc finger protein 264 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16387.16387.2	3.7801	0.2797	2251.141	2251.3691	1	496.7	33.3%	2	R.HQRIHTGEKPFVCS#ECGK.A	2
	step04.13471.13471.2	2.419	0.3496	2178.953	2179.3616	3	353.9	44.1%	1	R.HFSIHTGEKPYECVECGK.A	2 2
	step04.13655.13655.3	4.6107	0.4063	2179.788	2179.3616	1	935.3	41.2%	2	R.HFSIHTGEKPYECVECGK.A	3 3

Similarities: gi|143771699|ref|NP_0(2:1)

gi|56550051|ref|NP_00

5.7%

565

65381

8.9

U4/U6.U5 tri-snRNP-associated protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19567.19567.2	2.8936	0.419	1264.293	1264.5739	1	594.0	77.8%	2	K.LPPYLIFCIK.R	2
*	step05.17893.17893.3	5.6359	0.3066	2593.135	2592.9333	1	1402.8	40.5%	2	K.NNFFVEKNPTIVNFPITNVDLR.E	3

U	gi\|223278379\|ref\|NP_0	5	9	5.6%	1297	143702	8.8	RRP12-like protein isoform 1 [Homo sapiens]
U	gi\|223278381\|ref\|NP_0	5	9	5.8%	1236	137114	8.7	RRP12-like protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.20033.20033.2	2.5046	0.1564	1374.15	1373.4623	1	574.7	63.0%	1	R.KCLQS#LCDLR.L	2
step06.21729.21729.2	3.2329	0.5107	1846.771	1847.1882	1	912.0	60.0%	2	R.LGFFTTYFLPLANTLK.S	2
step05.19939.19939.2	4.8322	0.5845	2473.747	2472.8257	1	1024.4	50.0%	2	K.NFLPILFNLYGQPVAAGDTPAPR.R	2
step03.6384.6384.2	2.477	0.3199	996.035	996.14557	2	555.4	72.2%	2	R.VLATQPGPGR.G	2
step05.14035.14035.2	2.8621	0.29	1532.514	1532.7278	5	305.9	54.2%	2	K.GRPDPYAYIPLNR.S	2

gi|19923142|ref|NP_00

876

97170

4.8

importin subunit beta-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.413.413.3	4.3406	0.3715	1760.452	1760.1105	1	1920.1	51.7%	2	K.GALQYLVPILTQTLTK.Q	3
*	step06.370.370.2	3.7899	0.348	1760.83	1760.1105	1	861.7	70.0%	5	K.GALQYLVPILTQTLTK.Q	2
*	step06.22546.22546.2	3.3021	0.3515	2248.817	2247.5735	1	438.8	47.2%	2	R.IQFNDLQSLLCATLQNVLR.K	2
*	step06.19061.19061.2	3.7888	0.5361	1630.655	1630.9747	1	615.8	73.1%	2	K.YM*EAFKPFLGIGLK.N	2

U	gi\|34222389\|ref\|NP_89	2	5	5.6%	625	68726	7.9	tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]
U	gi\|51173878\|ref\|NP_07	2	5	5.6%	625	68726	7.9	tRNA (uracil-5-)-methyltransferase homolog A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14885.14885.3	5.9953	0.4887	2335.131	2334.6064	1	2156.8	45.2%	3	K.YKGGTCAVAAPFDTVHIPEATK.Q	3
	step05.11437.11437.2	3.0088	0.4493	1344.183	1343.4731	1	846.3	70.8%	2	K.TSLAQHFTAGPGR.A	2

U	gi\|4557703\|ref\|NP_000	4	5	5.6%	645	65865	8.0	keratin 2a [Homo sapiens]
U	gi\|47132620\|ref\|NP_00	4	5	5.6%	639	65433	8.0	keratin, type II cytoskeletal 2 epidermal [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.10300.10300.2	4.1874	0.5723	1321.316	1321.343	1	886.4	76.7%	2	R.HGGGGGGFGGGGFGSR.S	2
step02.9348.9350.2	4.3613	0.1817	1476.518	1476.6593	1	1617.5	86.4%	1	R.FLEQQNQVLQTK.W	2 2
step02.7344.7344.1	1.9981	0.1448	973.56	974.0935	2	249.9	64.3%	1	K.IEISELNR.V	1 1
step02.7275.7275.2	2.2971	0.1417	973.937	974.0935	1	821.6	92.9%	1	K.IEISELNR.V	2 2

Similarities: gi|119395750|ref|NP_0(3:1)

gi|282165733|ref|NP_9

571

64350

6.8

RUN and FYVE domain-containing protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17010.17010.2	2.3669	0.2245	1297.783	1296.4407	1	658.4	56.7%	2	K.T#PLGKGRAFIR.F	2
*	step02.18426.18428.2	2.8625	0.0922	2591.774	2591.804	1	233.0	25.0%	1	R.RDAM*Y#QEELGGQRDLVQAMKR.R	2

gi|40018640|ref|NP_07

531

60577

9.6

parafibromin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18804.18804.2	3.2875	0.3953	1133.577	1133.3652	1	997.2	83.3%	4	K.NIFAILQSVK.A	2
*	step06.21333.21333.2	4.8888	0.5556	2082.81	2083.5645	1	1613.3	78.9%	2	R.TPIIIIPAATTSLITMLNAK.D	2

gi|4506387|ref|NP_002

409

43171

4.8

UV excision repair protein RAD23 homolog B [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.7511.7511.2	2.4455	0.0884	1424.332	1423.5933	1	695.6	68.2%	1	K.ILNDDTALKEYK.I	2
*	step05.12545.12545.2	3.0749	0.1339	1278.404	1278.589	2	602.5	70.0%	2	K.NFVVVM*VTKPK.A	2

U	gi\|282394030\|ref\|NP_5	3	4	5.5%	1070	115861	8.9	E3 ubiquitin-protein ligase MIB2 isoform 1 [Homo sapiens]
U	gi\|282394036\|ref\|NP_0	3	4	5.9%	1005	108889	8.8	E3 ubiquitin-protein ligase MIB2 isoform 4 [Homo sapiens]
U	gi\|282394034\|ref\|NP_0	3	4	5.6%	1056	114326	8.8	E3 ubiquitin-protein ligase MIB2 isoform 3 [Homo sapiens]
U	gi\|282394032\|ref\|NP_0	3	4	5.5%	1066	115415	8.9	E3 ubiquitin-protein ligase MIB2 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.17755.17755.2	4.2568	0.4591	1907.537	1908.1102	1	1172.5	78.1%	1	K.KEDGFTALHLAALNNHR.E	2 2
step05.18655.18655.2	4.2418	0.3951	2326.977	2325.6526	1	490.2	43.2%	1	R.HQLLPLVADGAGGDPGPLQLLSR.L	2 2
step05.7086.7086.2	3.7478	0.4767	1845.975	1846.0372	1	789.5	63.9%	2	K.LRPDGSEVASAAPAPGPPR.Q	2

Similarities: gi|282394038|ref|NP_0(2:1)

gi|15553127|ref|NP_00

5.5%

917

102380

6.1

hexokinase-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15900.15900.3	3.7035	0.0812	2402.404	2401.5403	2	534.4	28.3%	1	R.LRS#T#IGVDGSVYKKHPHFAK.R	3
*	step02.11600.11600.3	3.7559	0.193	3492.243	3492.8665	5	237.5	15.9%	1	K.VTVGVDGT#LY#KLHPHFAKVMHETVKDLAPK.C	3

gi|77404397|ref|NP_05

5.5%

910

101997

7.2

staphylococcal nuclease domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18676.18676.3	3.6106	0.3627	1785.158	1785.102	1	874.6	50.0%	1	K.LRPLYDIPYMFEAR.E	3
*	step05.18718.18718.2	3.2332	0.3042	1785.995	1785.102	2	441.9	50.0%	2	K.LRPLYDIPYMFEAR.E	2
*	step05.15025.15025.3	4.6801	0.4189	2750.19	2749.0715	1	1336.6	37.5%	2	K.KVNVTVDYIRPASPATETVPAFSER.T	3
*	step06.17757.17757.2	2.8507	0.4075	1397.516	1397.5624	1	1170.8	75.0%	1	K.IHVFYIDYGNR.E	2

gi|47419936|ref|NP_00

5.5%

655

74325

6.2

serine/threonine-protein kinase SRPK1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19205.19205.2	4.0276	0.4113	1769.615	1770.0654	1	926.3	67.9%	1	K.IIQQVLQGLDYLHTK.C	2
*	step05.17692.17692.3	5.3164	0.4405	2510.083	2509.8857	1	2959.4	50.0%	2	R.IIHTDIKPENILLSVNEQYIR.R	3

U	gi\|212549736\|ref\|NP_0	2	2	5.5%	599	66856	5.6	anaphase-promoting complex subunit 7 isoform a [Homo sapiens]
U	gi\|212549738\|ref\|NP_0	2	2	6.1%	537	60002	8.4	anaphase-promoting complex subunit 7 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.11292.11292.3	4.1786	0.2836	2575.129	2573.7922	18	360.0	28.3%	1	K.VRPSTGNSASTPQSQCLPSEIEVK.Y	3
	step03.13516.13516.2	3.45	0.408	1113.308	1113.2942	1	1439.9	93.8%	1	R.VQEAIIHFR.E	2

U	gi\|15812186\|ref\|NP_03	2	2	5.5%	471	54561	5.0	F-box only protein 3 isoform 1 [Homo sapiens]
U	gi\|15812188\|ref\|NP_20	2	2	6.3%	415	47530	6.6	F-box only protein 3 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19213.19213.2	3.3908	0.1572	1828.359	1828.1716	1	882.3	62.5%	1	K.LVVPGLLGSMALSNHYR.S	2
	step05.13046.13046.2	2.4502	0.3257	1167.014	1167.3588	1	624.2	75.0%	1	R.FHMACPTFR.V	2

U	gi\|109948285\|ref\|NP_0	2	3	5.5%	200	22799	9.1	polyadenylate-binding protein 1-like 2 [Homo sapiens]
U	gi\|61175237\|ref\|NP_00	2	3	5.5%	200	22799	9.1	polyadenylate-binding protein 1-like 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14659.14659.1	1.91	0.2521	1157.711	1158.3749	1	259.3	65.0%	1	K.FSPAGPILSIR.I	1 1 1 1
	step05.14614.14614.2	2.2341	0.3204	1158.005	1158.3749	1	574.1	90.0%	2	K.FSPAGPILSIR.I	2 2 2 2

Similarities: gi|46367787|ref|NP_00(2:0)
gi|45238849|ref|NP_11(2:0)
gi|185135971|ref|NP_0(2:0)

gi|110347427|ref|NP_0

5.4%

3546

404234

5.8

ubiquitin carboxyl-terminal hydrolase 34 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17456.17456.2	2.772	0.2854	1346.592	1346.5984	1	785.1	80.0%	2	R.YIHDLFPSLIK.N	2
*	step05.14172.14172.2	2.8612	0.279	1346.981	1345.5956	1	674.4	66.7%	1	R.KGEFPGGLMGPVR.M	2
*	step05.1620.1620.2	3.8058	0.4154	2346.058	2345.7222	1	997.5	45.2%	2	K.FVAAGGLQQLLEIFNSGILEPK.E	2
*	step05.15899.15899.2	2.9502	0.3066	1355.376	1354.6636	1	598.1	63.6%	1	K.KLTLLIPETAVR.H	2
*	step06.21375.21375.2	4.1591	0.4063	1277.431	1277.5775	1	1752.6	86.4%	4	R.SFLLLAASTLLK.F	2
*	step05.13835.13835.2	3.3309	0.4099	1369.324	1369.6367	1	431.5	68.2%	2	K.FLPDAQALKPIR.I	2
*	step06.23083.23083.2	3.5512	0.3503	1534.45	1533.8787	1	546.4	66.7%	1	R.DIFNLLFLLPSLK.D	2
*	step06.17544.17544.2	2.6425	0.3257	1475.941	1475.6763	3	173.2	59.1%	1	K.EKVNTHFSFPLR.L	2
*	step05.14956.14956.2	3.4725	0.4186	1218.553	1218.3888	1	887.8	94.4%	2	K.VNTHFSFPLR.L	2
*	step05.14058.14058.2	2.2425	0.0935	1342.507	1341.4537	14	376.2	48.1%	1	K.THSAY#MLFYK.R	2
*	step05.12600.12600.2	2.7743	0.2133	1039.351	1039.2501	1	937.4	85.7%	2	R.LCIHVIQR.L	2
*	step05.13326.13326.2	2.719	0.4002	1131.309	1131.3112	1	1124.1	93.8%	2	R.FLLAHNYPR.V	2
*	step06.20537.20537.2	2.8826	0.2521	1841.157	1840.1125	1	631.1	56.2%	2	R.TSAAYLLVSLIPSNSFR.Q	2
*	step05.12895.12895.2	2.6219	0.158	2397.474	2396.3984	18	233.8	23.8%	1	R.DSSIIDPGTEQDLPS#PENSSVK.E	2
*	step05.17407.17407.3	4.1334	0.3918	2072.053	2072.3276	1	589.0	40.6%	1	R.GLFSHMQQHDILDTLCR.T	3
*	step06.18979.18979.2	4.8218	0.5535	2072.546	2072.3276	1	1602.6	68.8%	1	R.GLFSHMQQHDILDTLCR.T	2

gi|155722990|ref|NP_0

5.4%

796

88814

5.2

kanadaptin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16083.16083.2	2.8754	0.2969	2471.642	2471.7483	1	571.0	40.9%	1	R.APPYQEPPWGGPATAPYSLETLK.G	2
*	step04.14190.14190.2	2.4101	0.189	1082.535	1082.2369	1	610.0	75.0%	1	K.KALQGFFDR.E	2
*	step03.13174.13174.2	2.9387	0.3244	1238.262	1237.5134	1	522.7	75.0%	2	K.IVKPAEIPELK.K	2

gi|4507943|ref|NP_003

1071

123386

6.1

exportin-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20825.20825.3	3.6468	0.2141	2542.022	2542.783	2	1019.8	33.3%	1	K.LDINLLDNVVNCLYHGEGAQQR.M	3
*	step06.19926.19926.2	3.8963	0.3733	1185.471	1185.5482	2	1666.9	88.9%	1	K.LNMILVQILK.Q	2
*	step03.1522.1522.3	4.1697	0.3587	2847.077	2846.2075	1	880.2	30.2%	1	R.SNDPQMVAENFVPPLLDAVLIDYQR.N	3

gi|42542392|ref|NP_00

1054

120974

5.9

CCAAT/enhancer-binding protein zeta [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.14770.14770.2	2.3015	0.1402	1304.812	1305.5063	1	1084.7	83.3%	1	K.LYQHEINLFK.S	2
*	step06.17801.17801.2	4.6729	0.4665	2095.005	2095.3442	1	1108.2	67.6%	2	R.IFSQRPFDKLEQLSSGNK.D	2
*	step06.17754.17754.3	3.6209	0.2009	2095.119	2095.3442	1	1860.1	45.6%	1	R.IFSQRPFDKLEQLSSGNK.D	3
*	step06.17853.17853.3	3.5927	0.3908	2453.829	2453.696	1	531.9	36.2%	1	R.IFSQRPFDKLEQLSSGNKDSR.D	3
*	step04.16636.16636.2	3.2374	0.4152	1285.389	1285.5084	1	1346.4	80.0%	2	K.ASHLLETLLCK.H	2
*	step05.15841.15841.2	3.9506	0.4828	1669.967	1670.8925	1	1276.7	84.6%	1	K.KPEVASWVHFDNLK.G	2

gi|282394038|ref|NP_0

753

82129

7.6

E3 ubiquitin-protein ligase MIB2 isoform 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17755.17755.2	4.2568	0.4591	1907.537	1908.1102	1	1172.5	78.1%	1	K.KEDGFTALHLAALNNHR.E	2 2
	step05.18655.18655.2	4.2418	0.3951	2326.977	2325.6526	1	490.2	43.2%	1	R.HQLLPLVADGAGGDPGPLQLLSR.L	2 2

Similarities: gi|282394030|ref|NP_5(2:0)

gi|82546824|ref|NP_00

733

75457

9.3

forkhead box protein K1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12432.12432.2	2.956	0.2571	2425.59	2426.7258	1	727.6	47.8%	2	R.SMVSPVPSPTGTISVPNSCPASPR.G	2
*	step06.14637.14637.2	3.305	0.4745	1505.67	1506.7122	1	648.5	67.9%	3	R.SAPASPTHPGLMSPR.S	2

U	gi\|61744475\|ref\|NP_00	3	9	5.3%	661	71123	5.0	4F2 cell-surface antigen heavy chain isoform a [Homo sapiens]
U	gi\|65506891\|ref\|NP_00	3	9	5.6%	630	67994	5.0	4F2 cell-surface antigen heavy chain isoform c [Homo sapiens]
U	gi\|61744483\|ref\|NP_00	3	9	6.6%	529	57945	5.3	4F2 cell-surface antigen heavy chain isoform f [Homo sapiens]
U	gi\|61744481\|ref\|NP_00	3	9	6.2%	568	61816	5.2	4F2 cell-surface antigen heavy chain isoform e [Homo sapiens]
U	gi\|61744479\|ref\|NP_00	3	9	5.8%	599	64873	5.1	4F2 cell-surface antigen heavy chain isoform d [Homo sapiens]
U	gi\|61744477\|ref\|NP_00	3	9	5.5%	631	68101	5.0	4F2 cell-surface antigen heavy chain isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15937.15937.2	2.5319	0.1701	1271.345	1270.317	3	606.1	54.2%	3	K.WWHT#GALYR.I	2
step06.20043.20043.2	4.3398	0.4938	1374.072	1372.6805	1	1041.8	86.4%	5	R.LLTSFLPAQLLR.L	2
step02.18323.18323.2	2.4348	0.2097	1506.503	1506.6423	1	561.8	61.5%	1	K.GQSEDPGSLLSLFR.R	2

U	gi\|302699237\|ref\|NP_8	5	6	5.2%	1600	175588	5.3	eukaryotic translation initiation factor 4 gamma 1 isoform 1 [Homo sapiens]
U	gi\|302699239\|ref\|NP_0	5	6	6.0%	1404	154932	5.2	eukaryotic translation initiation factor 4 gamma 1 isoform 4 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.11611.11611.2	2.4385	0.2559	1589.906	1589.8176	1	318.3	50.0%	1	K.VPTTEKPTVTVNFR.K	2 2
step05.6877.6877.2	2.3336	0.4625	935.064	935.06226	1	336.6	72.2%	1	R.GGPPGPPISR.G	2 2
step05.12438.12438.2	3.3803	0.4129	1972.613	1973.1791	1	700.5	50.0%	1	K.ITKPGSIDSNNQLFAPGGR.L	2 2
step03.10366.10366.3	3.6862	0.3088	2505.977	2504.6135	1	614.5	27.9%	1	K.GSSGGSGAKPSDAASEAARPATSTLNR.F	3 3
step06.23712.23712.2	2.9604	0.3247	1515.382	1514.8687	1	599.3	53.8%	2	K.AASLLLEILGLLCK.S	2 2

Similarities: gi|302699245|ref|NP_0(5:0)

U	gi\|108773782\|ref\|NP_0	2	3	5.2%	599	67314	8.3	ATP-binding cassette sub-family E member 1 [Homo sapiens]
U	gi\|108773784\|ref\|NP_0	2	3	5.2%	599	67314	8.3	ATP-binding cassette sub-family E member 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.19027.19027.2	4.523	0.4048	1988.464	1988.31	1	1950.2	70.6%	2	K.KCPFGALSIVNLPSNLEK.E	2
	step04.13273.13273.2	2.6921	0.1646	1513.591	1513.8059	1	591.0	66.7%	1	K.AIIKPQYVDQIPK.A	2

U	gi\|239937451\|ref\|NP_0	2	3	5.2%	404	44659	6.5	adenosylhomocysteinase isoform 2 [Homo sapiens]
U	gi\|9951915\|ref\|NP_000	2	3	4.9%	432	47716	6.3	adenosylhomocysteinase isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14635.14635.2	2.7526	0.1431	1057.035	1057.2705	1	771.2	75.0%	2	K.YPQLLPGIR.G	2
	step02.8069.8069.2	2.6781	0.2706	1257.201	1257.4185	1	591.2	72.7%	1	K.VPAINVNDSVTK.S	2

gi|310128854|ref|XP_0

5.1%

2806

310363

6.0

PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 1, partial [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.15085.15085.3	4.1149	0.4184	2058.046	2058.3987	1	1312.8	38.2%	1	K.KLCIPEKTEILAVNVDSK.G	3 3
step02.16164.16164.2	2.616	0.2741	1731.178	1730.0013	2	320.6	46.7%	1	R.NVAIFTAGQESPIILR.D	2 2
step03.14442.14442.2	4.319	0.4456	1514.879	1513.7643	2	820.4	69.2%	2	R.LLTATNLVTLPNSR.G	2 2
step03.14817.14817.3	5.3157	0.3253	2296.368	2296.568	1	3920.1	51.3%	2	R.IGHLLPEEQVYLNQQSGTIR.L	3 3
step04.13511.13511.2	3.4747	0.3503	1603.716	1603.846	1	556.3	53.8%	1	K.YNHLVYSQIPAAVK.L	2 2
step04.13487.13488.2	4.9523	0.5216	2202.806	2202.3667	1	553.6	52.5%	2	R.KEDLFGRPSQGLYSSSASSGK.C	2 2
step05.19775.19775.3	4.0889	0.3983	2141.684	2141.5273	1	1314.1	41.2%	1	R.ILGLCLLQNELCPITLNR.H	3 3
step04.14398.14398.2	4.1293	0.3306	1495.774	1495.8391	1	2111.4	87.5%	2	R.MLVVAEQPLHAMR.K	2 2
step04.13308.13308.2	3.7916	0.4334	1511.156	1511.8385	1	822.6	79.2%	1	R.M*LVVAEQPLHAMR.K	2 2
step04.12781.12781.2	3.5545	0.2411	1512.014	1511.8385	1	1162.5	83.3%	2	R.MLVVAEQPLHAM*R.K	2 2
step05.15283.15283.2	3.0499	0.2751	983.279	983.22986	1	1038.9	93.8%	1	R.KGLLDVLPK.N	2 2

Similarities: gi|15147337|ref|NP_05(11:0)

gi|4758012|ref|NP_004

5.1%

1675

191613

5.7

clathrin heavy chain 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18847.18847.2	2.3267	0.2222	1500.555	1500.7273	1	468.4	54.2%	1	K.WLLLTGISAQQNR.V	2
*	step03.13325.13325.2	3.8031	0.4085	1718.573	1717.9059	1	1084.6	73.3%	1	K.VSQPIEGHAASFAQFK.M	2
*	step06.17260.17260.2	4.2253	0.4253	1945.821	1946.2383	1	886.5	61.8%	1	K.LHIIEVGTPPTGNQPFPK.K	2
*	step05.18242.18242.3	5.136	0.3656	3162.561	3162.6125	1	719.9	30.8%	2	R.LLEMNLMHAPQVADAILGNQMFTHYDR.A	3
*	step05.17076.17076.3	4.8983	0.4221	3178.652	3178.612	1	531.6	34.6%	1	R.LLEMNLMHAPQVADAILGNQM*FTHYDR.A	3
	step04.18822.18822.2	4.5352	0.4617	1354.821	1354.6636	1	2174.0	86.4%	4	R.NLQNLLILTAIK.A	2

gi|32307161|ref|NP_00

776

89678

8.0

cullin-1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18649.18649.3	3.6982	0.2362	2756.59	2755.9795	77	479.4	27.3%	1	K.HLEIFHTEFQNLLDADKNEDLGR.M	3
*	step04.14082.14082.2	4.7638	0.492	1788.828	1788.0408	1	1387.8	73.3%	2	K.LLETHIHNQGLAAIEK.C	2

gi|13129006|ref|NP_07

737

82565

9.2

ATP-dependent RNA helicase DDX50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.1113.1113.2	2.9935	0.2931	1669.446	1669.8132	1	887.7	64.3%	4	K.EGAFSNFPISEETIK.L	2 2
*	step05.20542.20542.2	5.7443	0.5711	2111.74	2112.3315	1	1796.5	59.5%	2	K.GAVDALAAALAHISGASSFEPR.S	2
*	step05.20572.20572.3	3.7181	0.0981	2112.632	2112.3315	2	1015.5	35.7%	1	K.GAVDALAAALAHISGASSFEPR.S	3

Similarities: gi|50659095|ref|NP_00(1:2)

gi|146198654|ref|NP_0

540

60229

8.0

zinc finger protein 768 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14573.14573.2	2.9637	0.377	1572.383	1571.7509	1	581.8	53.6%	3	R.GGQGPRPNICGICGK.S	2
*	step05.12830.12830.2	3.8854	0.4693	1287.41	1286.4647	1	1388.8	77.3%	2	R.FGQSSVLAIHAR.T	2

gi|27735089|ref|NP_77

360

39500

11.0

U7 snRNA-associated Sm-like protein LSm11 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16794.16794.2	2.2848	0.1414	2151.607	2152.0435	74	96.2	23.5%	1	R.GS#HKRSRSVPS#S#LQASAR.E	2
*	step05.1829.1829.2	2.2557	0.0999	2152.1	2152.0435	23	275.5	22.4%	1	R.GS#HKRS#RSVPSSLQAS#AR.E	2

U	gi\|38327632\|ref\|NP_00	2	2	4.9%	876	97174	6.5	epithelial discoidin domain-containing receptor 1 isoform DDR1a [Homo sapiens]
U	gi\|83977452\|ref\|NP_05	2	2	4.7%	919	101796	6.8	epithelial discoidin domain-containing receptor 1 isoform DDR1c [Homo sapiens]
U	gi\|83977450\|ref\|NP_05	2	2	4.7%	913	101128	6.8	epithelial discoidin domain-containing receptor 1 isoform DDR1b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.22708.22708.2	2.5964	0.138	2522.073	2521.765	4	212.2	21.6%	1	-.M*GPEALS#SLLLLLLVAS#GDADMK.G	2
	step06.20691.20691.2	2.2274	0.0874	2294.215	2295.0422	41	264.0	21.1%	1	R.T#IPDS#DISASSSWSDST#AAR.H	2

U	gi\|205277435\|ref\|NP_0	2	2	4.9%	612	69510	7.6	tyrosine-protein kinase SYK isoform 2 [Homo sapiens]
U	gi\|293332611\|ref\|NP_0	2	2	4.9%	612	69510	7.6	tyrosine-protein kinase SYK isoform 2 [Homo sapiens]
U	gi\|293332585\|ref\|NP_0	2	2	4.7%	635	72066	8.2	tyrosine-protein kinase SYK isoform 1 [Homo sapiens]
U	gi\|21361553\|ref\|NP_00	2	2	4.7%	635	72066	8.2	tyrosine-protein kinase SYK isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.802.802.2	2.5787	0.4317	1993.283	1993.9912	1	407.8	32.8%	1	R.QS#RNY#LGGFALSVAHGR.K	2
	step05.17288.17288.2	2.3825	0.1099	1558.841	1557.604	8	446.5	35.4%	1	R.GM*KGS#EVT#AMLEK.G	2

U	gi\|229331967\|ref\|NP_0	2	3	4.9%	552	63283	5.9	serine/threonine-protein kinase RIO2 isoform 1 [Homo sapiens]
U	gi\|229331971\|ref\|NP_0	2	3	5.7%	474	54508	5.4	serine/threonine-protein kinase RIO2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.18899.18899.2	3.6188	0.2462	1749.524	1750.0325	1	1031.5	68.8%	2	K.NHEIVPGSLIASIASLK.H	2
	step06.17922.17922.2	2.5864	0.2872	1275.502	1275.4404	1	644.2	77.8%	1	R.HNVSWLYLSR.L	2

gi|39777586|ref|NP_94

1386

155604

7.7

putative ATP-dependent RNA helicase DHX57 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18461.18461.2	2.713	0.3823	1896.609	1896.1597	1	210.0	53.3%	1	K.ILEM*FSAHNLQSVFSR.L	2
*	step05.16591.16591.2	4.1983	0.4257	1752.555	1752.05	1	1371.4	76.7%	2	R.LTPLGYHLASLPVDVR.I	2
*	step06.20219.20219.2	3.2146	0.352	1084.834	1084.3594	1	1013.8	93.8%	2	K.LMLFGSIFR.C	2
*	step05.18065.18065.2	2.8649	0.3223	1100.193	1100.3588	1	1014.4	93.8%	1	K.LM*LFGSIFR.C	2
*	step04.14776.14776.2	3.3755	0.4077	1549.384	1549.7104	1	1020.3	77.3%	2	R.HFDSPYLLYHEK.I	2
*	step03.13179.13179.2	3.2578	0.3926	1398.57	1399.6198	1	1981.0	91.7%	1	R.FVAASHQVAELVK.E	2

U	gi\|21361745\|ref\|NP_06	3	6	4.8%	672	73653	8.7	spermatid perinuclear RNA-binding protein isoform 1 [Homo sapiens]
U	gi\|283806705\|ref\|NP_0	3	6	4.9%	658	71967	8.7	spermatid perinuclear RNA-binding protein isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.16007.16007.2	3.3941	0.3193	1754.07	1755.0922	1	737.3	64.3%	2	K.VILTSPLIRDELEKK.D	2
step05.13435.13435.2	4.1584	0.4804	1890.606	1891.0748	1	1616.7	71.9%	2	R.GLKYELISETGGSHDKR.F	2 2 2
step04.14049.14049.3	3.9765	0.3622	1891.287	1891.0748	1	893.4	43.8%	2	R.GLKYELISETGGSHDKR.F	3 3 3

Similarities: gi|212549555|ref|NP_0(2:1)
gi|212549553|ref|NP_0(2:1)

gi|7657455|ref|NP_055

588

68003

7.3

pescadillo homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14283.14283.2	2.5071	0.137	1210.486	1210.4497	1	1374.9	88.9%	2	R.FLLHEPIVNK.F	2
*	step06.14860.14860.2	3.3039	0.3699	2005.804	2006.2554	1	501.0	50.0%	2	R.ITHQIVDRPGQQTSVIGR.C	2

U	gi\|110227601\|ref\|NP_0	2	3	4.8%	564	62329	7.0	bifunctional coenzyme A synthase isoform a [Homo sapiens]
U	gi\|205277394\|ref\|NP_0	2	3	4.6%	593	65339	7.6	bifunctional coenzyme A synthase isoform c [Homo sapiens]
U	gi\|110227605\|ref\|NP_0	2	3	4.8%	564	62329	7.0	bifunctional coenzyme A synthase isoform a [Homo sapiens]
U	gi\|110227603\|ref\|NP_0	2	3	4.8%	564	62329	7.0	bifunctional coenzyme A synthase isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.18815.18815.2	3.8904	0.1466	1610.854	1609.935	2	874.0	63.3%	2	R.SGLLVLTTPLASLAPR.L	2
	step03.14880.14880.2	2.2518	0.2368	1665.077	1665.4462	19	183.8	32.0%	1	R.Y#ATSCY#S#CCPR.L	2

gi|23510283|ref|NP_06

547

62259

8.9

elongator complex protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12666.12666.2	2.9424	0.4174	1810.99	1811.1196	1	339.5	53.3%	1	K.VVAHMMPDLPNVGLER.D	2
*	step05.17090.17092.2	2.7369	0.272	1166.245	1166.4401	3	459.4	77.8%	1	R.ILALVPPWTR.V	2

gi|39812229|ref|NP_00

539

60666

5.1

importin subunit alpha-6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.15922.15922.2	3.1157	0.3788	1531.294	1531.8048	1	1038.8	81.8%	2	R.RLVELLMHNDYK.V	2 2 2
	step03.18346.18346.2	3.9367	0.3665	1553.504	1552.8436	1	2172.8	84.6%	2	K.IVQVALNGLENILR.L	2 2 2

Similarities: gi|222144293|ref|NP_0(2:0)
gi|6912478|ref|NP_036(2:0)

gi|24431950|ref|NP_00

522

58449

7.4

U4/U6 small nuclear ribonucleoprotein Prp4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17195.17195.2	2.7523	0.1192	1725.67	1724.9781	1	552.9	65.4%	2	K.LWSVPDCNLLHTLR.G	2
*	step06.17635.17635.2	2.4466	0.2969	1322.438	1322.5387	1	716.7	75.0%	1	K.IWTHPGWSPLK.T	2

gi|91208426|ref|NP_00

4.7%

2335

273599

8.8

pre-mRNA-processing-splicing factor 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16094.16094.2	3.4251	0.32	1706.632	1707.0099	1	546.0	66.7%	1	R.WQFTLPMMSTLYR.L	2
*	step03.9124.9124.2	2.9202	0.3833	1084.704	1085.3025	1	1143.3	85.0%	3	K.ALNM*AIPGGPK.F	2
*	step05.17041.17041.2	3.0381	0.3387	1353.774	1354.5391	1	1213.2	80.0%	2	R.TILQHLSEAWR.C	2
*	step05.18082.18082.2	3.2007	0.4356	1550.494	1550.8911	1	499.3	73.1%	2	K.VPGLPTPIENMILR.Y	2
*	step06.19025.19025.2	2.8764	0.339	1394.351	1393.6536	1	613.8	86.4%	3	R.FSPIPFPPLSYK.H	2
*	step04.15955.15955.2	2.6162	0.1112	2255.624	2256.6323	12	199.2	30.0%	2	K.ELGGLGMLSMGHVLIPQSDLR.W	2
*	step03.827.827.2	3.49	0.3741	2083.904	2084.3801	1	967.2	59.4%	1	K.ATEPQMVLFNLYDDWLK.T	2
*	step05.12223.12224.2	2.7243	0.2862	1066.477	1066.239	2	856.8	83.3%	1	R.AISAANLHLR.T	2

U	gi\|226497574\|ref\|NP_0	3	5	4.7%	960	107332	6.5	probable RNA-binding protein 19 [Homo sapiens]
U	gi\|226497734\|ref\|NP_0	3	5	4.7%	960	107332	6.5	probable RNA-binding protein 19 [Homo sapiens]
U	gi\|226497654\|ref\|NP_0	3	5	4.7%	960	107332	6.5	probable RNA-binding protein 19 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.15888.15888.2	2.4322	0.3528	816.094	815.98096	1	1277.9	100.0%	1	K.FGFIGFK.S	2
step06.18528.18528.2	3.6341	0.4389	1714.877	1715.0963	1	766.8	67.9%	1	K.NVM*EFLAPLKPVAIR.I	2
step06.21126.21126.2	3.0545	0.3258	2387.387	2386.6514	1	574.5	43.2%	3	K.NLPAGTLAAQLQETFGHFGSLGR.V	2

gi|13562114|ref|NP_11

4.7%

451

50327

5.2

tubulin beta-1 chain [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.11320.11320.2	3.0929	0.3358	1130.76	1131.2664	1	905.4	94.4%	4	R.FPGQLNADLR.K	2 2 2 2 2 2 2 2 2
step05.10818.10818.1	1.8152	0.1126	1258.713	1259.4392	1	313.3	60.0%	1	R.FPGQLNADLRK.L	1 1 1 1 1 1 1 1 1
step05.11218.11219.2	2.7952	0.2822	1260.2	1259.4392	1	953.1	85.0%	6	R.FPGQLNADLRK.L	2 2 2 2 2 2 2 2 2
step06.17637.17637.2	3.5322	0.4873	1273.324	1272.5878	1	1276.5	85.0%	5	R.KLAVNMVPFPR.L	2 2 2 2 2 2 2 2
step06.16197.16197.2	3.5579	0.4838	1287.965	1288.5872	1	1079.2	90.0%	3	R.KLAVNM*VPFPR.L	2 2 2 2 2 2 2 2
step04.14925.14926.1	2.8788	0.3227	1144.203	1144.4148	7	272.2	66.7%	2	K.LAVNMVPFPR.L	1 1 1 1 1 1 1 1
step05.14878.14879.2	4.0156	0.4698	1145.278	1144.4148	1	996.5	94.4%	11	K.LAVNMVPFPR.L	2 2 2 2 2 2 2 2
step04.13422.13423.2	3.8664	0.3852	1160.598	1160.4142	1	1041.8	88.9%	7	K.LAVNM*VPFPR.L	2 2 2 2 2 2 2 2

gi|76781492|ref|NP_06

4.7%

422

46672

9.8

RNA exonuclease 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10908.10908.2	2.4319	0.2416	1285.011	1285.475	1	813.6	68.2%	1	R.TAVSGIRPENLK.Q	2
*	step04.13651.13651.2	2.6996	0.3403	968.599	969.16174	1	678.7	85.7%	2	K.VLFLDHPK.K	2

gi|21735550|ref|NP_00

954

103695

7.0

mitogen-activated protein kinase kinase kinase 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.1655.1655.2	2.2875	0.2344	1557.221	1556.7941	1	417.4	65.4%	1	R.ALWRGEEVAVKAAR.L	2
*	step05.11113.11113.2	2.268	0.1539	1409.858	1409.5077	4	364.0	42.4%	1	K.ITVQASPT#LDKR.K	2
*	step03.11480.11480.2	2.4277	0.1018	1803.618	1803.954	16	324.1	38.2%	1	K.GLGEGSKQWSSSAPNLGK.S	2

gi|31377705|ref|NP_07

865

96981

5.0

centrosomal protein of 97 kDa [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.578.578.3	3.5776	0.138	2818.917	2819.0835	4	551.2	23.7%	1	-.MAVARVDAALPPGEGS#VVNWSGQGLQK.L	3
*	step04.11520.11520.2	2.2173	0.1306	1357.814	1357.5812	6	215.5	50.0%	1	R.SVALGQDKVALQK.L	2

gi|4758138|ref|NP_004

614

69148

8.9

probable ATP-dependent RNA helicase DDX5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8993.8993.2	2.732	0.1714	1390.871	1390.4851	1	471.9	70.0%	1	K.NFYQEHPDLAR.R	2
*	step02.13546.13546.2	3.4115	0.303	2133.425	2133.2615	2	321.0	43.8%	2	K.FVINYDYPNSSEDYIHR.I	2

gi|296317280|ref|NP_0

439

49978

5.5

E3 ubiquitin-protein ligase UBR2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12787.12787.2	2.9107	0.1363	1483.977	1484.6832	3	562.6	68.2%	1	R.EVYQHLAHYVPK.I	2 2
	step03.8109.8109.2	2.4913	0.17	885.392	885.00165	4	497.2	71.4%	1	R.GPNPFPQK.E	2 2

Similarities: gi|27597061|ref|NP_05(2:0)

gi|4506209|ref|NP_002

433

48634

5.9

26S protease regulatory subunit 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.7636.7636.2	3.03	0.257	889.187	888.04376	1	1141.4	92.9%	1	K.INELTGIK.E	2
*	step05.14612.14612.2	2.9131	0.2817	1143.471	1143.3602	1	699.8	63.6%	2	K.GVLLFGPPGTGK.T	2

gi|226958483|ref|NP_0

412

47565

9.1

putative zinc finger protein 735 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13442.13442.2	2.5768	0.1345	2396.208	2397.511	1	472.1	31.5%	1	K.THKIIHTGEKPYT#CEECGR.T	2
*	step04.13295.13295.3	3.6359	0.1648	2396.732	2397.511	7	593.3	29.6%	2	K.THKIIHTGEKPYT#CEECGR.T	3

gi|171460958|ref|NP_0

4.5%

688

80302

8.5

nucleolar protein 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17413.17413.2	3.3765	0.3362	1547.893	1547.8889	1	733.3	65.4%	2	K.MGIYYIPVLGPAPR.W	2
*	step05.19226.19226.2	3.6329	0.4339	1896.053	1896.1793	1	849.2	53.1%	1	K.DLENLGLTHLIGSPFLR.A	2

U	gi\|13376181\|ref\|NP_07	3	7	4.5%	446	49909	6.0	tubulin alpha chain-like 3 isoform 1 [Homo sapiens]
U	gi\|285395246\|ref\|NP_0	3	7	4.9%	406	45518	6.3	tubulin alpha chain-like 3 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.12890.12890.2	2.918	0.2328	1250.069	1250.4795	1	908.5	93.8%	1	K.YMACCLLYR.G	2 2 2 2 2
step03.14208.14208.2	3.0379	0.4215	1381.712	1381.6246	1	519.0	80.0%	4	R.LDHKFDLMYAK.R	2 2 2 2 2 2 2
step03.14270.14270.3	3.8764	0.434	1382.966	1381.6246	1	1585.0	67.5%	2	R.LDHKFDLMYAK.R	3 3 3 3 3 3 3

gi|28372497|ref|NP_77

1749

200209

6.0

E3 ubiquitin-protein ligase UBR1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.11075.11075.2	2.6684	0.2465	1371.344	1371.4768	3	411.5	59.1%	1	K.TGPFCVNHEPGR.A	2
*	step05.15990.15990.2	2.4898	0.2267	1620.434	1620.9164	2	527.7	54.2%	1	K.YILISKPTIWTER.L	2
*	step06.19453.19453.2	3.128	0.2657	1002.23	1002.27795	1	1307.6	92.9%	1	K.FLLLVLQR.Y	2
*	step05.17342.17342.2	3.3727	0.4647	2072.878	2073.4817	1	454.2	47.1%	1	R.EIIHLLCIEPMPHSAIAK.N	2
*	step05.17320.17320.3	3.9571	0.328	2073.376	2073.4817	1	908.0	39.7%	1	R.EIIHLLCIEPMPHSAIAK.N	3
*	step05.16217.16217.2	3.6586	0.487	1821.734	1822.1752	1	852.3	66.7%	2	K.SLCNTVIPIIPLQPQK.I	2
*	step04.15898.15898.2	2.4991	0.364	1096.275	1096.3881	1	870.1	77.8%	2	R.LLSVVLPNIK.S	2

U	gi\|21327715\|ref\|NP_00	3	3	4.4%	1098	123901	8.6	transcription elongation regulator 1 isoform 1 [Homo sapiens]
U	gi\|91208418\|ref\|NP_00	3	3	4.5%	1077	121690	8.5	transcription elongation regulator 1 isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.14022.14022.3	3.7688	0.1996	2147.717	2147.045	1	1101.5	28.9%	1	K.EPS#EEPLPMET#EEEDPK.E	3
step04.1058.1058.2	2.3491	0.0903	1978.089	1979.0337	52	285.0	28.6%	1	K.QVFDQYVKT#RAEEER.R	2
step02.1532.1532.2	2.254	0.1517	1984.326	1983.0067	70	156.5	26.7%	1	K.FNPRAT#FS#EFAAKHAK.D	2

U	gi\|310114346\|ref\|XP_0	2	2	4.4%	824	89794	8.5	PREDICTED: rootletin-like [Homo sapiens]
U	gi\|310126570\|ref\|XP_0	2	2	4.0%	899	98456	7.9	PREDICTED: hypothetical protein LOC100510050 [Homo sapiens]
U	gi\|310119144\|ref\|XP_0	2	2	2.3%	1590	175712	6.8	PREDICTED: rootletin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.7752.7752.2	2.2314	0.0876	1417.371	1416.5623	69	235.8	54.2%	1	R.RQGTETGEPLLSK.C	2
	step06.18514.18514.3	3.6043	0.1082	2718.264	2717.7117	170	207.5	19.5%	1	R.GAQPRSLVALRGHQRAVS#T#QTS#R.Q	3

gi|21327667|ref|NP_05

746

83630

6.2

ribosome biogenesis protein BOP1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16675.16675.2	2.3576	0.1222	861.158	861.0664	1	454.8	83.3%	1	R.KLSFLPR.K	2
*	step03.381.381.3	6.4649	0.5392	2815.33	2815.1318	1	3018.7	43.0%	4	R.DLGVLDVIFHPTQPWVFSSGADGTVR.L	3

gi|32307144|ref|NP_00

727

83550

6.9

procollagen-lysine,2-oxoglutarate 5-dioxygenase 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15594.15594.2	4.0599	0.3095	1629.007	1628.8523	1	949.0	63.3%	2	R.FLGSGGFIGYAPNLSK.L	2
*	step05.19549.19549.2	2.636	0.1868	1879.32	1879.2335	1	597.4	63.3%	1	R.VGVWNVPYISNIYLIK.G	2

U	gi\|223890246\|ref\|NP_0	2	3	4.4%	712	82405	6.3	muskelin isoform 1 [Homo sapiens]
U	gi\|31881798\|ref\|NP_03	2	3	4.2%	735	84768	6.3	muskelin isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.14037.14037.2	3.8648	0.3388	1500.456	1500.6826	1	1303.7	81.8%	2	R.FAHQLVYDELHK.V	2
	step02.21059.21059.2	3.898	0.3918	2200.25	2199.511	1	612.0	38.9%	1	R.TQLFDTLVNFFPDSMTPPK.G	2

gi|22749365|ref|NP_68

433

48957

6.9

zinc finger and SCAN domain-containing protein 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15958.15958.2	2.6316	0.0934	2397.83	2397.707	2	274.6	29.6%	1	R.VHQIIHTGKKPFTCS#M*CKK.S	2
*	step04.13840.13840.2	3.0713	0.0831	2398.472	2397.707	1	260.3	29.6%	1	R.VHQIIHTGKKPFT#CSM*CKK.S	2

gi|20336298|ref|NP_61

4.3%

585

64137

9.9

probable ATP-dependent RNA helicase DDX31 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.12347.12347.2	2.8909	0.2569	1629.458	1628.857	1	925.4	65.4%	1	K.NNPDIPELHRPVVK.Q	2 2
	step06.19666.19666.2	4.4343	0.2757	1277.148	1276.5862	1	1907.5	85.0%	2	R.LVCLAAFILQK.C	2 2

Similarities: gi|17505907|ref|NP_07(2:0)

gi|51173724|ref|NP_00

4.3%

437

49601

8.1

bystin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.16795.16795.2	3.0412	0.213	1135.521	1135.3828	1	1623.8	93.8%	2	R.FYNLVLLPR.V	2
*	step06.18660.18660.2	2.5196	0.241	1165.525	1165.4106	1	775.9	88.9%	2	K.ALFKPGAWFK.G	2

U	gi\|209976986\|ref\|NP_0	2	2	4.3%	399	46030	8.5	PCI domain-containing protein 2 [Homo sapiens]
U	gi\|224451003\|ref\|NP_0	2	2	4.3%	399	46030	8.5	PCI domain-containing protein 2 [Homo sapiens]
U	gi\|224451001\|ref\|NP_0	2	2	4.3%	399	46030	8.5	PCI domain-containing protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.20532.20532.2	2.8198	0.2531	1203.414	1203.6052	1	1801.5	88.9%	1	R.MILIYLLPVK.M	2
	step04.8985.8985.2	2.2796	0.0926	876.338	877.14886	16	314.6	83.3%	1	K.KVYLLLK.T	2

U	gi\|116063573\|ref\|NP_0	8	15	4.2%	2639	280016	6.0	filamin-A isoform 1 [Homo sapiens]
U	gi\|160420317\|ref\|NP_0	8	15	4.2%	2647	280737	6.1	filamin-A isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18469.18469.2	2.5846	0.1093	1751.27	1751.9623	2	379.2	42.9%	1	R.TFSVWYVPEVTGTHK.V	2
step03.7906.7906.2	2.6243	0.3762	1156.953	1156.3507	1	654.8	72.7%	2	K.IVGPSGAAVPCK.V	2
step04.13025.13025.3	3.8157	0.3403	2450.009	2450.7703	1	976.4	32.3%	4	K.IVGPSGAAVPCKVEPGLGADNSVVR.F	3
step04.9657.9657.2	3.7443	0.4136	1430.461	1430.5508	1	1492.0	73.3%	4	K.AFGPGLQGGSAGSPAR.F	2
step02.11602.11602.2	2.2717	0.2116	1590.524	1589.7548	1	700.2	61.5%	1	R.YAPSEAGLHEMDIR.Y	2
step06.19135.19135.2	2.3511	0.1224	1597.391	1596.662	4	448.5	38.5%	1	K.FADQHVPGS#PFSVK.V	2
step04.13169.13169.2	2.2508	0.1623	1419.245	1418.6213	18	333.4	54.2%	1	R.RLTVSSLQESGLK.V	2
step05.13135.13135.2	2.5273	0.2631	1380.217	1380.5319	1	919.5	70.8%	1	K.YGGPYHIGGSPFK.A	2

gi|122937227|ref|NP_0

1029

118292

8.5

U2-associated protein SR140 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.6965.6965.2	2.2019	0.2491	1299.839	1299.3982	5	457.6	48.5%	1	K.T#FVRGGVVNAAK.E	2
*	step05.8700.8700.2	2.3469	0.2762	1176.53	1176.4137	7	306.9	55.0%	1	K.NPNAPMLPPPK.N	2
*	step05.16122.16122.2	2.7568	0.1868	950.366	950.16315	1	940.1	85.7%	3	R.NLLALIHR.M	2
*	step03.975.975.2	2.2636	0.0947	1635.626	1636.4805	11	453.3	36.4%	1	R.KRRHS#TS#PS#PSR.S	2

gi|41327779|ref|NP_06

600

68547

9.2

ATP-dependent RNA helicase DDX55 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.10692.10692.2	2.229	0.2706	1319.039	1319.4833	2	420.3	63.6%	1	R.KAEGLDLASCVR.S	2
*	step05.16818.16818.2	2.5893	0.3218	1617.603	1617.8328	1	372.2	54.2%	1	K.ADEKFNQLVHFLR.N	2
*	step06.18041.18041.2	3.3814	0.3806	1174.209	1174.3792	1	1179.6	93.8%	1	K.FNQLVHFLR.N	2

gi|22749325|ref|NP_68

618

67833

9.4

zinc finger protein 48 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17622.17622.2	2.4973	0.1179	1448.255	1447.6578	1	510.0	63.6%	1	R.FVLSCSLLSHQR.S	2
*	step05.16240.16240.2	3.1596	0.3849	1439.297	1439.6439	1	1465.7	69.2%	1	R.GHLVLTPFGIGDGR.A	2

gi|11545731|ref|NP_07

597

67639

5.8

gigaxonin [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.6935.6935.1	1.8065	0.1935	866.15	865.7588	5	156.9	55.6%	1	K.DDGS#TYK.I	1
*	step04.18010.18010.2	2.3864	0.1214	2187.037	2187.1782	24	231.8	22.1%	1	R.GYS#ECIVTVGGEERVS#RK.P	3 2

U	gi\|144226847\|ref\|NP_0	6	9	4.1%	1896	206945	5.6	obscurin-like protein 1 isoform 1 precursor [Homo sapiens]
U	gi\|291084534\|ref\|NP_0	6	9	5.0%	1543	168520	5.4	obscurin-like protein 1 isoform 2 precursor [Homo sapiens]
U	gi\|291084513\|ref\|NP_0	6	9	7.5%	1025	113273	5.7	obscurin-like protein 1 isoform 3 precursor [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.10650.10652.2	3.619	0.4646	1374.231	1374.5206	1	1351.1	86.4%	1	R.LPDSGVYVCHAR.N	2
step04.13036.13036.2	4.5281	0.4608	1553.515	1553.7454	1	977.7	67.9%	2	R.NSAGQTLSAVQLHVK.E	2
step05.13064.13064.2	3.0327	0.2335	1935.492	1936.1619	1	404.8	58.8%	1	R.NSAGQTLSAVQLHVKEPR.L	2
step05.16111.16111.3	4.0711	0.3698	2790.954	2791.127	1	633.0	35.0%	2	R.DGEELPVICQSSSGHMHALVLPGVTR.E	3
step06.19162.19162.3	4.0502	0.2965	2470.855	2470.8496	1	815.7	33.8%	1	K.NTVLLTWKPPEPAPETPFIYR.L	3
step05.17712.17712.2	3.6381	0.4596	2471.11	2470.8496	1	367.9	50.0%	2	K.NTVLLTWKPPEPAPETPFIYR.L	2

U	gi\|14670350\|ref\|NP_12	3	3	4.1%	998	112416	6.4	general transcription factor II-I isoform 1 [Homo sapiens]
U	gi\|254692934\|ref\|NP_0	3	3	4.2%	976	110035	7.4	general transcription factor II-I isoform 5 [Homo sapiens]
U	gi\|169881252\|ref\|NP_0	3	3	4.3%	957	107970	7.9	general transcription factor II-I isoform 4 [Homo sapiens]
U	gi\|14670354\|ref\|NP_12	3	3	4.2%	977	110106	7.4	general transcription factor II-I isoform 3 [Homo sapiens]
U	gi\|14670352\|ref\|NP_12	3	3	4.2%	978	110280	6.7	general transcription factor II-I isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step03.12910.12910.2	2.4304	0.0961	1639.268	1638.7899	2	430.4	45.5%	1	K.EDWNVRIT#KLRK.Q	2
step06.18005.18005.2	3.0249	0.3389	1730.244	1731.0927	1	859.4	66.7%	1	K.KPELVISYLPPGMASK.I	2
step05.15294.15294.2	2.281	0.1146	1381.711	1381.6678	1	502.0	62.5%	1	R.KFGEAIGMGFPVK.V	2

gi|9966805|ref|NP_065

859

96332

9.1

ATP-dependent RNA helicase DDX24 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.9958.9958.2	3.4679	0.3851	1195.67	1195.3967	1	382.6	75.0%	5	R.RPEIVVATPGR.L	2
*	step06.15474.15474.2	3.5562	0.5277	1377.597	1376.5911	1	1293.3	80.0%	2	K.VQHVIHYQVPR.T	2
*	step04.14395.14395.2	2.3588	0.1999	1530.092	1528.7343	1	381.1	62.5%	1	R.HLLSQPLFTESQK.T	2

gi|32189376|ref|NP_05

581

66146

7.9

activating signal cointegrator 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13066.13066.2	2.3357	0.2472	839.163	839.0607	1	1012.3	92.9%	2	R.LAVLLPGR.H	2
*	step05.16051.16051.2	4.1328	0.4189	1854.727	1855.0027	1	1159.3	66.7%	2	R.SSGFGLEFNSFQHQLR.I	2

gi|70887790|ref|NP_00

485

54911

8.4

DNA polymerase subunit gamma-2, mitochondrial precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.17652.17652.2	2.2932	0.0814	1735.525	1734.1631	19	234.1	42.3%	1	K.EMMHISKLKDFLIK.Y	2
*	step01.10215.10215.2	2.5761	0.0851	1526.113	1525.4531	2	467.8	42.0%	1	K.DFLIKY#IS#S#AK.N	2

gi|10863937|ref|NP_06

316

36204

8.0

BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.11572.11572.2	2.7218	0.1851	1101.21	1102.3544	1	1692.6	93.8%	1	K.PVVKLLYNR.S	2
*	step05.11479.11479.2	2.5208	0.0846	1705.336	1705.771	22	346.3	31.2%	1	K.PVVKLLY#NRS#NNK.Y	2

gi|124378039|ref|NP_0

4.0%

2357

251891

5.8

protein transport protein Sec16A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.12815.12815.2	2.2278	0.2851	1322.127	1322.4971	1	645.5	65.0%	1	R.IVNHWASPELR.Q	2
*	step05.12966.12966.2	2.8402	0.3504	1455.698	1455.6433	1	988.2	66.7%	2	K.SHLVGVKPFEADR.A	2
*	step05.12452.12452.2	2.4795	0.1313	1464.487	1463.4691	28	406.2	43.6%	1	R.GGIGAS#ENLENPPK.M	2
*	step04.13457.13457.3	6.5106	0.5696	3036.627	3036.219	1	1190.4	34.3%	2	R.TLENPVNVYNPSHSDSLASQQSVASHPR.Q	3
*	step05.15234.15234.2	3.5029	0.1822	1167.19	1167.385	1	1432.1	93.8%	1	R.FRELLLYGR.K	2
*	step05.13255.13255.2	3.2068	0.4172	1901.376	1902.1838	1	591.2	58.3%	2	R.LLPSAPQTLPDGPLASPAR.V	2

gi|11067747|ref|NP_00

4.0%

802

92251

8.2

cell division cycle 5-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16178.16178.3	3.5154	0.1214	2555.009	2554.6665	3	793.3	25.0%	2	R.KKESDLPSAILQTSGVS#EFT#KK.R	3
*	step05.15462.15462.2	3.644	0.3386	979.198	979.2412	1	1084.9	94.4%	2	R.LGLLGLPAPK.N	2

gi|20127553|ref|NP_05

4.0%

755

85077

6.9

anaphase-promoting complex subunit 5 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19572.19572.2	4.0035	0.5042	1977.832	1977.377	1	707.2	55.9%	3	R.LNQLLLPLLQGPDITLSK.L	2
	step05.14286.14286.2	2.2622	0.4537	1374.268	1373.579	2	319.8	68.2%	1	R.YAALNLAALHCR.F	2

U	gi\|240849353\|ref\|NP_0	2	3	4.0%	555	64292	6.7	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform e [Homo sapiens]
U	gi\|31083259\|ref\|NP_00	2	3	4.2%	524	61061	6.9	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform a [Homo sapiens]
U	gi\|31083243\|ref\|NP_84	2	3	4.9%	449	52625	7.2	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform c [Homo sapiens]
U	gi\|31083236\|ref\|NP_84	2	3	4.5%	485	56661	7.2	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform b [Homo sapiens]
U	gi\|240849359\|ref\|NP_0	2	3	4.1%	540	62755	8.7	serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform f [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.20077.20079.2	2.6045	0.2875	1349.693	1350.6969	2	537.0	70.0%	2	K.ILPIMFPSLYR.N	2
	step06.17926.17926.2	2.3739	0.3879	1243.516	1243.4797	1	507.1	75.0%	1	K.TIHGLIYNALK.L	2

gi|4505941|ref|NP_000

3.9%

1174

133896

6.9

DNA-directed RNA polymerase II subunit RPB2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14628.14628.2	4.3155	0.4526	1834.879	1835.0546	1	1489.3	76.9%	1	K.FEQIYLSKPTHWER.D	2
*	step06.18204.18204.3	4.597	0.5102	2248.555	2247.6453	1	859.1	31.9%	2	R.MDTLAHVLYYPQKPLVTTR.S	3
*	step03.13384.13384.2	3.7699	0.3804	1487.28	1487.6389	1	1807.1	87.5%	2	R.DCQIAHGAAQFLR.E	2

gi|7661920|ref|NP_055

3.9%

411

46871

6.7

eukaryotic initiation factor 4A-III [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13851.13851.3	3.7806	0.4601	1828.66	1829.0483	1	1273.0	46.7%	1	R.GIYAYGFEKPSAIQQR.A	3 3 3
	step04.13774.13774.2	4.4353	0.4194	1829.503	1829.0483	1	1328.6	76.7%	4	R.GIYAYGFEKPSAIQQR.A	2 2 2

Similarities: gi|4503529|ref|NP_001(2:0)
gi|83700235|ref|NP_00(2:0)

gi|18644728|ref|NP_07

3.8%

1146

127593

7.6

nucleolar protein 6 alpha isoform [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13219.13221.2	4.3963	0.629	1668.008	1667.885	1	1608.2	80.8%	1	R.LAELLTQQHGLQCR.A	2
*	step05.15475.15475.2	2.3678	0.0993	1695.57	1696.0515	3	430.2	53.6%	1	R.AQLPVMVIVTPQDRK.N	2
*	step06.20379.20379.2	3.8245	0.3808	1818.761	1818.1517	1	826.7	60.7%	4	R.TVFRPPLDIYDVLIR.L	2

gi|29029559|ref|NP_00

3.8%

971

110417

5.8

exportin-2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15222.15222.2	4.1366	0.2514	1589.638	1589.7794	1	1411.8	73.1%	1	R.FQSGDFHVINGVLR.T	2
*	step03.1090.1090.2	2.802	0.393	2586.386	2585.9148	1	545.4	36.4%	1	K.FFEGPVTGIFSGYVNSMLQEYAK.N	2

U	gi\|195539337\|ref\|NP_0	2	3	3.8%	610	66593	7.4	putative adenosylhomocysteinase 3 isoform b [Homo sapiens]
U	gi\|298286489\|ref\|NP_0	2	3	4.5%	508	56697	8.1	putative adenosylhomocysteinase 3 isoform c [Homo sapiens]
U	gi\|24308043\|ref\|NP_05	2	3	3.8%	611	66721	7.4	putative adenosylhomocysteinase 3 isoform a [Homo sapiens]
U	gi\|195539349\|ref\|NP_0	2	3	4.5%	508	56944	7.1	putative adenosylhomocysteinase 3 isoform d [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13188.13188.2	3.2269	0.3649	1537.464	1537.7045	1	735.0	66.7%	1	R.SQVDHVIWPDGKR.I	2 2
	step03.13234.13234.2	2.7823	0.338	1267.403	1267.498	1	1079.4	83.3%	2	R.YKQDVYLLPK.K	2 2

Similarities: gi|21361647|ref|NP_00(2:0)

gi|4504733|ref|NP_003

3.7%

1257

133767

8.4

insulin receptor substrate 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.14969.14969.2	3.0258	0.2035	1239.64	1240.4791	1	1017.1	83.3%	1	K.DVWQVIVKPR.G	2
*	step04.10311.10311.2	2.9685	0.4833	1327.316	1327.4705	1	426.4	63.6%	4	R.FVTPSEPVAHSR.R	2
*	step06.17566.17566.2	3.198	0.1733	1237.456	1237.4353	1	619.1	80.0%	2	R.RAVSVPASFFR.R	2
*	step06.19990.19990.2	4.2461	0.3152	1589.395	1588.7467	1	804.3	70.8%	3	K.SWSSYFSLPNPFR.S	2

U	gi\|225007648\|ref\|NP_0	3	7	3.7%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]
U	gi\|225007652\|ref\|NP_0	3	7	3.7%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]
U	gi\|225007650\|ref\|NP_0	3	7	3.7%	1024	114709	9.2	ribonucleases P/MRP protein subunit POP1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18898.18898.2	4.2048	0.4952	1592.67	1592.9045	1	1072.8	67.9%	3	R.LIGPLSHSILTEAIK.A	2
step06.17711.17711.2	3.5183	0.5643	1219.506	1220.5292	1	2049.1	90.0%	2	K.IPILLIQQPGK.V	2
step05.16100.16100.2	2.7908	0.4801	1399.899	1400.6012	1	768.8	68.2%	2	R.EACLSILGHFPR.A	2

gi|48762926|ref|NP_00

3.7%

919

102452

6.1

periodic tryptophan protein 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18060.18060.2	3.5486	0.3117	2284.659	2285.642	1	974.3	47.5%	1	R.LLDVLSGHEGPISGLCFNPMK.S	2
*	step05.17101.17101.3	4.297	0.4131	2301.373	2301.6414	1	1121.7	33.8%	1	R.LLDVLSGHEGPISGLCFNPM*K.S	3
*	step05.19326.19326.2	3.518	0.4803	1429.393	1428.7441	1	643.0	75.0%	5	R.AGTLLPVIQFLQK.S	2

U	gi\|45643123\|ref\|NP_00	2	3	3.7%	856	95051	6.5	nuclear valosin-containing protein-like isoform 1 [Homo sapiens]
U	gi\|45643125\|ref\|NP_99	2	3	4.3%	750	82746	6.4	nuclear valosin-containing protein-like isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.15196.15196.2	2.6124	0.4063	1192.225	1192.3862	1	1341.2	77.3%	1	R.GVLLHGPPGCGK.T	2
	step06.18777.18777.2	5.2484	0.4885	1849.716	1849.2007	1	1740.1	65.8%	2	K.ALGLVTPAGVLLAGPPGCGK.T	2

gi|23510356|ref|NP_11

3.7%

568

65583

6.2

serine/threonine-protein kinase RIO1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13698.13698.2	2.6396	0.3464	1079.59	1079.2745	1	856.4	81.2%	2	K.TSILVFKDR.D	2
	step02.5874.5874.2	3.6724	0.4548	1397.474	1397.559	1	1755.2	86.4%	2	K.VPALLENQVEER.T	2

U	gi\|164419743\|ref\|NP_0	2	4	3.6%	882	98666	10.0	ATP-dependent RNA helicase DDX54 isoform 1 [Homo sapiens]
U	gi\|51094101\|ref\|NP_07	2	4	3.6%	881	98595	10.0	ATP-dependent RNA helicase DDX54 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16118.16118.2	3.4489	0.3134	1712.793	1712.8877	1	812.3	69.2%	2	K.HHAEYLTELLTTQR.V	2
	step06.18751.18751.2	4.7992	0.5452	1987.362	1987.3123	1	1458.0	76.5%	2	R.AKEM*DLVGLGLHPLFSSR.F	2

gi|42544243|ref|NP_05

863

97095

8.3

dynamin-3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18717.18717.2	2.6429	0.1187	1937.914	1936.8403	4	313.8	26.5%	1	R.IEGSGDQVDT#LELS#GGAK.I	2
*	step02.14109.14109.2	2.7037	0.2159	1429.705	1429.4543	13	589.9	41.7%	2	R.AGVY#PDKSVGNNK.A	2

gi|122937229|ref|NP_0

869

96620

7.9

zinc finger protein 629 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13603.13603.2	3.6117	0.0837	2282.16	2282.383	1	650.2	37.3%	3	R.HQRIHTGEKPYKCS#DCGK.S	2
*	step04.12970.12970.2	3.0312	0.4172	1476.396	1476.6194	1	838.5	70.8%	1	K.SFSQSSNLITHVR.T	2

gi|157266328|ref|NP_0

777

86648

8.7

BRCA1-associated RING domain protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14440.14440.2	2.274	0.2286	1340.559	1339.5347	121	270.5	45.0%	1	R.QLDSM*IQLCSK.L	2
*	step03.1772.1772.2	2.6746	0.1313	2091.634	2092.8552	48	312.5	25.0%	1	K.NES#S#SASHCSVMNT#GQR.R	2

gi|40217805|ref|NP_07

702

79277

9.2

nucleolar protein 9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16493.16493.2	2.5188	0.3926	1283.592	1283.5039	1	659.8	80.0%	2	R.LLSPSHVVQFR.S	2
*	step05.15704.15704.2	3.6378	0.1698	1678.422	1677.968	1	909.5	61.5%	2	R.LYHILTPVPPEELR.T	2

gi|154759257|ref|NP_7

666

72457

8.2

ATP-dependent RNA helicase DDX51 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22739.22739.2	3.4628	0.4533	1627.736	1627.9952	1	962.9	75.0%	3	K.TLAFVIPVVQALLSR.V	2
*	step05.11407.11407.2	2.3202	0.184	1002.098	1002.1518	3	512.6	68.8%	1	R.LFSTGLAHR.G	2

U	gi\|161169023\|ref\|NP_0	3	4	3.5%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]
U	gi\|20149524\|ref\|NP_00	3	4	3.5%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]
U	gi\|195546902\|ref\|NP_0	3	4	3.5%	1083	120499	5.1	transcription elongation factor SPT5 isoform b [Homo sapiens]
U	gi\|195546900\|ref\|NP_0	3	4	3.5%	1087	121000	5.1	transcription elongation factor SPT5 isoform a [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.16364.16364.2	5.0128	0.4777	1813.819	1814.1167	1	2491.5	82.1%	1	R.KFIAYQFTDTPLQIK.S	2
step05.13788.13788.2	2.4418	0.3095	1009.562	1010.1641	1	899.6	78.6%	2	R.SFAFLHCK.K	2
step05.8644.8644.2	2.2635	0.2363	1445.354	1444.301	78	133.7	35.7%	1	R.GGFGS#PGGGSGGM*S#R.G	2

U	gi\|190358532\|ref\|NP_0	2	2	3.5%	1028	117602	5.6	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform a [Homo sapiens]
U	gi\|190358536\|ref\|NP_0	2	2	3.5%	1028	117602	5.6	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform a [Homo sapiens]
U	gi\|190358534\|ref\|NP_0	2	2	3.5%	1026	117402	5.6	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.20171.20171.2	2.2931	0.1437	1954.059	1953.2294	4	176.6	43.3%	1	K.ITELRPFNSWEALFTK.M	2
	step03.916.916.2	2.2324	0.1201	2542.462	2542.6604	26	253.2	18.9%	1	K.LIS#QGT#IEES#MLKINQQKLK.L	2

gi|84000432|ref|NP_65

3.5%

838

93969

6.4

hypothetical protein LOC157769 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17489.17489.2	4.1086	0.4388	1976.324	1976.3513	1	829.7	56.7%	2	R.DHLMLYPYHLSDIMVK.G	2
*	step05.16880.16880.2	2.5162	0.2855	1394.707	1393.6135	1	395.4	62.5%	1	R.SPSSLLIANLHLQ.-	2

gi|38016914|ref|NP_05

3.5%

626

72201

7.1

SAM domain and HD domain-containing protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.15840.15840.2	3.5691	0.4662	1357.075	1356.5518	1	1034.6	75.0%	1	K.SFLYEIVSNKR.N	2
*	step03.12921.12921.2	3.2028	0.483	1380.413	1380.5236	1	938.9	75.0%	2	K.NPIDHVSFYCK.T	2

gi|7427519|ref|NP_005

3.4%

821

92889

5.4

DNA replication licensing factor MCM6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20753.20753.2	3.2402	0.4317	1231.297	1231.5754	1	794.9	81.8%	2	R.GVLLMLFGGVPK.T	2
*	step05.18646.18646.2	3.1248	0.3835	1247.511	1247.575	1	806.6	81.8%	1	R.GVLLM*LFGGVPK.T	2
*	step03.14112.14112.2	3.7932	0.4894	1686.45	1686.8502	1	1104.2	60.0%	1	R.TSILAAANPISGHYDR.S	2

gi|223468695|ref|NP_6

3.4%

529

61238

8.0

zinc finger protein 572 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21906.21906.2	2.3051	0.1083	2225.484	2226.4248	1	624.4	44.1%	1	K.HQRIHTGEKPYQCPECGK.N	2
*	step06.15660.15660.2	2.4574	0.2493	2305.353	2306.4048	1	232.5	33.3%	1	K.HQRIHTGEKPY#QCPECGK.N	2

U	gi\|239787838\|ref\|NP_0	2	6	3.3%	929	105674	9.4	testis-expressed sequence 10 protein isoform 1 [Homo sapiens]
U	gi\|239787844\|ref\|NP_0	2	6	3.4%	913	103915	9.4	testis-expressed sequence 10 protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.20471.20471.2	3.2187	0.4393	1412.79	1412.7446	1	762.5	75.0%	2	R.LAAVQLLQFLAPK.I	2
	step06.21795.21795.2	4.5598	0.5109	2045.389	2045.4529	1	875.2	61.8%	4	R.LVQLVYFLPSLPADLLSR.L	2

gi|11559929|ref|NP_05

874

97718

5.5

coatomer subunit gamma [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.13874.13874.2	2.3317	0.379	1205.142	1205.4315	3	536.4	60.0%	1	R.ILHLLGQEGPK.T	2
*	step06.24723.24723.2	2.9221	0.3899	2249.589	2248.1997	4	216.6	23.8%	1	R.ALQQY#T#LEPS#EKPFDLK.S	2

U	gi\|304361757\|ref\|NP_0	2	3	3.2%	899	96161	6.1	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform b [Homo sapiens]
U	gi\|68131557\|ref\|NP_05	2	3	2.8%	1053	112966	6.3	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform a [Homo sapiens]
U	gi\|304361760\|ref\|NP_0	2	3	3.2%	899	96161	6.1	serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.10619.10619.2	2.4342	0.4746	1114.926	1115.2587	1	672.6	77.8%	1	K.NTALHLACSK.G	2 2
	step06.18018.18018.2	5.7841	0.5377	1989.939	1989.268	1	1354.9	66.7%	2	R.NLINATNAALQTPLHVAAR.N	2

Similarities: gi|157743284|ref|NP_7(1:1)

gi|40538772|ref|NP_61

845

94501

5.2

putative protein arginine N-methyltransferase 10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20880.20880.2	2.2232	0.1591	1416.743	1416.4573	1	780.7	57.6%	1	R.DEAAGY#FHKAVK.L	2
*	step05.15208.15208.2	2.5037	0.0986	1769.838	1769.9904	44	356.7	38.1%	1	R.VFLDLSSLPCIPLS#K.P	2

U	gi\|284055276\|ref\|NP_0	2	2	3.2%	803	89231	8.4	exonuclease 1 isoform a [Homo sapiens]
U	gi\|284172361\|ref\|NP_5	2	2	3.1%	846	94103	8.3	exonuclease 1 isoform b [Homo sapiens]
U	gi\|284055278\|ref\|NP_0	2	2	3.1%	846	94103	8.3	exonuclease 1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.16990.16990.2	2.3972	0.1262	1718.859	1718.6387	1	424.6	37.5%	1	K.NEESGAVVVPGT#RS#R.F	2
	step03.13364.13364.2	2.321	0.1141	1325.082	1324.0565	11	481.3	36.0%	1	K.SSSADS#LS#T#TK.I	2

gi|118601081|ref|NP_0

747

85105

4.9

heterogeneous nuclear ribonucleoprotein U-like protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14919.14919.2	2.8376	0.3569	1035.706	1035.1803	1	1222.2	93.8%	2	K.FPTLWSGAR.S	2
*	step03.13199.13199.2	3.7923	0.3364	1734.168	1733.9418	1	994.6	71.4%	1	K.SRDLLVQQASQCLSK.L	2

gi|21359972|ref|NP_11

684

77163

5.6

kelch repeat and BTB domain-containing protein 7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13984.13984.2	3.002	0.2447	1419.004	1418.658	1	848.7	77.3%	3	R.RLDLTNCTAILK.F	2 2
	step06.18144.18144.2	2.6811	0.2114	1233.595	1233.4669	1	648.4	83.3%	1	K.EMVIFFGHPR.D	2 2

Similarities: gi|45333883|ref|NP_69(2:0)

U	gi\|143771699\|ref\|NP_0	2	3	3.2%	562	63665	7.0	zinc finger protein 460 [Homo sapiens]
U	gi\|190610002\|ref\|NP_9	2	3	3.0%	600	68404	7.9	zinc finger protein 543 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13471.13471.2	2.419	0.3496	2178.953	2179.3616	3	353.9	44.1%	1	R.HFSIHTGEKPYECVECGK.A	2 2
	step04.13655.13655.3	4.6107	0.4063	2179.788	2179.3616	1	935.3	41.2%	2	R.HFSIHTGEKPYECVECGK.A	3 3

Similarities: gi|4585643|ref|NP_003(2:0)

gi|194394141|ref|NP_0

2271

254386

6.5

nucleolar pre-ribosomal-associated protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16086.16086.2	4.9428	0.5816	1655.526	1655.7947	1	1400.7	75.0%	2	K.HGINFYDASLGTFGR.G	2
*	step03.1565.1565.2	2.9357	0.1128	1785.766	1786.0168	1	895.9	50.0%	1	K.TAADDDLVADLVVNILK.V	2
*	step02.18405.18405.2	3.1121	0.2858	2320.778	2319.6829	4	256.4	32.5%	1	R.EVTLALLSLPETHLVTQQPTK.S	2
*	step05.16460.16460.2	3.2379	0.1017	1992.527	1992.2703	1	543.5	53.1%	2	K.DIWLGAQRPDTLLTHVR.M	2

gi|156616275|ref|NP_0

1107

123631

7.0

DNA polymerase delta catalytic subunit [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22141.22141.2	3.0844	0.428	1537.989	1537.829	1	856.8	65.4%	1	K.GLLPQILENLLSAR.K	2
*	step01.10336.10336.2	2.6555	0.1606	1211.277	1210.3396	7	498.1	55.6%	1	R.IDISQLVIT#K.E	2
*	step04.14232.14232.2	2.3056	0.398	1114.452	1114.2374	1	677.1	72.2%	1	R.RFGPPGPEAW.-	2

gi|41327749|ref|NP_03

808

92116

5.5

anaphase-promoting complex subunit 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.9018.9018.1	1.8723	0.1211	668.717	668.8477	1	251.8	80.0%	1	K.LPTLPK.N	1 1
*	step03.15027.15027.3	4.1317	0.3286	2229.576	2229.58	1	1354.4	36.1%	1	R.RMENIIDQCLQKPADVIGK.S	3

Similarities: gi|199559779|ref|NP_1(1:1)

gi|224177533|ref|NP_0

577

66762

9.3

zinc finger protein 880 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.15651.15651.2	3.8322	0.1464	2265.213	2266.4922	1	873.3	55.9%	1	Q.HQRIHTGEKPYKCHECGK.L	2
*	step05.13211.13211.2	3.3553	0.2671	2345.185	2346.4722	1	675.6	37.3%	4	Q.HQRIHTGEKPY#KCHECGK.L	2

U	gi\|29171753\|ref\|NP_80	2	2	3.0%	1185	133970	6.3	liprin-alpha-1 isoform a [Homo sapiens]
U	gi\|4505983\|ref\|NP_003	2	2	3.0%	1202	135778	6.3	liprin-alpha-1 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.12993.12993.2	2.2122	0.258	1947.955	1946.7731	6	314.8	28.6%	1	R.LS#DT#VDKLLS#ESNER.L	2
	step03.20084.20084.2	2.303	0.1057	2510.604	2509.5903	14	90.0	22.0%	1	K.LRLAIQEIMSLT#SPSAPPT#S#R.T	2

gi|7661950|ref|NP_055

1173

133502

6.8

RNA polymerase-associated protein CTR9 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13902.13902.2	3.5612	0.389	1473.46	1473.7253	1	1345.3	86.4%	2	K.IIMYDQNHLLGR.A	2
*	step03.12864.12864.2	3.3804	0.4625	1488.971	1489.7247	1	1101.4	81.8%	1	K.IIM*YDQNHLLGR.A	2
*	step05.18374.18374.3	4.0401	0.3614	2584.207	2584.8713	39	621.2	27.3%	1	K.EALQINQDHPDAWSLIGNLHLAK.Q	3

gi|256574805|ref|NP_0

1188

124034

9.4

hypothetical protein LOC647024 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11874.11874.2	2.2501	0.0939	1672.719	1671.7748	7	373.4	35.4%	1	-.MKKKQTVQGT#FS#K.L	2
*	step06.16714.16714.3	3.7516	0.2182	2842.933	2842.9175	8	453.3	19.5%	1	K.APS#RLPLPPSFHIRPAS#QVY#PDR.A	3

gi|82880656|ref|NP_65

955

112749

6.7

coiled-coil domain-containing protein 46 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19733.19733.2	2.9406	0.1787	2583.106	2582.7874	1	261.1	26.3%	1	K.RQVELNS#EKVYAEMKEQMEK.V	2
	step04.16599.16599.2	2.4947	0.1657	1200.614	1200.2666	17	475.0	50.0%	2	K.S#QVNFLQKR.A	2

U	gi\|13435361\|ref\|NP_07	2	2	3.0%	894	99987	5.4	desmocollin-1 isoform Dsc1a preproprotein [Homo sapiens]
U	gi\|4826702\|ref\|NP_004	2	2	3.2%	840	93835	5.5	desmocollin-1 isoform Dsc1b preproprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.11259.11259.2	2.2272	0.1449	1481.283	1480.5859	1	739.2	57.6%	1	R.EQQEIKVVLS#AR.E	2
	step02.16439.16439.2	3.6157	0.1401	1819.653	1818.9269	2	1281.4	54.8%	1	R.MKVQDQDLPNT#PHSK.A	2

gi|29294647|ref|NP_07

860

97360

9.1

protein argonaute-3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.5214.5214.1	1.9302	0.1281	1236.664	1235.3027	49	217.0	55.6%	1	R.T#LPEPLELDK.P	1
	step04.16393.16393.2	4.2478	0.5606	1871.39	1871.1233	1	1121.8	76.7%	2	K.HTYLPLEVCNIVAGQR.C	2

U	gi\|163937854\|ref\|NP_0	2	2	3.0%	861	91514	9.8	ataxin-7-like protein 1 isoform 1 [Homo sapiens]
U	gi\|211971080\|ref\|NP_6	2	2	3.5%	738	77874	10.0	ataxin-7-like protein 1 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.6423.6424.2	2.3835	0.1224	880.057	880.02655	18	311.9	71.4%	1	R.PPNSVLPR.P	2
	step01.5228.5228.2	3.0607	0.1634	2204.716	2206.0366	137	155.0	28.2%	1	K.S#SKVKDLS#T#RSDESPSNK.K	2

gi|38569394|ref|NP_00

2.9%

1332

150254

5.9

elongator complex protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12990.12990.2	2.2695	0.1711	857.253	857.09955	1	619.9	91.7%	1	K.LVLQMPR.G	2
*	step06.17542.17542.2	2.8574	0.3036	1321.46	1321.5406	1	1036.1	75.0%	1	K.YCLSILTSHVK.K	2
*	step04.15856.15856.3	4.8059	0.3491	2345.383	2345.6804	1	1954.7	43.4%	3	K.YNRLDIIETNVKPSILEAQK.N	3

gi|115511046|ref|NP_0

2.9%

1325

148088

8.2

zinc finger MYM-type protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.15299.15299.2	2.3777	0.0873	2541.179	2540.6033	8	182.9	21.7%	1	K.PKGT#NSSAVPLSQGQVVVS#PPSSR.S	2
*	step02.1305.1305.2	2.2291	0.1051	1664.529	1665.7241	1	332.3	35.9%	1	K.NDAELDSPPS#KKKR.L	2

U	gi\|148536853\|ref\|NP_0	2	2	2.9%	1224	138345	7.7	coatomer subunit alpha isoform 2 [Homo sapiens]
U	gi\|148536855\|ref\|NP_0	2	2	2.9%	1233	139324	7.6	coatomer subunit alpha isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17884.17884.3	3.7829	0.4735	2255.259	2255.541	1	881.0	35.0%	1	R.GVNWAAFHPTMPLIVSGADDR.Q	3
	step05.15672.15672.2	3.9135	0.3324	1714.698	1714.9883	1	1305.2	71.4%	1	R.LLHDQVGVIQFGPYK.Q	2

U	gi\|301601658\|ref\|NP_0	2	3	2.9%	931	103642	8.7	double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens]
U	gi\|70167113\|ref\|NP_00	2	3	2.9%	931	103642	8.7	double-stranded RNA-specific adenosine deaminase isoform d [Homo sapiens]
U	gi\|70167032\|ref\|NP_05	2	3	2.3%	1181	131070	8.6	double-stranded RNA-specific adenosine deaminase isoform c [Homo sapiens]
U	gi\|70166944\|ref\|NP_05	2	3	2.2%	1200	133175	8.5	double-stranded RNA-specific adenosine deaminase isoform b [Homo sapiens]
U	gi\|70166852\|ref\|NP_00	2	3	2.2%	1226	135967	8.6	double-stranded RNA-specific adenosine deaminase isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.16126.16126.2	3.8206	0.5036	1736.33	1737.0393	1	1062.4	75.0%	1	R.AIMEMPSFYSHGLPR.C	2
	step04.16458.16458.2	3.0121	0.2995	1416.476	1416.6624	1	681.0	63.6%	2	K.SPVTTLLECMHK.L	2

U	gi\|18450369\|ref\|NP_54	2	2	2.9%	793	89703	6.6	receptor-type tyrosine-protein phosphatase alpha isoform 2 precursor [Homo sapiens]
U	gi\|4506303\|ref\|NP_002	2	2	2.9%	802	90719	6.7	receptor-type tyrosine-protein phosphatase alpha isoform 1 precursor [Homo sapiens]
U	gi\|18450371\|ref\|NP_54	2	2	2.9%	793	89703	6.6	receptor-type tyrosine-protein phosphatase alpha isoform 2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.13262.13262.2	2.2798	0.126	1318.751	1319.2745	22	461.9	45.0%	1	R.LINSS#T#AEPVK.E	2
	step02.6791.6791.2	2.6359	0.241	1448.087	1447.7294	1	587.7	59.1%	1	K.LTSIKIQNDKMR.T	2

U	gi\|16418413\|ref\|NP_44	2	2	2.9%	791	86988	8.2	solute carrier family 26 member 9 isoform a [Homo sapiens]
U	gi\|217272867\|ref\|NP_5	2	2	2.6%	887	97288	8.5	solute carrier family 26 member 9 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.20092.20092.2	2.7042	0.0917	1600.738	1600.7219	50	336.2	48.5%	1	-.M*SQPRPRY#VVDR.A	2
	step05.12214.12214.2	2.624	0.3727	1282.646	1282.4678	3	309.6	55.0%	1	R.NAFRCSSAKIK.A	2

gi|145580580|ref|NP_6

2.9%

475

52897

6.1

ubiquilin-like protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.1991.1991.2	2.6179	0.1227	1547.487	1547.6012	2	349.0	48.7%	1	R.M*SQSGCPS#GLLADK.N	2
*	step02.1420.1420.2	2.9153	0.1082	1548.417	1547.6012	10	302.0	41.0%	1	R.M*S#QSGCPSGLLADK.N	2

gi|53829374|ref|NP_00

1192

131868

8.9

plakophilin-4 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.1641.1641.2	2.2569	0.0907	1806.619	1805.6014	34	199.1	26.7%	1	R.LGAES#PSIAST#SS#TEK.S	2
*	step05.16945.16945.2	2.4407	0.3286	2143.033	2143.0676	20	210.1	26.6%	1	R.T#QPPM*QYYNS#QGDATHK.G	2

gi|167234419|ref|NP_0

955

108666

10.2

thyroid hormone receptor-associated protein 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13865.13865.2	2.9659	0.3417	1489.516	1489.6997	1	860.1	65.4%	2	K.SGKWEGLVYAPPGK.E	2
*	step05.12854.12854.2	4.0676	0.4211	1531.501	1530.6703	1	1447.5	79.2%	2	R.SIFQHIQSAQSQR.S	2

gi|18860916|ref|NP_03

950

108583

7.5

5'-3' exoribonuclease 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16834.16834.2	2.6685	0.3274	988.035	988.2114	2	671.0	78.6%	3	R.LFSIVRPR.R	2
*	step06.17441.17441.2	3.8471	0.4506	1965.933	1966.1865	1	965.2	61.1%	2	R.DQPAFTPSGILTPHALGSR.N	2

gi|125346192|ref|NP_9

636

74571

8.5

zinc finger protein 790 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16329.16329.3	3.6885	0.239	2344.695	2343.5317	16	637.9	33.8%	2	R.HQRIHTGEKPYECNECRK.A	3
*	step05.13508.13508.2	3.8607	0.3252	2344.888	2343.5317	1	581.2	44.1%	3	R.HQRIHTGEKPYECNECRK.A	2

gi|262290932|ref|NP_0

503

57526

9.1

cytochrome P450 3A7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14477.14477.2	2.3955	0.1129	1699.841	1699.9961	45	204.7	30.8%	1	R.KVIS#FLTKSVKQIK.E	2
*	step03.9938.9938.2	2.8598	0.1358	1779.745	1779.9761	97	165.9	40.4%	1	R.KVISFLT#KS#VKQIK.E	2

U	gi\|310114661\|ref\|XP_0	1	60	2.8%	358	41049	4.9	PREDICTED: protein SET-like [Homo sapiens]
U	gi\|310127914\|ref\|XP_0	1	60	2.8%	358	41049	4.9	PREDICTED: protein SET-like [Homo sapiens]
U	gi\|310119431\|ref\|XP_0	1	60	2.6%	385	43809	4.7	PREDICTED: protein SET-like [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.12356.12356.2	3.8018	0.4112	1210.167	1209.3274	1	1064.6	88.9%	60	R.VEVTEFEDIK.S	2 2 2

Similarities: gi|170763500|ref|NP_0(1:0)
gi|170763498|ref|NP_0(1:0)

gi|10863903|ref|NP_00

1992

220432

8.5

probable E3 ubiquitin-protein ligase TRIP12 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23695.23695.2	2.2627	0.1342	1868.749	1868.6606	46	195.0	22.9%	1	R.ST#RQKTT#GSCAST#SR.R	2
*	step04.15964.15964.2	2.2888	0.0897	1949.06	1947.8757	1	270.5	25.3%	1	R.MSQLFHRT#IGSGAS#S#K.A	2
*	step03.19822.19822.3	3.7085	0.0925	2948.777	2948.9114	88	499.2	20.9%	1	K.TFES#T#ENPDDFLPSVMT#CVNYLK.L	3

gi|197333811|ref|NP_0

1524

170543

7.3

unhealthy ribosome biogenesis protein 2 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19314.19314.2	4.356	0.3602	1910.755	1911.2306	1	1405.1	68.8%	2	R.AFGDVTAHLLQPCLVLR.H	2
*	step06.17952.17952.2	3.1618	0.2914	1185.344	1184.4489	1	1365.2	83.3%	2	R.LCHVLGPFLK.E	2
*	step05.17527.17527.2	3.1831	0.4714	1570.202	1570.8524	1	1118.9	73.1%	1	R.ACPQIVTALTLLNR.E	2

gi|269847874|ref|NP_0

1430

160248

8.4

probable ATP-dependent RNA helicase YTHDC2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.19912.19912.2	2.3659	0.3341	1702.863	1703.0758	1	335.3	53.6%	1	K.LLAPVNCPIADFLMK.A	2
*	step03.11817.11817.2	2.246	0.2265	1160.279	1160.3907	1	571.2	75.0%	1	K.APEPPPALIVR.N	2
*	step05.12726.12726.2	3.3445	0.4305	1501.969	1502.6985	1	851.5	79.2%	1	R.FHPASVLSQPQYK.K	2

U	gi\|119395740\|ref\|NP_0	2	2	2.7%	1091	122053	6.8	integrin alpha-6 isoform a precursor [Homo sapiens]
U	gi\|119395742\|ref\|NP_0	2	2	2.7%	1073	119476	6.8	integrin alpha-6 isoform b precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10882.10882.2	2.2478	0.1188	1817.281	1815.8838	13	207.5	34.6%	1	K.TIT#VT#PNRIDLRQK.T	2
	step06.19285.19285.2	2.3068	0.0827	1972.844	1972.897	22	283.9	28.6%	1	K.LIATFPDTLT#Y#S#AYR.E	3 2

gi|221316723|ref|NP_0

1025

115704

8.3

N-acetyltransferase 10 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.16921.16921.2	2.6651	0.2461	1281.451	1280.4935	1	704.6	66.7%	1	K.ARPSVLWCYK.K	2
	step05.14395.14395.2	2.6908	0.2227	1037.536	1037.3207	1	1093.3	93.8%	2	R.KDLPPLLLK.L	2 2
	step03.14730.14730.2	2.7466	0.3284	1022.387	1022.2246	3	537.7	87.5%	2	R.AGFVPVYLR.Q	2 2

Similarities: gi|221316741|ref|NP_0(2:1)

U	gi\|282165706\|ref\|NP_0	2	2	2.7%	993	111663	7.5	tight junction protein ZO-2 isoform 6 [Homo sapiens]
U	gi\|42518070\|ref\|NP_00	2	2	2.3%	1190	133958	7.4	tight junction protein ZO-2 isoform 1 [Homo sapiens]
U	gi\|42518065\|ref\|NP_96	2	2	2.6%	1043	117758	7.0	tight junction protein ZO-2 isoform 2 [Homo sapiens]
U	gi\|282165810\|ref\|NP_0	2	2	2.2%	1221	137342	8.0	tight junction protein ZO-2 isoform 3 [Homo sapiens]
U	gi\|282165804\|ref\|NP_0	2	2	2.3%	1157	130446	7.6	tight junction protein ZO-2 isoform 4 [Homo sapiens]
U	gi\|282165800\|ref\|NP_0	2	2	2.6%	1020	115168	6.7	tight junction protein ZO-2 isoform 5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.20448.20448.2	2.2813	0.148	1996.832	1996.8036	1	402.0	31.4%	1	R.SREHPHS#RS#PS#PEPR.G	2
	step01.6236.6236.2	2.4545	0.2357	1427.057	1425.679	7	289.0	45.5%	1	R.LGSQIFVKEM*TR.T	2

U	gi\|209869993\|ref\|NP_0	2	4	2.7%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]
U	gi\|4503915\|ref\|NP_000	2	4	2.7%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]
U	gi\|209869995\|ref\|NP_0	2	4	2.7%	1010	107767	6.7	trifunctional purine biosynthetic protein adenosine-3 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.18227.18227.2	3.0851	0.2833	1299.599	1298.5585	1	788.4	80.0%	2	R.IYSHSLLPVLR.S	2
	step05.16038.16038.2	4.365	0.4357	1666.703	1666.9053	1	1828.2	80.0%	2	K.AFAHITGGGLLENIPR.V	2

gi|222136639|ref|NP_0

935

101531

7.3

C-1-tetrahydrofolate synthase, cytoplasmic [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20415.20415.2	3.8358	0.3921	1493.315	1492.8533	1	678.5	80.8%	2	R.MFGIPVVVAVNAFK.T	2
*	step04.16677.16677.2	2.8754	0.3027	1169.976	1170.4287	1	567.2	80.0%	2	K.GVPTGFILPIR.D	2

gi|170932494|ref|NP_0

261

29816

5.6

syntaxin-7 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.6896.6896.1	1.9364	0.2607	896.453	897.0075	4	224.6	66.7%	1	K.ETDKYIK.E	1
*	step01.6884.6884.2	2.6138	0.161	897.003	897.0075	5	597.2	83.3%	1	K.ETDKYIK.E	2

U	gi\|23503235\|ref\|NP_07	2	2	2.6%	1077	120974	6.6	caprin-2 isoform 2 [Homo sapiens]
U	gi\|50428933\|ref\|NP_00	2	2	2.5%	1127	125925	6.7	caprin-2 isoform 1 [Homo sapiens]
U	gi\|50428931\|ref\|NP_11	2	2	3.5%	793	87958	6.6	caprin-2 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13553.13553.2	2.355	0.1009	1673.542	1672.6084	177	138.4	29.2%	1	K.KQES#FKSWEAS#GK.H	2
	step01.4480.4480.2	2.5085	0.096	1998.567	1998.9392	1	277.0	37.1%	1	K.KQEIS#KSKPS#PS#QWK.Q	2

gi|118572613|ref|NP_0

2.5%

2752

299616

12.1

serine/arginine repetitive matrix protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.5296.5296.2	2.866	0.4051	1362.769	1362.4764	1	748.9	80.0%	1	K.RPNPDILDHER.K	2
*	step02.15609.15609.2	2.2582	0.145	2082.623	2082.9346	33	162.5	23.8%	1	R.EISSSPT#S#KNRS#HGRAK.R	2
*	step03.8908.8908.2	2.5563	0.2153	1358.605	1358.5494	1	1032.5	69.2%	2	R.TPAAAAAM*NLASPR.T	2
*	step03.10408.10408.2	2.9814	0.3408	1239.202	1239.4064	1	837.0	75.0%	2	R.TPTAPAVNLAGAR.T	2
*	step04.9363.9363.2	3.1412	0.4963	1378.608	1379.5469	1	1114.1	84.6%	3	R.TPQAPASANLVGPR.S	2

U	gi\|113415686\|ref\|XP_3	4	4	2.5%	1826	193666	9.0	PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
U	gi\|169167062\|ref\|XP_0	4	4	2.5%	1826	193679	9.0	PREDICTED: hypothetical protein LOC285556 [Homo sapiens]
U	gi\|113416182\|ref\|XP_9	4	4	2.5%	1826	193666	9.0	PREDICTED: hypothetical protein LOC285556 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step02.19262.19262.2	2.3251	0.0864	2267.158	2266.3284	16	94.7	26.5%	1	R.AFRS#LAYPYFEALNIS#SR.E	2
step06.23341.23341.2	2.2487	0.1065	1972.827	1971.869	93	119.9	22.9%	1	R.S#LAY#PYFEALNIS#SR.E	2
step01.5139.5139.2	2.5789	0.1178	1046.962	1046.0349	21	325.9	48.1%	1	R.ES#MGKGGGSR.V	2
step04.18505.18505.2	2.3164	0.1407	1919.585	1919.7109	1	807.3	36.2%	1	R.S#QVPSSSKGSQVSGT#S#R.P	2

gi|57863301|ref|NP_05

2.5%

1506

164886

8.2

CLIP-associating protein 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.19035.19035.2	2.2002	0.2499	2242.339	2241.5308	1	336.0	45.0%	1	K.FDHGAEAIVPTLFNLVPNSAK.V	2
*	step03.12845.12845.2	3.8022	0.5071	1682.123	1681.8304	1	1149.8	73.3%	4	R.SFQPLGPGYGISQSSR.L	2

U	gi\|134133226\|ref\|NP_0	2	2	2.5%	1075	121363	6.2	POTE ankyrin domain family member E [Homo sapiens]
U	gi\|153791352\|ref\|NP_0	2	2	2.5%	1075	121444	6.2	POTE ankyrin domain family member F [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17530.17530.2	3.2004	0.4355	1518.004	1516.6869	1	1062.3	85.0%	1	K.IWHHTFYNELR.V	2 2 2
	step02.14016.14016.2	3.5943	0.2628	1791.424	1791.94	1	1565.0	76.7%	1	K.SYELPDGQVITIGNER.F	2 2 2 2 2

Similarities: gi|4501885|ref|NP_001(2:0)
gi|63055057|ref|NP_00(1:1)
gi|4501881|ref|NP_001(2:0)
gi|213688375|ref|NP_0(1:1)

U	gi\|14211540\|ref\|NP_06	2	3	2.5%	1003	113671	8.8	putative helicase MOV-10 [Homo sapiens]
U	gi\|194272168\|ref\|NP_0	2	3	2.5%	1003	113671	8.8	putative helicase MOV-10 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.17432.17432.2	2.7406	0.2703	1891.231	1890.1965	1	345.9	46.4%	1	R.LLLHLEELQMEHDIR.H	2
	step03.14393.14393.2	3.0746	0.5167	1145.374	1145.293	1	1420.9	94.4%	2	K.HGLGYSLLER.L	2

gi|118498337|ref|NP_0

2610

289383

5.4

E3 ubiquitin-protein ligase HECTD1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12210.12210.2	3.0635	0.4215	1194.605	1194.3656	2	594.1	80.0%	2	R.GSPVVTHDLLR.S	2
*	step06.14728.14728.2	4.5528	0.5619	1980.586	1981.2394	1	869.6	63.2%	2	R.GQVKPSTSSQPILSAPGPTK.L	2
*	step06.18726.18726.2	2.6292	0.2043	1404.756	1404.7211	1	1391.8	86.4%	1	R.LVDLPISKPFFK.L	2
*	step03.13266.13266.3	4.4495	0.3262	2269.553	2269.4897	1	1343.6	40.8%	1	R.KVDATDASYPSVNTCVHYLK.L	3

gi|187761317|ref|NP_0

2002

223809

8.0

probable methylcytosine dioxygenase TET2 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.10299.10299.2	3.2405	0.1128	1677.12	1676.892	1	502.9	53.8%	1	R.KFKLLGDDPKEEEK.L	2
*	step06.215.215.3	3.8901	0.1095	2752.123	2750.894	29	505.3	20.2%	1	K.EEEKLES#HLQNLS#TLMAPTYKK.L	3
*	step04.9797.9797.3	3.5031	0.2743	1894.776	1895.1732	1	1554.5	46.9%	1	R.LSGPVMQQSQQPQPLQK.Q	3
*	step04.9772.9772.2	3.2877	0.3719	1894.799	1895.1732	1	1321.3	59.4%	2	R.LSGPVMQQSQQPQPLQK.Q	2

U	gi\|57863271\|ref\|NP_05	3	3	2.4%	1905	214823	7.4	hypothetical protein LOC23078 isoform a [Homo sapiens]
U	gi\|57863273\|ref\|NP_00	3	3	4.4%	1039	116940	8.2	hypothetical protein LOC23078 isoform b [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.14623.14623.2	2.6663	0.343	1036.381	1036.2528	1	913.2	81.2%	1	K.LVLLDGIHR.V	2
step04.16363.16363.3	5.2209	0.4211	2408.858	2407.7852	1	2591.3	45.2%	1	K.LGHILVVDEADKAPTNVTCILK.T	3
step06.17257.17257.2	2.9786	0.3126	1698.467	1698.9473	16	215.2	46.4%	1	K.HLQKFPTEGLSSVVR.N	2

U	gi\|189181720\|ref\|NP_0	2	3	2.4%	1363	146517	9.6	proteoglycan 4 isoform B [Homo sapiens]
U	gi\|67190163\|ref\|NP_00	2	3	2.4%	1404	151076	9.5	proteoglycan 4 isoform A [Homo sapiens]
U	gi\|189181724\|ref\|NP_0	2	3	2.6%	1270	136547	9.5	proteoglycan 4 isoform D [Homo sapiens]
U	gi\|189181722\|ref\|NP_0	2	3	2.5%	1311	141106	9.4	proteoglycan 4 isoform C [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.11821.11821.2	3.6572	0.1019	1724.998	1723.8068	1	664.8	50.0%	2	K.DRAT#NSKATTPKPQK.P	2
	step05.13972.13972.3	3.5214	0.1296	2329.454	2328.3345	1	1052.0	29.4%	1	R.RIT#EVWGIPS#PIDTVFT#R.C	3

gi|29029601|ref|NP_11

1157

129545

8.1

probable ATP-dependent RNA helicase DHX37 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.10505.10505.2	2.8202	0.5748	1108.036	1107.3081	1	1035.4	88.9%	2	R.TM*ATFPVAPR.Y	2
*	step05.18919.18919.2	4.3728	0.4942	2025.689	2026.3633	1	1348.2	64.7%	2	K.TPLLDDPVFIHPSSVLFK.E	2

gi|197927448|ref|NP_0

1151

125001

6.9

WD repeat-containing protein 6 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.15106.15106.2	2.9146	0.3378	1970.406	1969.2701	1	329.5	47.2%	1	K.VVPINTPTAAVDQTLFPGK.V	2
*	step03.16359.16359.2	3.1786	0.2068	1018.415	1018.2179	1	1104.2	87.5%	2	R.GMNWLAGLR.I	2

gi|157743284|ref|NP_7

1076

115077

6.5

serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14022.14022.2	4.1791	0.5776	1640.596	1640.8247	1	1998.3	76.7%	1	R.TPLHAAAFADNVSGLR.M	2
	step04.10619.10619.2	2.4342	0.4746	1114.926	1115.2587	1	672.6	77.8%	1	K.NTALHLACSK.G	2 2

Similarities: gi|304361757|ref|NP_0(1:1)

gi|31541941|ref|NP_05

839

94512

5.9

heat shock 70 kDa protein 4L [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14950.14950.2	3.8498	0.4957	1536.099	1536.7848	1	1964.8	84.6%	2	R.GCALQCAILSPAFK.V	2 2 2
*2	step02.10478.10478.1	1.9253	0.2006	731.419	731.97046	9	644.9	80.0%	2	K.IQLVMK.V	1 1

Similarities: gi|4506631|ref|NP_000(1:1)
gi|42544159|ref|NP_00(1:1)
gi|38327039|ref|NP_00(1:1)

gi|24307991|ref|NP_05

2517

281227

5.5

cullin-9 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.15372.15372.2	2.5785	0.3303	1994.404	1993.0515	1	556.3	53.1%	1	R.M*LDDYEEISAGDEGEFR.Q	2 2
*	step05.19052.19052.2	3.0054	0.3658	1105.227	1105.4435	1	1150.9	87.5%	4	R.TILMMLLNR.Y	2
	step05.17746.17746.2	3.0146	0.2868	1074.338	1073.3148	1	484.5	92.9%	7	R.FWPIIQIR.I	2 2
*	step04.9721.9721.2	2.4039	0.2092	1202.565	1202.3877	1	1048.6	80.0%	1	R.VSAIHEVPPPR.S	2
*	step05.16168.16168.2	3.9815	0.4457	1512.493	1512.738	1	1350.5	83.3%	2	R.LLAILQHSAQDFR.V	2

Similarities: gi|270265835|ref|NP_0(2:3)

gi|51558724|ref|NP_11

1594

177675

7.9

A disintegrin and metalloproteinase with thrombospondin motifs 12 preproprotein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.16953.16953.2	2.3256	0.0978	2559.958	2560.3933	103	180.5	17.9%	1	R.WSPWSHCS#RT#CGAGVQS#AER.L	2
*	step02.11085.11085.2	2.6359	0.1675	1827.586	1826.8634	1	394.2	31.7%	1	K.PNKGTIS#NGKNPPT#LK.P	2

gi|4759146|ref|NP_004

1529

169869

7.1

slit homolog 2 protein precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.20939.20939.2	4.2554	0.3942	1842.379	1842.1732	1	1004.7	60.0%	1	R.NHLQLFPELLFLGTAK.L	2
*	step06.18137.18137.3	4.4648	0.3315	2298.018	2298.6375	1	1941.5	43.1%	1	R.AIQTMHLAQNPFICDCHLK.W	3

gi|162809334|ref|NP_0

1482

163862

6.4

pregnancy zone protein precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.21499.21501.3	3.9413	0.0977	3364.515	3364.5244	200	407.1	17.8%	1	K.QQNAQGGFSSTQDTVVALHALSRYGAATFT#R.T	3
*	step04.17505.17505.2	2.5281	0.0805	1485.701	1485.3059	30	351.7	38.0%	1	R.Y#GAATFT#RT#EK.T	2

gi|261337188|ref|NP_0

1277

141435

7.9

spermatogenesis-associated protein 13 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.12659.12659.2	2.7118	0.1801	1919.148	1919.6279	13	225.2	24.6%	2	R.RS#S#SQDEERT#EAQR.T	2
	step05.15365.15365.2	2.4444	0.1045	1992.917	1992.0696	23	207.4	28.9%	1	R.VQEDKEM*GMEIS#ENQK.K	2

U	gi\|238908503\|ref\|NP_0	2	2	2.3%	1133	127785	8.5	DNA-directed RNA polymerase III subunit RPC2 isoform 1 [Homo sapiens]
U	gi\|238908505\|ref\|NP_0	2	2	2.4%	1075	121120	8.6	DNA-directed RNA polymerase III subunit RPC2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.6742.6742.2	2.2004	0.0865	1485.533	1486.574	13	159.1	45.5%	1	K.M*DRQGVT#QVLSR.L	2
	step02.9876.9876.2	2.6357	0.0964	1811.218	1810.0094	7	198.9	35.9%	1	K.M*LLRQT#RRPEIGDK.F	2

gi|122114658|ref|NP_0

2.2%

1842

197779

6.8

hypothetical protein LOC23053 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.3699.3699.2	2.2908	0.1614	2163.25	2164.0518	1	741.0	27.3%	1	K.QSAGPNS#PT#GGGGGGGSGGTRMR.D	2
*	step04.11844.11844.2	2.3973	0.1837	2044.689	2044.0468	90	172.7	19.1%	2	K.EPGTKRKGLGEGVPS#S#QR.G	2

U	gi\|270132929\|ref\|NP_0	2	3	2.2%	1687	181419	7.0	ras-responsive element-binding protein 1 isoform 2 [Homo sapiens]
U	gi\|51173737\|ref\|NP_00	2	3	2.1%	1742	187550	7.1	ras-responsive element-binding protein 1 isoform 1 [Homo sapiens]
U	gi\|51173735\|ref\|NP_00	2	3	2.2%	1687	181419	7.0	ras-responsive element-binding protein 1 isoform 2 [Homo sapiens]
U	gi\|270132935\|ref\|NP_0	2	3	2.5%	1476	159330	8.1	ras-responsive element-binding protein 1 isoform 3 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.20952.20952.2	2.2055	0.1262	2230.745	2230.2363	2	315.8	29.2%	1	K.SLSSAS#S#LDRHMLVHSGER.P	2
	step04.20497.20497.2	2.6476	0.1145	2088.361	2089.1465	145	91.8	31.4%	2	R.KLSHDAES#EREDPAPAKK.M	2

gi|39725938|ref|NP_00

2.2%

1390

155641

8.5

DNA-directed RNA polymerase III subunit RPC1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.20132.20132.2	2.6924	0.1031	2131.089	2130.1536	5	243.3	29.4%	1	R.EGLVDTAVKTAET#GY#MQR.R	2
*	step06.19500.19500.2	2.611	0.1911	1546.644	1545.8468	2	798.6	75.0%	1	K.MKESVLMLASFEK.T	2

gi|19924129|ref|NP_00

2.2%

1312

153892

6.9

DNA repair protein RAD50 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17105.17105.3	4.2953	0.4212	1850.465	1850.0642	1	2006.0	50.0%	1	R.HSDELTSLLGYFPNKK.Q	3
*	step03.13118.13118.2	2.2076	0.172	1686.754	1685.9086	2	413.1	54.2%	1	K.IQERWLQDNLTLR.K	2

U	gi\|21626466\|ref\|NP_06	2	3	2.2%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|62750354\|ref\|NP_95	2	3	2.2%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|303227928\|ref\|NP_0	2	3	3.4%	559	62576	6.0	matrin-3 isoform b [Homo sapiens]
U	gi\|303227926\|ref\|NP_0	2	3	2.2%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]
U	gi\|303227924\|ref\|NP_0	2	3	2.2%	847	94623	6.3	matrin-3 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17133.17133.2	5.1109	0.4415	2037.931	2038.2926	1	1120.4	63.9%	2	R.VIHLSNLPHSGYSDSAVLK.L	2
	step06.17140.17140.3	3.5845	0.496	2038.379	2038.2926	1	467.3	33.3%	1	R.VIHLSNLPHSGYSDSAVLK.L	3

U	gi\|113430845\|ref\|XP_0	7	11	2.1%	4096	465469	7.2	PREDICTED: DNA-dependent protein kinase catalytic subunit-like [Homo sapiens]
U	gi\|13654237\|ref\|NP_00	7	11	2.1%	4128	469093	7.1	DNA-dependent protein kinase catalytic subunit isoform 1 [Homo sapiens]
U	gi\|126032350\|ref\|NP_0	7	11	2.1%	4097	465505	7.2	DNA-dependent protein kinase catalytic subunit isoform 2 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step04.13332.13332.2	2.695	0.1932	970.983	971.2125	1	1254.2	87.5%	3	K.LPVLAGCLK.G	2
step05.13850.13850.2	3.6596	0.3586	1499.043	1497.7184	1	1011.7	66.7%	1	R.NCISTVVHQGLIR.I	2
step06.14872.14872.2	2.2471	0.1282	1131.463	1131.2427	66	234.4	47.6%	1	R.EFLKWS#IK.Q	2
step05.15056.15056.2	2.7198	0.3104	1374.683	1374.6118	1	1946.4	86.4%	1	R.LYSLALHPNAFK.R	2
step05.14592.14592.2	2.9434	0.4541	1206.277	1206.4626	1	1073.4	90.0%	2	K.LGNPIVPLNIR.L	2
step05.18685.18685.2	3.2157	0.4078	1343.068	1343.6611	1	1447.5	80.0%	2	R.FM*NAVFFLLPK.F	2
step04.16157.16157.3	3.5228	0.2846	2251.79	2250.5742	1	1238.6	41.2%	1	R.KLAGANPAVITCDELLLGHEK.A	3

U	gi\|22538387\|ref\|NP_00	5	5	2.1%	3907	452990	5.0	A-kinase anchor protein 9 isoform 2 [Homo sapiens]
U	gi\|22538393\|ref\|NP_67	5	5	2.1%	3899	452113	5.0	A-kinase anchor protein 9 isoform 3 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step06.18527.18527.2	2.439	0.0884	1519.978	1519.6628	1	273.3	54.2%	1	K.QQIDGLQNEMSQK.I	2
step05.17792.17792.3	3.7399	0.118	3280.281	3281.632	195	486.5	18.5%	1	K.TFVAETLEMGEVVEKDTTELMEKLEVT#K.R	3
step02.11697.11697.2	2.9095	0.1233	1786.77	1787.0048	10	393.4	53.6%	1	K.EQVEIAEKNVLEKEK.K	2
step01.7066.7066.2	2.3748	0.1185	1604.285	1603.3927	25	394.2	32.7%	1	R.AT#ELQEQLS#S#EK.M	2
step01.4809.4809.2	2.3721	0.1015	1949.894	1950.0597	81	169.0	25.0%	1	K.LELET#T#LKAQHKHLK.E	2

U	gi\|148491080\|ref\|NP_0	3	5	2.1%	1723	182814	7.0	trinucleotide repeat-containing gene 6B protein isoform 2 [Homo sapiens]
U	gi\|241982729\|ref\|NP_0	3	5	2.0%	1833	194001	6.8	trinucleotide repeat-containing gene 6B protein isoform 1 [Homo sapiens]

Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
step05.10188.10188.2	2.9525	0.4301	1989.395	1990.1217	1	505.8	52.9%	1	K.GHPLPENQGNAQAPCWGR.S	2
step06.18695.18695.3	5.9059	0.4738	2242.661	2243.502	1	2276.6	50.0%	2	R.SYRPTHPDCQAVLQTLLSR.T	3
step06.18706.18706.2	3.8973	0.4551	2243.097	2243.502	1	502.6	50.0%	2	R.SYRPTHPDCQAVLQTLLSR.T	2

gi|39652628|ref|NP_05

2.1%

1118

121888

8.9

constitutive coactivator of PPAR-gamma-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14011.14011.2	2.2136	0.1896	1301.894	1301.1094	1	442.1	44.4%	1	R.AIGY#Y#SAT#SK.P	2
*	step06.17712.17712.2	2.6345	0.1707	1509.822	1510.8052	33	307.3	54.2%	1	K.NRLPPEFSPVIIK.E	2

gi|4758650|ref|NP_004

2.1%

957

109495

6.2

kinesin heavy chain isoform 5C [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.11528.11528.2	2.3458	0.2636	1668.073	1667.6599	1	444.9	45.5%	1	K.T#HVPYRDSKM*T#R.I	2
	step05.11269.11269.1	1.9788	0.1883	974.092	973.11523	6	257.4	64.3%	1	K.RLRATAER.V	1

U	gi\|289547701\|ref\|NP_1	2	3	2.1%	839	95770	9.2	zinc finger protein 347 isoform b [Homo sapiens]
U	gi\|289547705\|ref\|NP_0	2	3	2.1%	840	95842	9.2	zinc finger protein 347 isoform a [Homo sapiens]
U	gi\|289547703\|ref\|NP_0	2	3	2.1%	840	95842	9.2	zinc finger protein 347 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.16431.16431.3	3.7098	0.1559	2248.132	2249.4731	1	1196.8	44.1%	1	R.HQRIHTGEKPYKYNEYGK.A	3
	step06.17118.17118.2	3.3122	0.2624	2249.001	2249.4731	1	802.7	52.9%	2	R.HQRIHTGEKPYKYNEYGK.A	2

gi|38683807|ref|NP_11

2.0%

2603

274256

6.5

ankyrin repeat domain-containing protein 17 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.15803.15803.2	2.3407	0.1519	1950.332	1950.1664	4	202.7	31.0%	1	K.VERELQLKT#QQQLKK.Q	2
	step05.17390.17390.2	2.2801	0.1161	1897.533	1896.3109	4	150.5	44.4%	1	K.LGISPLMLAAMNGHTAAVK.L	2 2
	step02.15760.15760.2	2.3708	0.1819	1882.095	1881.1002	155	117.7	30.6%	1	K.TGLTPLMEAASGGYAEVGR.V	2 2 2

Similarities: gi|38683816|ref|NP_94(2:1)
gi|37620163|ref|NP_06(1:2)

gi|31982906|ref|NP_11

2.0%

1302

149079

5.7

cingulin-like protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.9177.9177.2	2.2353	0.1161	1244.138	1244.4692	43	376.7	61.1%	1	R.KRERELTALK.G	2
*	step04.16501.16501.2	2.2179	0.0858	2001.405	2001.8519	8	360.9	32.0%	1	R.ES#VEEAT#KNVEVLAS#R.S	2

gi|24797086|ref|NP_00

2.0%

1115

125545

4.9

importin-5 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17258.17258.2	3.4409	0.3731	1075.469	1075.329	1	1687.2	93.8%	2	K.ITFLLQAIR.N	2
*	step05.17762.17762.2	3.4226	0.3495	1496.344	1496.6891	1	1074.2	75.0%	1	K.VSDILHSIFSSYK.E	2

gi|82659109|ref|NP_06

5183

573849

6.0

E3 ubiquitin-protein ligase UBR4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17994.17994.2	2.5483	0.1511	1295.199	1295.5481	1	973.8	77.8%	2	R.VCLNLPYFLR.Y	2
*	step06.18361.18361.2	2.2958	0.1481	1051.3	1051.3091	2	881.4	85.7%	1	R.LLLIWQHK.A	2
*	step02.16982.16982.3	3.7307	0.0922	3204.916	3204.349	72	561.3	19.5%	1	R.LQAWLT#RMTTSPPKDS#DQLDVIQENR.Q	3
*	step06.19978.19978.2	3.985	0.4196	1199.464	1199.5083	1	2073.2	90.0%	3	K.ITVLQLSALLK.Q	2
*	step06.17959.17959.2	4.0446	0.4765	1958.678	1958.2742	1	706.5	59.4%	2	R.SIAIMRPNNLVHFTESK.L	2
*	step06.17541.17541.2	3.0767	0.3481	1369.69	1368.6306	1	660.6	63.6%	1	R.SALNEVHLVVMR.L	2
*	step03.12064.12064.2	2.7672	0.119	1751.506	1750.1788	4	502.7	46.4%	1	R.LRCALSLFLMAVNIK.T	2

gi|224028289|ref|NP_0

2481

270882

6.9

tetratricopeptide repeat protein 28 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.14657.14657.2	2.2215	0.1614	1727.454	1726.8761	7	363.9	40.0%	1	R.AHGNLGSAFFSKGNYR.E	2
*	step03.15863.15863.2	2.2244	0.1214	1915.206	1914.8174	6	404.4	26.2%	1	R.VSVSS#KGS#ISTPNS#PVK.M	2
*	step02.10701.10701.2	2.4097	0.1295	1690.169	1690.7051	25	233.0	35.4%	1	K.FLSPGRFFPS#S#KC.-	2

U	gi\|55770895\|ref\|NP_00	2	3	1.9%	1302	146086	5.3	protein LAP2 isoform 7 [Homo sapiens]
U	gi\|8923909\|ref\|NP_061	2	3	1.8%	1371	153926	5.5	protein LAP2 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.18457.18457.1	1.8634	0.1847	1293.797	1293.5786	1	184.6	54.5%	2	R.LTFIPGFIGSLK.Q	1
	step03.14128.14128.2	2.6743	0.2313	1643.017	1641.9395	1	621.1	58.3%	1	K.M*VLTNYMFPQQPR.T	2

gi|240255505|ref|NP_0

1235

139699

7.5

potassium channel subfamily T member 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19191.19191.2	2.2271	0.0933	2285.009	2284.4275	14	205.8	25.5%	1	R.CS#GNEVYHIRMGDSKFFR.E	2
*	step03.20418.20418.2	2.3116	0.2877	1755.352	1754.7329	24	190.3	31.2%	1	R.MGDS#KFFREY#EGK.S	2

gi|221316741|ref|NP_0

953

107271

7.0

N-acetyltransferase 10 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.14395.14395.2	2.6908	0.2227	1037.536	1037.3207	1	1093.3	93.8%	2	R.KDLPPLLLK.L	2 2
	step03.14730.14730.2	2.7466	0.3284	1022.387	1022.2246	3	537.7	87.5%	2	R.AGFVPVYLR.Q	2 2

Similarities: gi|221316723|ref|NP_0(2:0)

gi|55749531|ref|NP_00

895

100228

5.7

splicing factor 3B subunit 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12782.12782.2	2.3699	0.3429	723.137	722.9417	1	406.8	90.0%	1	K.LLVHLK.A	2
*	step06.18708.18708.2	2.941	0.299	1309.111	1308.62	1	439.1	85.0%	2	K.VPPPWLIAMQR.Y	2

U	gi\|4502353\|ref\|NP_001	2	2	1.9%	736	81958	5.0	transcription regulator protein BACH1 isoform a [Homo sapiens]
U	gi\|45827690\|ref\|NP_99	2	2	1.9%	736	81958	5.0	transcription regulator protein BACH1 isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10806.10806.2	2.4833	0.1113	1646.405	1647.6127	2	312.2	44.4%	1	K.FLDS#TADQQECPR.K	2
	step03.12516.12516.2	2.9307	0.1629	1776.4	1775.7856	3	615.1	41.0%	1	K.FLDS#TADQQECPRK.K	2

U	gi\|289577134\|ref\|NP_0	2	3	1.8%	2243	262325	5.4	Golgin subfamily A member 4 isoform 1 [Homo sapiens]
U	gi\|6715600\|ref\|NP_002	2	3	1.8%	2230	261137	5.4	Golgin subfamily A member 4 isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.11414.11414.2	3.0489	0.0971	1674.522	1674.8744	25	353.2	46.4%	2	K.ADIESLVTEKEALQK.E	2
	step06.24753.24753.2	2.5106	0.1379	3185.713	3185.1924	40	104.4	13.3%	1	K.ES#NLETELKSQT#ARIMELEDHIT#QK.T	2

gi|153945715|ref|NP_0

1.8%

1742

202809

7.7

myosin-Vc [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.1672.1672.2	2.2637	0.1038	1677.49	1677.0033	2	622.0	50.0%	1	R.KIVTSSETVVKPMTR.P	2
*	step03.16226.16226.2	2.2807	0.1068	2149.43	2150.3027	27	135.2	29.7%	1	R.M*AT#ITMQAYS#RGFLARR.R	2

gi|110815815|ref|NP_0

1.8%

1406

162189

8.1

centlein isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.23970.23970.2	2.714	0.1142	1749.95	1748.845	6	584.0	41.7%	1	K.LYNELHICFETT#K.S	2
*	step02.6830.6830.2	2.4052	0.0823	1538.528	1537.4827	1	400.9	43.2%	1	K.IS#ELETEVT#SLR.R	2

U	gi\|94721239\|ref\|NP_03	2	3	1.8%	1262	144498	6.1	isoleucyl-tRNA synthetase, cytoplasmic [Homo sapiens]
U	gi\|94721241\|ref\|NP_00	2	3	1.8%	1262	144498	6.1	isoleucyl-tRNA synthetase, cytoplasmic [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.14446.14446.2	2.7757	0.2317	1174.486	1174.4174	1	1403.4	88.9%	1	R.LYLINSPVVR.A	2
	step05.9305.9305.2	2.8212	0.3348	1399.678	1399.6165	1	371.2	58.3%	2	K.APLKPYPVSPSDK.V	2

gi|46048234|ref|NP_06

1.8%

1167

131616

7.1

nucleolar protein 8 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17915.17915.2	2.4426	0.1827	1051.29	1051.3074	1	654.6	88.9%	1	K.LHSLIGLGIK.N	2
*	step04.13480.13480.2	3.2664	0.2972	1378.421	1377.5693	1	972.3	85.0%	2	K.FKDIIHYDPTK.Q	2

U	gi\|113430175\|ref\|XP_0	2	2	1.7%	1934	204058	10.7	PREDICTED: hypothetical protein LOC728307 [Homo sapiens]
U	gi\|169217315\|ref\|XP_0	2	2	1.6%	2061	217745	10.9	PREDICTED: hypothetical protein LOC728317 [Homo sapiens]
U	gi\|113430659\|ref\|XP_0	2	2	1.6%	2061	217774	10.9	PREDICTED: hypothetical protein LOC728317 [Homo sapiens]
U	gi\|113430177\|ref\|XP_0	2	2	1.6%	2028	214266	10.9	PREDICTED: hypothetical protein LOC728317 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.16742.16742.2	2.3075	0.0887	2319.353	2318.2932	28	220.8	23.5%	1	K.DIT#PT#PGALRGYKS#WVCR.A	2
	step01.15408.15408.2	2.2202	0.0996	1721.282	1720.8395	1	278.7	38.1%	1	K.CKAIAST#PGTLHVER.S	2

gi|62241042|ref|NP_00

1.7%

1512

170590

7.3

bifunctional aminoacyl-tRNA synthetase [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.13908.13908.2	2.3147	0.338	1241.567	1242.4071	1	542.9	81.2%	1	R.KPYIWEYSR.L	2
*	step06.18618.18618.2	3.6546	0.3897	1959.291	1959.3053	1	561.5	50.0%	1	K.SLCIPFKPLCELQPGAK.C	2

gi|4885583|ref|NP_005

1.7%

1354

158174

5.9

rho-associated protein kinase 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.12049.12049.2	2.9052	0.0898	1720.38	1719.787	2	426.9	47.2%	1	K.DEMEQKCRTS#NIK.L	2
*	step02.10562.10562.2	2.6238	0.2625	1305.177	1305.3683	30	179.2	51.9%	1	K.QCS#M*LDVDLK.Q	2

U	gi\|207113160\|ref\|NP_0	2	3	1.7%	1488	152105	9.0	treacle protein isoform d [Homo sapiens]
U	gi\|57164975\|ref\|NP_00	2	3	1.8%	1411	144314	9.0	treacle protein isoform b [Homo sapiens]
U	gi\|207113164\|ref\|NP_0	2	3	1.8%	1412	144413	9.0	treacle protein isoform f [Homo sapiens]
U	gi\|207113162\|ref\|NP_0	2	3	1.8%	1451	148352	8.9	treacle protein isoform e [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step03.10232.10232.2	3.3345	0.4907	1282.398	1282.4711	1	865.8	73.1%	2	K.GSLGQGTAPVLPGK.T	2
	step05.10123.10123.2	2.5357	0.2416	1324.52	1324.5348	2	304.0	59.1%	1	R.TNVVTMPTAHPR.I	2

gi|11321597|ref|NP_00

1.7%

1356

151526

5.9

vascular endothelial growth factor receptor 2 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.7427.7427.2	2.3078	0.1653	1338.256	1337.3331	1	543.8	50.0%	1	K.Y#LGY#PPPEIK.W	2
*	step06.17521.17521.2	2.3279	0.1202	1539.776	1538.6458	1	573.5	47.2%	1	K.AGHVLTIM*EVS#ER.D	2

U	gi\|164607124\|ref\|NP_0	2	4	1.7%	1328	149323	6.7	Fanconi anemia group I protein isoform 1 [Homo sapiens]
U	gi\|82830440\|ref\|NP_06	2	4	1.8%	1268	142569	6.8	Fanconi anemia group I protein isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step02.10977.10977.2	2.7963	0.2105	1424.533	1424.278	2	481.5	50.0%	2	K.GSPCS#EEAGT#LR.R	2
	step06.21165.21165.2	3.4287	0.3107	1254.865	1254.5026	1	1860.2	90.0%	2	K.FVSSLLTALFR.D	2

gi|62198237|ref|NP_00

1.6%

2286

261515

6.4

DNA polymerase epsilon catalytic subunit A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.10075.10075.2	2.844	0.2091	1825.517	1824.9762	21	171.0	31.1%	1	R.AAVHGLS#MQQEIGFQK.D	2
*	step02.17288.17288.2	2.8207	0.2359	2353.612	2353.5095	19	256.9	29.8%	1	K.RYAVFNEDGS#LAELKGFEVK.R	2

gi|38683816|ref|NP_94

1.6%

2352

246748

6.7

ankyrin repeat domain-containing protein 17 isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step05.17390.17390.2	2.2801	0.1161	1897.533	1896.3109	4	150.5	44.4%	1	K.LGISPLMLAAMNGHTAAVK.L	2 2
	step02.15760.15760.2	2.3708	0.1819	1882.095	1881.1002	155	117.7	30.6%	1	K.TGLTPLMEAASGGYAEVGR.V	2 2 2

Similarities: gi|38683807|ref|NP_11(2:0)
gi|37620163|ref|NP_06(1:1)

gi|83035129|ref|NP_91

1.5%

1925

217248

6.5

coiled-coil domain-containing protein 108 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20213.20213.2	2.3404	0.2229	2672.944	2672.9128	115	104.2	21.4%	1	R.T#HLARGLTLY#PPDILDAM*LKEK.K	2
	step01.7781.7781.1	1.8236	0.1473	936.307	934.9279	2	260.0	75.0%	1	K.EEERDEK.E	1

gi|122891870|ref|NP_9

1.5%

1907

213700

4.8

melanoma inhibitory activity protein 3 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.27796.27796.2	2.2597	0.1724	1372.895	1372.406	4	410.3	48.1%	1	K.EQQS#LQRFQK.Y	2
*	step05.16870.16870.2	3.1526	0.1518	2108.669	2109.3438	24	297.5	31.4%	1	R.TQTAIS#VVEEDLKLLQLK.L	2

U	gi\|37620163\|ref\|NP_06	2	2	1.4%	2617	277173	5.9	ANKHD1-EIF4EBP3 protein [Homo sapiens]
U	gi\|46519147\|ref\|NP_06	2	2	1.4%	2542	269455	5.7	ankyrin repeat and KH domain-containing protein 1 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13462.13462.2	4.032	0.3649	1852.54	1853.0282	1	1187.1	75.0%	1	R.VLLDHGAGINTHSNEFK.E	2
	step02.15760.15760.2	2.3708	0.1819	1882.095	1881.1002	155	117.7	30.6%	1	K.TGLTPLMEAASGGYAEVGR.V	2 2 2

Similarities: gi|38683807|ref|NP_11(1:1)
gi|38683816|ref|NP_94(1:1)

gi|120587019|ref|NP_0

2279

251110

7.2

zinc finger protein 318 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.11002.11002.2	2.4195	0.1047	2040.682	2040.845	57	95.7	25.0%	1	K.SKSPEKVSS#FSNSS#S#NK.E	2
*	step01.9287.9287.2	2.3484	0.117	1770.109	1770.8555	27	137.6	33.3%	1	K.AFGGEEVILKGS#PEEK.V	2

gi|163965366|ref|NP_0

2078

205419

9.6

nascent polypeptide-associated complex subunit alpha isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step01.12291.12291.2	2.208	0.2032	1838.73	1838.9141	1	361.3	31.2%	1	K.S#AGIPVPTPSAKQPVT#K.N	2
	step05.16777.16777.2	4.4443	0.3016	1550.662	1550.8661	1	2014.3	79.2%	2	K.NILFVITKPDVYK.S	2

gi|33946282|ref|NP_05

1812

202023

5.0

protein virilizer homolog isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.18816.18816.2	3.4949	0.3018	1265.138	1265.5269	1	1983.9	86.4%	4	R.LLALLDALASHK.A	2
*	step03.2028.2028.2	3.432	0.3543	1552.237	1551.8109	1	1422.2	70.8%	1	R.YAEIFQDLLALVR.S	2

gi|187960100|ref|NP_0

1083

123923

6.7

ubiquitin-protein ligase E3C [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.19412.19412.2	2.4022	0.2558	1645.8	1646.0559	87	248.8	39.3%	1	R.MITGSMVPLLQVISR.G	2
*	step05.18640.18640.2	2.8015	0.2478	1663.243	1662.0553	2	360.2	46.4%	1	R.M*ITGSMVPLLQVISR.G	2

U	gi\|109826564\|ref\|NP_0	2	2	1.3%	2839	319372	7.4	neurofibromin isoform 1 [Homo sapiens]
U	gi\|4557793\|ref\|NP_000	2	2	1.3%	2818	317032	7.3	neurofibromin isoform 2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.15776.15776.2	2.2913	0.1337	2038.191	2038.917	9	284.4	28.0%	1	K.PY#EIVVDLTHT#GPS#NR.F	2
	step05.16129.16129.2	2.434	0.1112	2077.859	2077.3254	45	143.8	28.9%	1	K.DTKVSIKVGSTAVQVTSAER.T	2

gi|109637791|ref|NP_0

1.3%

2624

293883

5.1

transcription factor TFIIIB component B'' homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.19303.19303.2	2.6204	0.1392	2235.942	2235.3745	5	233.1	27.8%	1	R.AHSKKEEPVLEKVT#TDQSK.E	2
*	step02.9614.9614.2	2.7704	0.2673	1861.436	1860.6388	11	242.2	27.7%	1	K.ELT#NVFEET#GES#HK.G	2

gi|21264565|ref|NP_00

1.3%

2285

242042

6.7

AT-rich interactive domain-containing protein 1A isoform a [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.14932.14932.2	2.5376	0.2165	1606.6	1606.6198	1	435.9	41.7%	2	K.RPMDGT#Y#GPPAKR.H	2
	step05.12106.12106.2	2.9993	0.1083	1704.434	1704.709	2	568.2	42.2%	2	R.SSTLT#EDGAKSSEAIK.E	2

gi|103471997|ref|NP_0

1.3%

1720

194810

7.0

DNA-directed RNA polymerase I subunit RPA1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.18175.18175.2	2.3296	0.1971	1286.435	1286.5713	1	542.0	70.0%	2	K.LTITFPAMVHR.T	2
*	step03.9929.9929.2	2.5466	0.3475	1349.461	1350.6306	2	311.3	59.1%	2	K.TPMMSVPVLNTK.K	2

gi|61676188|ref|NP_11

1.2%

4374

481896

5.2

E3 ubiquitin-protein ligase HUWE1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.22690.22690.2	3.2498	0.1706	1661.349	1661.1089	1	604.9	65.4%	2	R.IPIPLMDYILNVMK.F	2
*	step06.17914.17914.2	3.5457	0.4034	1632.011	1631.8594	1	617.7	57.1%	1	K.LPGGVQNFPQFSALR.F	2
*	step06.36138.36138.2	2.3401	0.1086	1620.591	1620.4136	12	258.9	30.9%	1	R.SS#ES#ELCIET#PK.L	2
*	step05.16838.16838.2	3.1587	0.4692	1251.443	1251.5001	1	1254.2	90.0%	2	R.HVLDTLIQLAK.V	2

U	gi\|18375646\|ref\|NP_54	2	2	1.2%	2485	276903	6.4	tyrosine-protein phosphatase non-receptor type 13 isoform 1 [Homo sapiens]
U	gi\|5453992\|ref\|NP_006	2	2	1.3%	2466	274930	6.4	tyrosine-protein phosphatase non-receptor type 13 isoform 2 [Homo sapiens]
U	gi\|18375650\|ref\|NP_54	2	2	1.2%	2490	277506	6.4	tyrosine-protein phosphatase non-receptor type 13 isoform 4 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step06.17691.17691.2	2.5288	0.0979	1509.224	1510.4604	172	221.4	34.6%	1	R.AISTGS#LASST#LNK.L	2
	step05.14884.14884.2	2.753	0.121	2053.456	2052.254	10	191.5	35.4%	1	R.WSIVSSPEREIT#LVNLK.K	2

U	gi\|28416946\|ref\|NP_51	2	2	1.2%	2054	233113	6.3	myosin-XVIIIa isoform a [Homo sapiens]
U	gi\|42794779\|ref\|NP_97	2	2	1.2%	2039	231238	6.2	myosin-XVIIIa isoform b [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.19458.19458.2	2.206	0.2071	1805.18	1803.9772	35	217.9	33.3%	1	R.MSAAELRSLEEMS#LR.R	2
	step02.9857.9857.2	2.231	0.1366	1329.296	1328.4149	4	451.9	48.1%	1	K.S#RDEIVEMIR.Q	2

gi|126116596|ref|NP_0

3477

409801

10.4

abnormal spindle-like microcephaly-associated protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.504.504.2	2.284	0.167	2560.473	2560.5342	25	204.5	20.0%	1	R.RVS#NIQNVNKT#FSVS#QKVDR.V	2
*	step01.4422.4422.2	2.3213	0.2799	2056.353	2055.2224	118	116.1	26.6%	1	K.AAVVT#LQS#AYRGM*KVRK.R	2

gi|221219020|ref|NP_1

2873

333185

7.3

WD repeat-containing protein 87 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.20297.20297.2	2.4141	0.0821	2280.94	2281.2312	1	233.8	29.4%	1	K.LLLNDT#INKS#KQPS#EDPK.N	2
*	step02.460.460.2	2.891	0.1582	1680.125	1680.6752	28	233.4	35.4%	1	R.VRAIS#NTEY#PKNK.E	2

gi|38490688|ref|NP_84

2623

290836

9.1

immunoglobulin superfamily member 10 isoform 1 precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.13120.13120.2	2.215	0.1192	1161.075	1161.3356	14	381.3	66.7%	1	R.NSTVNIPLFR.R	2
*	step05.20095.20095.2	2.2257	0.1334	2440.282	2439.4172	63	207.4	18.9%	1	K.STTAFS#ATVLNVT#CLS#CLPR.E	2

gi|116089337|ref|NP_0

1575

180578

5.6

ras GTPase-activating-like protein IQGAP2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.18660.18660.2	2.7707	0.1317	2257.628	2258.1963	2	318.6	25.9%	1	R.DDY#KT#LVGSENPPLT#VIR.K	2
*	step03.20187.20187.2	2.2987	0.09	2258.427	2258.1963	13	188.2	22.4%	1	R.DDY#KTLVGS#ENPPLT#VIR.K	2

gi|126012497|ref|NP_0

1.0%

4490

514668

6.3

dynein heavy chain 8, axonemal [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*2	step01.9008.9008.1	2.0431	0.2277	801.592	802.0022	1	139.0	80.0%	2	K.RLLFPR.F	1
*	step01.9766.9766.2	2.3039	0.1208	2377.513	2378.4	3	368.2	25.9%	1	R.RRAHVT#PKSY#LSFINGY#K.N	2
*	step05.10087.10087.3	3.5427	0.1932	2558.898	2559.6482	95	191.9	20.4%	1	K.TWIKSKEKENDLQVT#S#LNHK.Y	3

U	gi\|120587023\|ref\|NP_0	2	2	1.0%	2785	318385	7.4	small subunit processome component 20 homolog [Homo sapiens]
U	gi\|89036565\|ref\|XP_94	2	2	1.0%	2785	318400	7.4	PREDICTED: small subunit processome component 20 homolog [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
2	step02.14355.14355.2	2.6892	0.1011	3067.368	3067.9465	11	196.7	16.1%	1	K.S#LSDNGQPGTPDPADS#GGTSAKESECITK.P	2
2	step02.14355.14355.2	2.6892	0.1011	3067.368	3067.9465	11	196.7	16.1%	1	K.SLS#DNGQPGTPDPADS#GGTSAKESECITK.P	2

gi|4503355|ref|NP_001

1.0%

1865

215374

7.6

dedicator of cytokinesis protein 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.16593.16593.2	2.2401	0.1113	2267.555	2267.2612	60	251.0	22.4%	1	R.GSRPRSMVRS#FT#MPSSS#R.P	2
*	step05.1220.1220.2	2.2645	0.1125	1713.963	1713.6437	28	238.3	33.3%	1	R.S#MVRS#FT#MPSSSR.P	2

gi|115495445|ref|NP_4

1.0%

1341

152674

6.3

ankyrin repeat domain-containing protein 30A [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.8463.8463.2	2.2324	0.2101	1012.14	1011.0949	48	519.6	61.9%	1	K.T#KVLEKGR.S	2
2	step02.7198.7198.1	2.0222	0.1187	705.41	704.90186	2	281.0	80.0%	1	K.EIAMLK.L	1 1

Similarities: gi|38505218|ref|NP_11(1:1)

gi|4502443|ref|NP_001

0.9%

2649

306754

6.3

bullous pemphigoid antigen 1 isoform 1e precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step01.11576.11576.2	2.2409	0.126	1247.217	1246.3492	7	266.7	66.7%	2	R.ELDQKEENIK.S	2
*	step03.204.204.2	2.4333	0.1536	1858.871	1859.0505	2	627.8	42.9%	1	K.TVEEVQKTLNKFLT#K.A	2

gi|54607053|ref|NP_00

0.9%

2671

292708

7.4

translational activator GCN1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step06.17833.17833.2	2.447	0.2146	1467.548	1467.7405	1	700.6	62.5%	1	K.LYRPPPVLDALGR.V	2
*	step06.18258.18258.2	3.6285	0.2632	1183.131	1183.469	1	2418.8	95.0%	2	K.KGVTSILPVLR.E	2

gi|119372317|ref|NP_6

3549

402118

6.3

xin actin-binding repeat-containing protein 2 isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.17759.17759.2	3.3541	0.2217	1867.965	1867.0931	3	403.8	50.0%	2	K.KTITEEVIQGDVKSYR.M	2
*	step06.18769.18771.2	2.4308	0.1951	1626.701	1626.8009	3	302.7	44.4%	1	K.RSEIIM*SPAT#LRR.Q	2

gi|45439359|ref|NP_00

3097

346901

6.4

triple functional domain protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13633.13633.2	2.8186	0.3037	1029.538	1029.2172	3	771.8	72.2%	2	R.GGPILTFPAR.S	2 2
*	step02.19704.19704.2	2.3863	0.3119	1740.164	1740.8325	33	302.3	33.3%	1	K.EVKDSSGRSKY#LYK.S	2

Similarities: gi|148839466|ref|NP_0(1:1)

gi|148839466|ref|NP_0

2986

340261

6.1

kalirin isoform 1 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
	step04.13633.13633.2	2.8186	0.3037	1029.538	1029.2172	3	771.8	72.2%	2	R.GGPILTFPAR.S	2 2
	step02.12515.12515.2	2.4193	0.169	1790.62	1789.7007	6	291.8	36.5%	1	R.YS#EKAGLECS#DIEK.A	2

Similarities: gi|45439359|ref|NP_00(1:1)

gi|157671929|ref|NP_0

1686

190678

8.0

phosphatidylinositol-4-phosphate 3-kinase C2 domain-containing subunit alpha [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.3232.3232.2	2.4388	0.115	993.312	993.1569	3	448.2	71.4%	1	K.PCKEAMTR.H	2
*	step03.9281.9281.1	2.2017	0.0968	716.657	716.6562	1	702.5	83.3%	1	K.Y#NPDK.H	1

gi|62988361|ref|NP_00

1723

188616

5.9

absent in melanoma 1 protein [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step04.10893.10893.2	3.0124	0.1063	1806.548	1807.0842	116	131.2	33.3%	1	K.QMDS#AVCM*PMKRKK.A	2
*	step04.10885.10887.2	2.7005	0.1034	1807.493	1807.0842	116	142.7	30.8%	1	K.QMDS#AVCMPM*KRKK.A	2

gi|83367077|ref|NP_07

14507

1519216

5.3

mucin-16 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step03.18872.18872.2	2.261	0.0951	2255.025	2255.278	11	211.7	25.0%	1	R.TTENHPKTESAT#PAAYSGSPK.I	2
*	step03.232.232.3	3.7099	0.09	3274.28	3275.3823	4	451.4	15.9%	1	R.TISSLTHELTSRVTPIPGDWMS#S#AMST#K.P	3
*	step04.17352.17352.2	2.2005	0.1168	1751.63	1752.716	65	248.6	28.6%	1	R.LT#ATQS#T#APKGIPVK.P	2
*	step01.15909.15909.2	2.641	0.1385	2390.855	2390.2502	1	159.2	21.1%	1	R.GPSPDQSTMS#QDIS#TEVIT#R.L	2
*	step05.12529.12529.2	3.2022	0.3729	1590.455	1589.6	1	472.0	45.5%	1	K.YEEDMHCPGS#RK.F	2

gi|156766050|ref|NP_6

5795

616641

5.4

protein AHNAK2 [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step05.11549.11549.2	2.7752	0.1622	1614.134	1615.0417	11	313.6	50.0%	1	K.VQMPSLKMPKVDLK.G	2
*	step04.12897.12897.2	2.7939	0.0911	1647.813	1649.0582	26	266.4	50.0%	1	K.VQMPSFKMPKVDLK.G	2
*	step05.11842.11842.2	2.8937	0.1034	1615.574	1616.0265	4	515.3	53.8%	1	K.VEMPSLKMPKVDLK.G	2

gi|93102379|ref|NP_06

4599

515501

5.3

low-density lipoprotein receptor-related protein 1B precursor [Homo sapiens]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	step02.12387.12387.2	2.4972	0.1003	1724.781	1724.7864	3	353.0	34.6%	1	K.EELT#KATALT#IMDK.K	2
*	step04.18247.18247.2	2.3596	0.0854	2176.115	2175.1323	21	206.3	22.4%	1	R.VGMDGT#NQSVVIET#KIS#R.P	2

gi|60097902|ref|NP_00